genome.fa.s16.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  85  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26270572--26270605	11	3.2	11	83	8	52	29	11	32	26	1.92
26274766--26274822	18	3.3	16	76	13	51	66	3	15	14	1.38
26277551--26277580	15	1.9	16	93	6	53	13	20	0	66	1.24
26295150--26295183	11	3.2	11	83	8	52	29	11	32	26	1.92
26300906--26300955	13	3.9	12	79	10	55	18	8	8	66	1.42
26301734--26301767	11	3.2	11	83	8	52	29	11	32	26	1.92
26304871--26304916	23	2.0	23	87	8	67	36	21	8	32	1.84
26308024--26308370	50	7.0	50	87	1	457	27	21	30	21	1.98
26308024--26308370	99	3.5	99	86	2	455	27	21	30	21	1.98
26308038--26308371	149	2.2	148	85	2	445	26	21	30	21	1.98
26309861--26309906	23	2.0	23	91	0	74	41	23	6	28	1.79
26317399--26317572	27	6.6	27	84	2	201	26	14	29	29	1.96
26317399--26317572	53	3.3	53	86	4	235	26	14	29	29	1.96
26323563--26323789	40	5.7	40	95	0	409	22	28	20	29	1.98
26332332--26332558	40	5.7	40	95	0	409	22	28	20	29	1.98
26336026--26336060	12	2.9	12	91	0	61	68	8	22	0	1.16
26336026--26336060	6	5.8	6	93	0	52	68	8	22	0	1.16
26346290--26346435	41	3.6	41	90	1	204	30	20	29	19	1.97
26372274--26372451	27	6.6	27	83	3	205	26	15	28	29	1.96
26372275--26372430	82	1.9	81	88	3	233	26	15	28	29	1.96
26372271--26372451	82	2.2	81	83	2	229	27	15	27	29	1.96
26380182--26380369	50	3.6	50	78	9	155	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26389044--26389172	50	2.6	50	83	4	161	27	20	27	23	1.99
26391397--26391594	50	3.9	50	78	11	170	27	19	28	25	1.98
26391463--26391645	50	3.7	50	81	5	194	27	20	27	24	1.99
26404617--26404650	16	2.1	17	88	5	52	38	0	20	41	1.53
26410113--26410148	18	1.9	19	88	5	56	30	5	19	44	1.73
26410692--26410751	27	2.2	28	82	5	70	36	20	23	20	1.95
26410921--26411052	26	5.1	26	83	3	158	27	17	19	35	1.94
26426664--26426729	20	3.2	20	61	4	51	36	10	33	19	1.86
26426644--26426787	41	3.5	41	86	0	200	31	14	30	22	1.94
26429692--26429737	15	3.0	16	73	20	53	56	10	6	26	1.58
26430704--26430748	23	2.0	23	100	0	90	53	8	4	33	1.52
26437434--26437605	85	2.0	86	88	1	256	38	9	26	26	1.86
26440278--26440609	47	7.1	47	93	0	531	31	9	31	28	1.88
26440728--26440806	37	2.1	37	88	0	113	24	17	31	26	1.97
26442660--26442848	43	4.4	43	98	0	360	23	14	35	25	1.93
26442834--26442903	29	2.4	29	85	4	88	28	14	31	25	1.95
26443295--26443530	40	5.9	40	91	1	366	25	23	26	24	2.00
26445115--26445299	79	2.3	82	83	7	229	24	27	22	24	2.00
26445096--26445299	40	5.1	40	81	8	229	24	27	22	25	2.00
26453014--26453198	79	2.3	82	84	7	238	25	27	22	24	2.00
26452995--26453198	40	5.1	40	82	8	238	25	27	22	25	2.00
26457728--26458058	47	7.1	47	94	1	540	30	9	31	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26457728--26458058	93	3.5	94	94	1	540	30	9	31	28	1.88
26458176--26458253	36	2.1	37	90	2	122	24	19	30	25	1.98
26461467--26461965	47	10.6	47	95	0	881	32	8	29	29	1.87
26462084--26462258	37	4.7	37	96	0	305	25	18	30	25	1.98
26464698--26464736	20	2.0	20	85	5	53	20	12	12	53	1.71
26466895--26466944	25	2.0	25	84	7	66	56	0	2	42	1.11
26474204--26474234	8	3.9	8	95	0	53	22	0	25	51	1.48
26475035--26475392	41	8.6	40	79	7	374	22	16	25	34	1.95
26475034--26475396	84	4.4	84	90	1	552	22	17	25	34	1.96
26481417--26481478	30	2.1	30	84	6	81	46	11	8	33	1.69
26491192--26491627	223	2.0	223	87	1	633	33	16	21	27	1.95
26492088--26492213	26	4.8	26	84	1	146	34	24	19	21	1.97
26495296--26495820	262	2.0	262	100	0	1050	41	6	19	32	1.78
26498962--26499102	50	2.8	50	80	7	169	29	24	19	26	1.98
26514496--26514686	40	4.8	40	91	2	235	27	27	20	23	1.99
26516918--26516978	23	2.7	23	89	0	86	14	11	31	42	1.81
26517640--26517709	4	17.5	4	73	16	56	22	0	27	50	1.50
26517676--26517715	20	2.0	21	95	5	73	30	0	22	47	1.52
26519046--26519112	30	2.2	30	86	0	89	35	10	20	32	1.87
26520065--26520109	21	2.1	21	84	8	56	66	6	4	22	1.33
26520178--26520210	3	11.3	3	93	6	59	69	0	0	30	0.88
26520319--26520352	4	8.5	4	86	0	50	73	2	2	20	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26520302--26520424	65	1.9	65	94	0	219	67	3	13	15	1.35
26520319--26520400	12	6.4	12	70	20	51	69	2	10	17	1.28
26520316--26520408	16	5.8	15	69	25	57	68	2	10	18	1.28
26521637--26521694	23	2.5	23	97	0	107	3	3	37	55	1.34
26522057--26522337	44	6.2	45	77	8	221	30	20	16	32	1.94
26522113--26522337	44	5.1	45	82	1	222	32	19	15	32	1.93
26526168--26526199	12	2.6	13	85	14	50	56	6	0	37	1.25
26530085--26530139	20	2.8	20	76	12	62	70	5	3	20	1.22
26541679--26541720	18	2.3	18	91	0	66	42	7	28	21	1.79
26550045--26550084	6	6.7	6	100	0	80	17	32	17	32	1.93
26550235--26550477	135	1.8	134	94	0	432	27	18	14	38	1.90
26550966--26551022	29	1.9	30	82	10	73	42	0	3	54	1.17
26564762--26564807	21	2.2	21	84	7	58	28	26	4	41	1.74
26570902--26570944	21	2.0	21	95	0	77	18	25	13	41	1.88
26573686--26573730	21	2.1	22	84	12	58	22	15	13	48	1.79
26585062--26585109	22	2.2	22	100	0	96	37	10	25	27	1.88
26586582--26586761	48	3.7	48	90	1	288	31	28	6	33	1.83
26586582--26586761	96	1.9	98	96	2	337	31	28	6	33	1.83
26590277--26590365	44	2.0	44	88	0	133	23	23	2	50	1.60
26596727--26596869	43	3.3	43	90	0	214	26	18	26	27	1.98
26599429--26599531	51	2.1	50	81	3	118	30	9	12	47	1.73
26604163--26604331	58	3.1	58	83	13	255	40	4	0	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26604213--26604333	25	4.9	23	68	24	77	41	4	0	54	1.19
26604163--26604333	50	3.3	50	90	6	243	40	4	0	54	1.19
26604656--26604746	35	2.6	36	78	11	100	35	46	1	17	1.56
26604662--26604756	27	3.5	27	78	15	88	36	44	1	17	1.56
26604806--26604853	7	7.0	7	79	13	55	41	41	0	16	1.48
26604986--26605018	14	2.3	15	94	5	59	36	33	0	30	1.58
26605067--26605103	14	2.6	14	91	0	65	45	29	0	24	1.53
26605415--26605759	41	8.4	41	84	2	399	30	24	21	24	1.99
26613023--26613075	19	2.8	19	80	11	65	77	1	15	5	1.04
26613020--26613074	24	2.3	24	87	0	83	76	1	16	5	1.06
26613023--26613077	6	9.0	6	76	11	58	76	1	16	5	1.06
26615253--26615292	20	2.0	20	95	0	71	25	22	20	32	1.98
26616136--26616189	27	2.0	27	92	0	90	22	18	12	46	1.83
26618720--26618754	18	1.9	18	88	0	52	28	17	11	42	1.83
26619821--26619855	18	2.0	17	88	5	52	71	2	2	22	1.13
26620153--26620310	41	3.9	41	93	1	273	25	22	21	30	1.99
26620377--26620434	26	2.2	26	82	11	66	56	3	10	29	1.49
26620686--26620716	14	2.1	15	94	5	55	32	0	35	32	1.58
26620738--26620802	7	9.3	7	76	6	60	26	0	38	35	1.57
26620822--26620930	50	2.2	51	81	3	132	32	0	14	52	1.48
26621824--26621997	69	2.4	70	83	11	210	44	14	12	27	1.82
26621892--26622228	117	2.9	115	90	2	525	42	14	12	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26622178--26622293	55	2.1	55	98	0	223	45	14	8	31	1.75
26622122--26622400	129	2.2	125	82	9	337	48	13	8	29	1.72
26622406--26622455	21	2.4	21	83	6	66	22	50	0	28	1.49
26623624--26623683	24	2.5	24	86	2	86	23	11	8	56	1.61
26626719--26626897	43	4.2	40	81	11	169	25	17	28	29	1.97
26626939--26626980	22	1.9	22	95	0	75	40	28	21	9	1.84
26628741--26628780	21	1.9	21	90	10	64	17	2	22	57	1.52
26630294--26630330	15	2.5	15	100	0	74	13	32	27	27	1.94
26635830--26635867	19	2.0	19	100	0	76	42	5	5	47	1.48
26637452--26637487	18	1.9	20	88	11	58	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170