genome.fa.s16.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  11  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3213623--3213651	11	2.5	12	94	5	51	0	20	0	79	0.74
3216804--3216865	11	5.6	11	74	18	58	59	0	3	37	1.13
3216791--3216870	32	2.5	32	91	6	126	61	0	3	35	1.14
3218874--3218912	16	2.4	17	83	12	55	66	2	2	28	1.18
3221118--3221144	2	13.5	2	100	0	54	48	0	0	51	1.00
3221263--3221296	14	2.5	14	85	4	52	85	0	14	0	0.60
3223502--3223535	17	2.0	17	88	0	50	32	0	2	64	1.08
3224480--3224550	21	3.3	21	74	2	70	57	12	11	18	1.64
3224480--3224550	32	2.2	33	80	7	83	57	12	11	18	1.64
3232311--3232373	33	1.9	35	84	12	89	42	0	4	52	1.22
3232678--3232719	11	3.9	11	78	6	50	76	7	11	4	1.15
3232911--3232968	29	2.0	29	83	12	75	31	0	25	43	1.55
3243086--3243121	16	2.2	16	95	0	63	27	0	33	38	1.57
3243135--3243236	39	2.4	44	82	15	160	27	2	30	39	1.71
3243874--3243922	22	2.2	22	82	7	55	10	20	4	65	1.39
3246639--3246712	32	2.3	32	92	0	130	21	12	13	52	1.72
3260628--3260661	16	2.1	16	89	10	52	44	0	0	55	0.99
3263730--3264137	46	9.6	45	83	11	444	34	14	21	29	1.93
3263766--3263956	36	5.0	36	84	12	247	37	13	20	28	1.91
3263730--3264137	82	4.9	82	83	12	419	34	14	21	29	1.93
3263876--3263941	21	3.5	20	63	25	52	34	12	19	33	1.89
3264941--3264992	21	2.5	20	81	9	59	53	1	11	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3267808--3267899	48	1.9	48	82	8	116	63	2	0	34	1.07
3267806--3267908	48	2.1	48	77	7	111	65	1	0	33	1.04
3267856--3267942	21	4.3	20	75	15	63	63	0	0	36	0.95
3267913--3267962	9	5.3	9	76	9	55	54	2	0	44	1.11
3267910--3267962	20	2.8	19	85	5	63	52	1	0	45	1.11
3271898--3272280	54	7.1	54	86	1	439	41	20	24	13	1.88
3272057--3272256	27	7.4	27	64	16	101	42	21	24	12	1.86
3271875--3272280	162	2.5	161	85	4	512	41	21	23	12	1.88
3272292--3272390	51	1.9	51	89	4	155	45	20	21	13	1.84
3272343--3272469	63	2.0	63	92	0	209	43	27	15	13	1.84
3274143--3274202	31	1.9	31	89	0	93	25	20	16	38	1.93
3281283--3281359	13	5.6	13	72	15	57	19	5	2	72	1.15
3288197--3288230	5	6.6	5	96	3	59	0	58	41	0	0.98
3289641--3289791	76	2.0	76	97	0	284	31	4	9	54	1.54
3289863--3289896	16	2.1	16	94	0	59	50	5	2	41	1.42
3290515--3290547	13	2.5	13	90	9	50	36	3	12	48	1.56
3291431--3291461	12	2.6	12	100	0	62	29	0	6	64	1.18
3292641--3292708	16	4.2	16	90	7	102	27	0	33	38	1.57
3292641--3292708	32	2.1	32	94	0	118	27	0	33	38	1.57
3292838--3293147	157	2.0	157	94	0	539	44	3	4	47	1.41
3292901--3293150	76	3.1	81	63	24	186	46	4	3	45	1.39
3298811--3299003	41	4.7	41	87	0	287	19	21	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3299344--3299394	22	2.3	23	77	16	63	27	1	25	45	1.64
3299643--3299684	16	2.5	17	92	7	68	54	0	0	45	0.99
3299877--3299917	21	1.9	22	90	5	66	24	0	36	39	1.56
3300144--3300190	23	2.0	23	92	8	78	65	4	0	29	1.11
3300193--3300277	39	2.2	39	85	4	109	37	18	22	21	1.94
3301065--3301146	38	2.2	38	86	4	112	20	15	8	54	1.67
3303716--3303741	5	5.2	5	100	0	52	80	19	0	0	0.71
3303866--3304050	43	4.3	43	89	0	255	23	20	31	24	1.98
3303805--3304050	86	2.9	85	82	3	246	22	19	28	28	1.98
3307837--3307891	23	2.3	25	81	15	71	47	0	0	52	1.00
3308254--3308320	34	1.9	35	87	3	100	31	8	14	44	1.76
3308940--3308978	21	1.9	20	84	5	51	46	5	0	48	1.24
3316617--3316648	16	2.1	16	94	5	57	6	15	6	71	1.26
3317082--3317171	40	2.2	40	88	0	135	12	17	42	27	1.85
3324247--3324361	44	2.7	43	80	4	142	27	25	20	26	1.99
3333252--3333281	11	2.7	11	94	0	51	16	3	0	80	0.85
3337237--3337344	32	3.2	32	69	19	103	30	4	27	37	1.77
3337227--3337364	68	2.0	68	100	0	276	30	5	28	35	1.81
3340242--3340270	6	5.0	6	91	8	51	86	0	13	0	0.58
3353030--3353073	14	3.0	15	75	18	56	20	6	6	65	1.39
3361977--3362029	27	2.0	26	85	7	72	45	15	18	20	1.85
3380907--3380938	3	10.7	3	100	0	64	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3389053--3389091	18	2.2	18	86	9	53	56	2	2	38	1.27
3391667--3391732	28	2.4	28	85	10	82	40	16	6	36	1.73
3391667--3391733	27	2.4	28	85	11	86	40	16	5	37	1.73
3411112--3411147	17	2.0	19	89	10	58	41	0	0	58	0.98
3414966--3415004	20	2.0	20	84	0	51	48	0	5	46	1.24
3416475--3416542	31	2.2	31	83	0	82	58	0	4	36	1.18
3416487--3416554	31	2.2	30	86	2	91	55	0	5	38	1.24
3421402--3421526	59	2.1	59	76	15	134	27	11	10	51	1.70
3421578--3421630	25	2.1	25	85	0	70	49	16	9	24	1.76
3422765--3422844	39	2.1	39	97	0	151	52	11	5	31	1.58
3425156--3425201	19	2.4	19	85	10	58	78	4	2	15	1.01
3426777--3426814	14	2.8	13	88	7	58	13	23	23	39	1.90
3433017--3433050	12	2.8	12	86	13	52	82	2	14	0	0.79
3433933--3434155	44	4.9	44	71	15	141	30	17	22	29	1.97
3433878--3434097	94	2.3	94	85	3	282	29	19	21	29	1.98
3434220--3434333	44	2.6	44	81	0	138	28	17	25	28	1.98
3434220--3434377	44	3.6	44	73	11	121	29	17	24	29	1.97
3434030--3434654	181	3.4	179	73	9	539	31	15	22	31	1.95
3434030--3434701	363	1.8	366	84	1	909	30	15	22	31	1.95
3434779--3434888	41	2.7	41	90	5	161	29	18	21	30	1.97
3434860--3435017	44	3.6	45	76	5	135	30	18	18	31	1.96
3438640--3438818	89	2.0	89	97	0	340	31	9	26	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3440192--3440258	27	2.5	27	82	0	80	32	22	16	28	1.95
3442453--3442506	23	2.4	23	84	9	67	53	5	3	37	1.42
3442483--3442520	16	2.4	16	90	0	58	47	5	5	42	1.48
3442684--3442787	52	2.0	52	98	0	199	25	26	12	34	1.92
3442962--3442995	16	2.1	16	100	0	68	44	11	0	44	1.40
3443181--3443214	9	3.8	9	92	0	50	20	35	11	32	1.89
3445438--3445533	45	2.1	45	92	3	158	36	12	13	37	1.83
3445876--3445919	21	2.1	21	100	0	88	56	0	0	43	0.99
3449047--3449077	13	2.4	13	100	0	62	41	32	6	19	1.77
3450578--3450603	10	2.6	10	100	0	52	26	0	0	73	0.84
3451131--3451173	22	1.9	23	85	4	61	27	2	4	65	1.25
3452314--3452355	9	4.4	9	80	19	50	57	0	2	40	1.12
3459408--3459579	46	3.7	46	81	2	202	34	20	19	25	1.96
3468274--3468366	39	2.5	37	80	7	98	27	29	22	20	1.98
3468722--3468760	3	13.0	3	83	0	51	58	5	0	35	1.20
3469423--3469448	11	2.4	11	100	0	52	0	42	7	50	1.31
3469806--3469848	21	2.0	21	81	0	50	58	6	0	34	1.25
3473777--3473809	13	2.5	13	95	0	57	0	18	0	81	0.68
3473771--3473815	6	7.5	6	82	9	56	0	20	0	80	0.72
3479796--3479882	39	2.2	39	95	0	156	33	22	9	34	1.86
3492804--3492831	11	2.5	11	100	0	56	53	17	0	28	1.44
3494612--3494790	75	2.4	74	87	2	259	24	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3494764--3494816	27	2.0	26	88	3	79	18	22	33	24	1.97
3494688--3494892	102	2.0	101	86	2	286	24	19	27	29	1.98
3494582--3494904	177	1.8	177	90	1	522	23	18	26	31	1.97
3495293--3495521	101	2.3	101	91	3	370	20	20	27	31	1.98
3495393--3495446	27	2.0	26	89	3	81	18	20	31	29	1.96
3495832--3495885	27	2.0	27	96	3	101	31	33	18	16	1.93
3495864--3496035	33	4.6	41	71	18	151	34	27	15	22	1.94
3495757--3495959	101	2.0	101	92	1	336	31	28	19	20	1.97
3495858--3496035	75	2.4	75	91	1	277	33	27	16	21	1.95
3495726--3496060	176	1.9	176	91	1	546	32	27	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170