genome.fa.s16.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  153  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45616383--45616427	4	11.2	4	95	0	81	26	0	22	51	1.49
45620499--45620529	8	3.9	8	100	0	62	48	0	0	51	1.00
45620589--45620651	10	5.8	10	74	17	54	71	4	19	4	1.22
45620631--45620676	12	3.5	13	80	14	51	71	0	28	0	0.86
45620627--45620676	15	3.5	15	81	13	52	72	0	28	0	0.86
45621539--45621634	40	2.5	39	76	5	97	27	17	23	31	1.97
45623526--45623622	28	3.5	28	85	4	115	31	11	27	28	1.91
45637534--45637568	18	1.9	18	88	0	52	42	0	5	51	1.25
45638676--45638715	16	2.5	16	84	11	55	20	30	2	47	1.63
45639612--45639845	50	4.7	50	82	1	247	30	21	27	20	1.98
45645757--45645844	44	2.0	46	91	8	146	29	3	28	38	1.73
45646091--45646278	43	4.6	43	70	15	130	55	2	0	41	1.15
45646095--45646262	26	6.8	25	67	24	83	55	2	0	41	1.17
45646123--45646156	17	2.0	17	100	0	68	58	0	0	41	0.98
45646213--45646253	13	3.2	12	80	12	55	58	0	0	41	0.98
45646336--45646377	16	2.8	15	75	10	50	59	0	0	40	0.97
45646319--45646377	15	3.9	16	73	22	56	59	1	0	38	1.08
45646452--45646496	16	2.8	16	80	16	56	60	0	2	37	1.09
45645983--45646822	120	7.1	121	88	6	1235	53	4	1	40	1.27
45646467--45646504	18	2.2	17	90	4	58	63	0	2	34	1.09
45646226--45646754	122	4.6	108	74	20	418	53	4	1	40	1.28
45646574--45646617	16	2.7	16	80	16	54	61	0	2	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45646818--45646856	20	2.0	20	84	0	51	43	2	12	41	1.56
45650102--45650144	17	2.6	16	79	20	52	65	0	27	6	1.18
45654717--45654776	29	2.1	29	100	0	120	41	26	6	25	1.80
45658554--45658624	27	2.5	26	80	13	70	59	2	4	33	1.31
45668133--45668168	5	7.2	5	93	0	63	77	2	0	19	0.88
45668541--45668620	24	3.4	24	78	10	85	61	0	3	35	1.14
45668547--45668620	22	3.3	22	78	10	78	60	0	4	35	1.15
45668528--45668629	26	3.8	26	75	12	82	57	1	5	34	1.34
45670063--45670169	42	2.6	41	73	10	101	31	23	18	26	1.97
45670230--45670793	50	11.4	50	66	6	254	25	24	21	29	1.99
45670180--45670776	100	6.0	100	84	4	746	25	23	21	29	1.99
45670811--45670988	88	2.0	88	87	0	257	25	25	20	28	1.99
45672245--45672306	15	4.2	15	89	10	92	12	16	0	70	1.16
45672245--45672316	8	9.7	7	84	13	83	13	16	0	69	1.19
45679784--45679819	5	7.2	5	87	0	54	75	2	2	19	1.06
45680162--45680203	22	1.9	22	90	0	66	42	0	16	40	1.48
45680198--45680309	26	4.4	26	78	10	108	56	0	5	37	1.28
45685268--45685415	79	1.9	79	80	2	172	47	11	8	33	1.69
45686262--45686304	22	2.0	21	82	13	52	32	23	2	41	1.67
45687979--45688010	16	2.0	16	93	0	55	46	0	0	53	1.00
45704898--45704950	21	2.5	21	100	0	106	30	13	15	41	1.85
45707800--45707858	31	1.9	31	89	0	91	45	11	6	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45710759--45710783	10	2.5	10	100	0	50	88	0	12	0	0.53
45715286--45715408	21	5.9	21	73	0	102	43	17	21	16	1.87
45715290--45715444	42	3.7	42	84	0	166	45	16	21	16	1.85
45722130--45722211	26	3.2	26	68	16	80	40	3	9	46	1.54
45723679--45723712	17	2.1	16	88	5	50	82	0	11	5	0.83
45726567--45726610	21	2.2	20	83	4	52	6	9	2	81	0.94
45726660--45726694	17	1.9	19	88	11	56	20	2	11	65	1.37
45735235--45735456	30	7.4	30	81	4	182	38	13	23	24	1.90
45735210--45735456	30	8.3	31	79	5	181	38	13	24	24	1.91
45735210--45735522	120	2.6	119	81	3	315	38	13	23	24	1.91
45735441--45735516	30	2.5	30	77	8	82	43	11	18	26	1.84
45740668--45740740	21	3.5	20	78	17	69	23	2	4	69	1.18
45740667--45740716	20	2.5	19	82	17	66	26	2	2	70	1.09
45742684--45742748	33	2.0	33	93	0	112	16	9	15	58	1.62
45746076--45746135	21	2.8	21	80	7	59	66	3	1	28	1.17
45746067--45746223	56	3.0	50	77	13	129	59	3	3	33	1.31
45758955--45759003	24	2.0	24	88	0	71	24	30	20	24	1.98
45759653--45759677	12	2.1	12	100	0	50	52	8	0	40	1.31
45763339--45763566	10	24.0	9	65	18	54	57	4	3	34	1.35
45763465--45763522	29	1.9	30	86	13	84	58	8	0	32	1.28
45763670--45763705	14	2.5	15	90	4	56	27	0	2	69	1.02
45764106--45764300	10	19.8	10	67	13	66	31	2	4	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45764103--45764162	30	2.0	30	87	3	86	28	0	6	65	1.18
45764254--45764300	21	2.3	21	88	3	69	29	2	2	65	1.15
45764235--45764306	29	2.5	29	78	13	76	29	4	1	65	1.20
45764904--45764938	16	2.2	16	89	0	52	62	2	5	28	1.32
45767389--45767432	21	2.2	21	84	8	56	45	18	25	11	1.82
45767405--45767540	42	3.2	42	80	8	134	44	17	22	15	1.86
45767401--45767483	21	4.0	21	72	9	71	43	20	22	13	1.86
45767424--45767495	21	3.4	21	73	7	74	45	18	22	13	1.84
45767400--45767521	21	5.8	21	70	8	70	42	19	24	13	1.87
45776571--45776626	24	2.3	23	82	11	60	25	1	3	69	1.14
45778210--45778247	19	2.0	20	84	5	51	47	0	2	50	1.15
45778205--45778253	25	2.0	25	84	15	66	51	0	2	46	1.12
45778784--45778837	19	2.9	18	77	20	58	31	0	1	66	1.02
45778786--45778840	18	3.0	18	81	2	65	32	0	1	65	1.03
45784006--45784057	24	2.2	24	89	0	77	53	7	3	34	1.48
45785170--45785204	15	2.3	15	90	0	61	65	17	0	17	1.27
45786264--45786296	9	3.9	9	88	11	52	33	0	0	66	0.92
45786265--45786311	14	3.1	15	80	17	53	27	2	0	70	0.99
45786401--45786458	4	15.0	4	85	7	75	24	5	0	70	1.07
45788822--45788861	20	2.0	20	90	0	62	27	10	12	50	1.72
45788807--45788873	34	1.9	35	90	3	109	31	8	13	46	1.74
45788801--45788877	14	5.0	15	71	20	52	33	9	14	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45789775--45789831	29	1.9	30	86	10	82	50	1	5	42	1.35
45801833--45801870	16	2.4	16	86	0	58	55	5	0	39	1.23
45805714--45805751	3	12.7	3	94	0	67	31	0	2	65	1.06
45808133--45808167	3	11.7	3	93	0	61	2	31	0	65	1.07
45808269--45808296	2	14.0	2	100	0	56	50	0	50	0	1.00
45811499--45811563	20	3.3	20	70	12	71	43	7	7	41	1.62
45811497--45811585	39	2.3	39	96	1	162	41	6	10	41	1.65
45811519--45811577	19	3.1	19	67	13	57	38	6	11	42	1.68
45817934--45818261	161	2.0	161	99	0	647	26	14	27	31	1.95
45821704--45821753	6	8.2	6	86	4	73	46	16	20	18	1.85
45822028--45822114	40	2.2	40	87	4	122	40	21	8	29	1.82
45823640--45823664	11	2.3	11	100	0	50	32	24	20	24	1.98
45824758--45824863	13	7.7	13	67	13	52	4	21	3	69	1.23
45825029--45825064	18	1.9	19	94	5	65	50	5	0	44	1.25
45828390--45828467	10	7.4	10	70	18	52	1	25	3	69	1.13
45828393--45828467	14	5.2	14	69	12	62	1	25	4	69	1.14
45828385--45828437	27	2.0	27	81	7	63	0	26	1	71	0.96
45828658--45828693	18	1.9	19	94	5	65	47	5	2	44	1.41
45829556--45829590	17	2.1	17	88	0	52	5	14	5	74	1.19
45832768--45832827	30	2.0	30	100	0	120	30	20	6	43	1.77
45835326--45835376	18	2.8	18	90	0	84	23	7	17	50	1.72
45839634--45839688	18	3.1	18	91	0	92	23	7	20	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45840006--45840054	17	3.0	17	80	16	59	32	0	0	67	0.91
45840014--45840056	16	2.4	19	77	18	56	34	0	0	65	0.93
45845280--45845463	92	2.0	92	100	0	368	31	16	14	38	1.88
45851699--45851789	25	3.6	25	78	8	89	21	24	18	35	1.96
45851696--45851807	25	4.5	25	78	6	88	21	24	19	34	1.96
45852446--45852478	15	2.3	15	89	5	50	39	0	24	36	1.56
45859115--45859139	13	1.9	13	100	0	50	16	12	24	48	1.79
45863952--45864003	23	2.2	23	86	6	68	46	5	1	46	1.38
45883690--45883725	18	2.0	19	89	10	58	50	16	2	30	1.60
45883765--45884049	147	1.9	147	80	7	326	41	8	11	38	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170