genome.fa.s16.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  142  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42786555--42786690	51	2.7	51	94	0	227	30	16	27	26	1.97
42788746--42788845	36	2.7	37	80	11	107	47	1	21	31	1.58
42789049--42789121	21	3.5	21	84	1	85	17	24	24	32	1.97
42793178--42793219	21	2.0	21	90	0	66	47	0	7	45	1.30
42793710--42793924	61	3.8	55	80	8	232	50	15	10	23	1.75
42793710--42793924	118	1.8	116	85	2	304	50	15	10	23	1.75
42796737--42796795	26	2.2	26	88	8	84	32	10	5	52	1.57
42798808--42798856	23	2.1	22	82	14	55	26	4	16	53	1.61
42799101--42799125	13	1.9	13	100	0	50	24	0	4	72	1.02
42805662--42805693	3	10.7	3	100	0	64	0	34	0	65	0.93
42811692--42811772	41	2.0	41	95	0	144	48	11	14	25	1.77
42813662--42813687	13	2.0	13	100	0	52	38	0	0	61	0.96
42815724--42815867	66	2.2	65	85	3	182	30	13	27	27	1.94
42822427--42822462	4	9.0	4	100	0	72	25	0	25	50	1.50
42830523--42830547	6	4.2	6	100	0	50	52	0	0	48	1.00
42831893--42831931	17	2.4	17	86	4	53	41	2	5	51	1.38
42833437--42833466	11	2.6	11	94	5	51	26	26	26	20	1.99
42841382--42841412	5	6.0	5	96	3	53	3	58	38	0	1.15
42841477--42841577	11	9.5	11	83	11	88	55	0	4	39	1.22
42841455--42841532	18	4.3	16	80	15	57	65	0	1	33	1.01
42841437--42841503	27	2.4	27	85	7	80	62	1	1	34	1.13
42841473--42841533	10	6.3	10	78	12	65	65	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42841437--42841532	29	3.4	27	78	16	88	63	1	1	34	1.08
42841477--42841577	22	4.8	21	84	12	109	55	0	4	39	1.22
42841540--42841588	22	2.2	22	82	7	55	57	0	6	36	1.24
42841896--42841935	3	13.3	3	100	0	80	32	0	0	67	0.91
42842061--42842098	7	5.1	7	93	6	58	28	0	0	71	0.87
42847887--42848028	50	2.8	50	93	0	230	20	31	22	25	1.98
42848128--42848154	13	2.1	13	100	0	54	62	7	0	29	1.22
42852454--42852592	50	2.8	50	82	1	161	21	28	23	27	1.99
42859539--42859763	51	4.7	50	81	10	258	33	16	19	30	1.94
42859728--42859821	41	2.3	41	88	0	143	32	20	12	34	1.90
42859905--42860033	44	2.9	44	83	2	161	34	19	18	27	1.95
42861623--42861654	3	10.7	3	100	0	64	0	0	31	68	0.90
42861787--42861825	14	2.7	14	84	4	51	38	7	0	53	1.30
42861835--42861860	13	2.0	13	100	0	52	30	0	7	61	1.24
42862451--42862488	18	2.1	18	90	5	58	10	13	0	76	1.02
42863207--42863247	12	3.4	12	82	0	55	34	4	4	56	1.42
42863780--42864320	109	5.0	109	90	1	845	30	15	19	34	1.92
42868100--42868146	16	2.9	16	87	3	67	82	0	17	0	0.66
42868119--42868145	14	1.9	14	100	0	54	81	0	18	0	0.69
42868104--42868151	23	2.0	24	88	4	71	77	0	22	0	0.78
42869371--42870120	88	8.5	88	95	0	1320	26	25	24	24	2.00
42870150--42870409	52	5.4	51	65	20	171	30	17	23	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42870122--42870455	95	3.5	95	93	0	578	28	17	23	29	1.97
42870153--42870540	190	2.0	187	83	5	485	30	17	22	29	1.97
42870453--42870715	132	2.0	132	89	0	400	33	19	22	25	1.97
42871403--42871441	19	2.0	20	90	5	62	10	12	0	76	1.01
42872087--42872127	12	3.4	12	89	0	64	34	2	4	58	1.32
42872666--42873207	110	5.0	109	89	1	784	31	15	18	34	1.91
42872666--42873194	219	2.4	220	90	2	852	31	14	18	35	1.91
42881406--42881500	47	2.0	48	93	2	165	44	9	3	43	1.52
42881509--42881552	23	2.0	23	86	8	65	50	2	4	43	1.35
42882009--42882077	31	2.3	30	82	5	93	43	11	10	34	1.75
42882009--42882093	31	2.8	29	77	8	80	42	11	9	36	1.74
42884671--42884731	30	2.0	30	100	0	122	34	3	19	42	1.68
42887605--42887646	18	2.5	18	81	11	54	33	0	4	61	1.17
42888001--42888067	33	2.0	33	88	0	98	29	17	20	31	1.96
42888819--42888925	6	17.8	6	67	0	52	5	8	52	33	1.55
42888814--42888955	30	4.7	30	98	0	266	7	9	50	33	1.61
42892117--42892248	28	4.4	30	75	14	119	47	14	16	21	1.82
42892117--42892248	59	2.2	61	84	4	178	47	14	16	21	1.82
42896838--42896931	25	3.8	25	81	8	93	34	20	24	21	1.97
42896888--42896995	25	4.3	25	84	4	128	36	20	25	18	1.95
42904576--42904649	39	2.0	38	84	12	100	27	6	8	58	1.52
42905618--42905665	19	2.5	19	76	6	53	62	2	14	20	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42918431--42918473	16	2.7	16	81	0	50	30	20	27	20	1.98
42922616--42922782	45	4.0	44	76	19	185	38	21	20	19	1.94
42922659--42922735	33	2.3	33	97	0	145	33	22	24	19	1.97
42922614--42922780	78	2.1	78	90	2	264	38	21	20	19	1.94
42922653--42922813	33	4.2	39	79	16	138	37	21	21	19	1.95
42943496--42943887	125	3.1	124	89	1	552	29	17	15	36	1.92
42943980--42944059	34	2.6	29	75	24	83	48	17	0	33	1.47
42944132--42944161	15	2.0	15	100	0	60	46	46	0	6	1.29
42952403--42952624	27	8.4	27	80	7	233	42	19	17	20	1.89
42952435--42952576	76	1.9	76	86	5	207	42	20	16	19	1.89
42952416--42952603	103	1.8	103	86	2	270	43	19	16	21	1.88
42955577--42955666	23	4.0	23	80	7	105	36	22	22	18	1.95
42957914--42958156	50	4.8	50	86	2	326	21	30	22	25	1.98
42959419--42959454	18	1.9	19	94	5	65	50	5	0	44	1.25
42959423--42959465	18	2.3	18	84	11	52	51	6	0	41	1.29
42959715--42959754	17	2.5	15	88	8	53	55	0	0	45	0.99
42961402--42961587	51	3.7	50	79	6	169	25	17	25	32	1.97
42966641--42966690	26	1.9	26	91	0	82	44	10	14	32	1.78
42968791--42968837	23	2.1	22	81	11	60	40	19	21	19	1.92
42972310--42972438	66	2.0	66	96	0	240	31	15	10	42	1.80
42972330--42972434	32	3.2	32	63	15	79	29	16	10	43	1.81
42977166--42977199	17	2.0	17	94	0	59	26	0	5	67	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42977924--42978004	32	2.6	30	80	14	85	64	0	0	35	0.94
42982479--42982531	18	2.9	18	83	5	63	5	33	50	9	1.58
42982598--42982640	9	4.7	9	88	5	68	76	0	0	23	0.78
42982598--42982640	19	2.3	18	88	4	68	76	0	0	23	0.78
42987878--42987917	16	2.4	17	87	4	55	17	2	2	77	0.99
42992930--42993053	25	5.2	23	80	10	101	39	20	22	17	1.92
42992971--42993053	25	3.3	26	89	3	118	38	21	22	16	1.93
42993400--42993429	14	2.1	14	93	0	51	66	0	0	33	0.92
42994085--42994122	11	3.5	11	96	0	67	0	36	7	55	1.29
42994162--42994233	5	14.6	5	74	18	62	56	2	1	38	1.22
42996516--42996549	18	1.9	17	88	5	50	29	0	14	55	1.40
43002644--43002687	19	2.5	17	85	10	54	61	0	2	36	1.09
43016621--43016680	20	3.0	21	73	11	63	61	1	3	33	1.22
43033886--43033920	11	3.1	11	91	4	52	20	31	0	48	1.50
43033886--43033939	23	2.4	23	79	17	60	24	29	0	46	1.53
43033886--43033939	11	4.8	11	77	22	51	24	29	0	46	1.53
43033909--43033986	40	2.0	40	87	5	113	26	23	0	50	1.50
43037130--43037166	18	2.1	18	89	0	56	21	27	8	43	1.80
43037743--43037837	22	4.4	21	75	5	84	46	29	2	22	1.63
43037835--43037920	22	3.9	21	83	7	100	51	30	0	18	1.47
43037857--43037928	22	2.7	29	68	28	77	52	29	0	18	1.45
43037836--43038149	44	7.1	44	75	17	215	49	29	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43037904--43038010	22	4.8	23	81	7	114	51	28	0	19	1.47
43037881--43037939	29	2.0	29	90	0	91	49	32	0	18	1.48
43037970--43038074	7	14.4	7	72	15	52	49	29	0	20	1.55
43037933--43038082	81	1.9	81	87	2	221	49	29	0	20	1.54
43038007--43038149	22	6.4	22	75	9	128	48	30	0	20	1.55
43037970--43038039	37	1.9	36	94	2	122	51	30	1	17	1.54
43038044--43038143	23	4.4	24	72	13	79	50	31	0	19	1.48
43038169--43038207	15	2.7	15	84	4	53	46	28	0	25	1.53
43038025--43038186	22	7.3	22	70	15	93	48	28	0	23	1.51
43038169--43038225	29	2.0	29	82	6	71	42	29	0	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170