genome.fa.s16.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  104  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32369621--32369668	18	2.5	19	76	6	53	20	10	12	56	1.65
32377185--32377254	6	11.7	6	95	0	95	0	58	22	18	1.39
32381896--32382107	47	4.5	47	90	2	309	29	30	8	31	1.87
32387938--32388000	33	1.9	33	84	12	85	46	0	3	50	1.17
32394390--32394464	19	3.8	19	84	6	96	36	17	9	37	1.82
32394860--32395001	43	3.3	43	64	9	99	18	24	27	29	1.98
32394826--32396302	88	16.9	88	86	2	1652	22	24	25	27	2.00
32395729--32395874	45	3.3	45	65	11	120	26	24	18	30	1.98
32394886--32396302	527	2.7	527	89	0	2135	22	24	24	27	2.00
32403178--32403227	21	2.5	19	87	12	82	36	16	10	38	1.82
32403183--32403226	21	2.1	21	100	0	88	38	13	9	38	1.77
32403589--32404418	88	9.4	88	85	1	930	22	24	25	27	2.00
32403640--32403783	44	3.3	44	63	3	119	22	25	27	25	2.00
32405996--32406052	21	2.8	21	92	5	91	36	17	10	35	1.84
32410091--32410139	22	2.2	22	88	0	71	16	32	12	38	1.86
32412193--32412426	9	24.6	9	67	26	69	60	1	2	35	1.19
32412192--32412428	28	8.3	28	67	23	106	60	1	2	35	1.19
32412271--32412323	10	5.3	10	80	15	56	64	3	0	32	1.12
32412320--32412381	26	2.4	27	76	15	69	61	0	3	35	1.12
32412369--32412426	10	5.8	10	75	15	50	63	0	1	34	1.04
32412718--32412765	21	2.4	19	78	18	53	31	0	6	62	1.20
32412731--32412773	21	2.0	22	90	4	70	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32415285--32415334	20	2.5	20	83	6	66	30	10	14	46	1.77
32424480--32424532	20	2.6	20	85	8	63	54	7	3	33	1.46
32436712--32436748	11	3.3	11	92	3	56	48	24	8	18	1.75
32439012--32439042	15	2.1	15	93	0	53	38	12	35	12	1.82
32445270--32445305	18	1.9	18	88	5	54	58	2	0	38	1.13
32447642--32447698	24	2.4	24	82	5	71	29	19	31	19	1.96
32456421--32456489	31	2.4	28	78	17	79	60	4	2	31	1.31
32458187--32458289	25	4.2	25	72	13	88	30	21	28	20	1.98
32461278--32461314	18	2.2	18	90	9	60	32	0	43	24	1.55
32475210--32475239	12	2.5	12	94	0	51	16	23	13	46	1.82
32483741--32483781	4	10.2	4	84	10	57	75	0	2	21	0.92
32489998--32490206	93	2.3	89	82	9	253	36	17	10	35	1.85
32490378--32490437	20	3.0	20	71	11	61	58	5	6	30	1.45
32490567--32490641	37	2.0	37	84	5	98	37	4	1	57	1.26
32490731--32490903	86	2.0	87	81	6	201	32	10	20	35	1.88
32496198--32496238	21	2.0	21	90	0	64	29	21	29	19	1.98
32499640--32499692	26	2.0	26	100	0	106	22	22	28	26	1.99
32501201--32501255	27	1.9	29	89	10	87	9	1	43	45	1.46
32501261--32501613	96	3.6	102	74	14	319	39	2	18	38	1.66
32501290--32501586	96	3.1	97	84	3	388	38	3	18	40	1.66
32501625--32501916	126	2.3	126	91	2	462	34	17	19	28	1.95
32505356--32505642	50	5.8	50	85	1	344	22	28	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32505984--32506041	30	1.9	30	85	0	80	31	25	3	39	1.73
32512506--32512548	20	2.2	19	84	12	52	46	6	0	46	1.30
32513514--32513577	23	2.9	21	82	11	83	46	0	31	21	1.52
32515116--32515226	37	3.0	37	75	0	123	45	18	5	30	1.72
32516249--32516383	29	4.6	29	81	0	153	48	8	17	25	1.75
32516249--32516389	58	2.4	59	86	1	194	49	8	16	25	1.73
32522685--32522796	57	1.9	59	89	3	174	45	8	19	26	1.78
32525523--32525870	41	8.5	41	85	4	461	25	16	23	33	1.96
32532050--32532126	38	2.0	38	97	0	145	28	1	40	29	1.65
32539200--32539287	44	2.0	44	90	0	140	37	11	4	46	1.60
32540422--32540465	19	2.3	18	84	7	52	25	2	2	70	1.10
32540480--32540522	20	2.0	22	86	8	63	58	0	2	39	1.11
32540727--32540780	23	2.4	22	75	9	54	27	1	18	51	1.56
32543368--32543455	20	4.3	20	74	7	70	54	7	2	35	1.42
32543385--32543455	21	3.4	21	74	3	81	53	9	1	35	1.43
32543663--32543700	10	3.9	10	79	6	51	36	0	2	60	1.11
32548549--32548623	18	4.3	18	68	19	50	34	1	0	64	1.02
32548578--32548630	26	2.0	26	88	0	79	28	3	0	67	1.07
32549870--32549914	23	2.0	23	82	8	56	44	6	0	48	1.29
32550029--32550073	21	2.1	22	91	4	74	62	0	8	28	1.25
32550495--32550702	10	21.4	9	64	22	50	35	1	3	59	1.25
32550533--32550570	12	3.1	13	85	11	53	28	2	0	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32550549--32550625	31	2.4	32	83	10	88	41	1	5	51	1.32
32550660--32550702	22	2.0	21	86	13	61	32	0	2	65	1.06
32551548--32551584	11	3.4	11	84	0	56	56	8	13	21	1.63
32551592--32551629	18	2.1	18	90	0	58	68	21	5	5	1.29
32554600--32555820	406	3.0	406	93	1	2072	35	16	21	26	1.94
32572174--32572223	20	2.7	18	75	24	59	50	4	2	44	1.32
32572186--32572234	25	1.9	26	84	12	66	48	6	2	42	1.39
32572174--32572268	37	2.6	38	81	9	108	51	5	3	40	1.40
32580990--32581053	29	2.2	29	82	2	74	23	26	14	35	1.93
32580998--32581053	29	1.9	29	85	0	76	25	23	16	35	1.94
32581046--32581241	30	6.5	30	77	11	186	21	25	13	40	1.89
32581075--32581265	91	2.1	88	79	4	195	21	26	13	38	1.90
32581000--32581296	120	2.5	119	83	4	384	22	24	14	38	1.92
32581227--32581296	29	2.4	29	87	0	113	22	27	12	37	1.91
32587102--32587286	86	2.2	86	91	0	298	25	27	27	20	1.99
32587378--32587407	12	2.5	12	94	0	51	6	26	43	23	1.78
32588500--32588558	30	2.0	30	82	0	73	22	20	16	40	1.91
32588549--32588714	30	5.5	30	78	11	137	23	25	12	37	1.90
32588534--32588740	90	2.3	89	80	6	231	23	25	14	37	1.92
32588502--32588723	120	1.9	120	83	0	282	23	24	14	37	1.93
32590738--32590779	21	2.0	21	90	0	66	30	28	4	35	1.78
32594178--32594230	21	2.6	20	82	11	63	67	3	1	26	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32597523--32597621	28	3.6	27	81	9	119	31	12	28	28	1.92
32598564--32598687	25	5.2	25	81	18	174	27	12	15	45	1.81
32598572--32598695	22	5.4	22	82	17	162	26	13	15	44	1.84
32598556--32598792	47	5.0	47	86	3	291	27	12	16	43	1.84
32602249--32602392	71	2.0	71	100	0	288	27	20	27	25	1.99
32603788--32603822	16	2.2	16	89	0	52	42	0	5	51	1.25
32606136--32606184	25	2.0	25	87	0	71	32	18	24	24	1.97
32613793--32613824	3	10.7	3	93	0	55	34	3	0	62	1.11
32614615--32614645	3	10.3	3	100	0	62	64	0	0	35	0.94
32621502--32621662	49	3.3	49	87	2	225	23	23	21	31	1.98
32621502--32621662	25	6.5	25	76	16	149	23	23	21	31	1.98
32624703--32624745	16	2.6	17	82	14	54	41	2	0	55	1.12
32633283--32633403	59	2.1	59	95	0	215	54	6	4	34	1.46
32635319--32635381	30	2.1	31	93	3	110	66	0	3	30	1.07
32637711--32637766	26	2.2	24	87	6	76	57	5	1	35	1.32
32637828--32637879	27	1.9	27	88	0	77	44	3	3	48	1.39
32638518--32638579	31	2.0	31	87	6	90	29	1	1	67	1.09
32640465--32640758	59	5.0	59	93	1	482	32	4	9	53	1.53
32643388--32643572	79	2.3	81	81	7	209	24	22	27	25	2.00
32643388--32643572	40	4.7	40	79	9	191	24	22	27	25	2.00
32643441--32643605	79	2.1	79	82	6	192	26	21	27	25	1.99
32647396--32647486	40	2.3	40	86	1	130	36	24	0	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32649606--32649687	25	3.4	23	66	16	58	28	12	18	41	1.86
32650428--32650452	13	1.9	13	100	0	50	56	8	16	20	1.65
32651234--32651263	6	5.0	6	100	0	60	50	0	0	50	1.00
32654367--32654741	91	4.0	95	89	4	454	45	3	2	48	1.33
32654367--32654698	47	7.3	46	69	19	214	45	3	3	47	1.35
32654367--32654664	91	3.3	91	97	0	542	46	3	3	46	1.36
32654691--32654879	59	3.2	58	66	19	154	41	3	4	50	1.37
32654680--32654975	120	2.5	120	93	1	513	43	2	5	49	1.37
32654802--32654837	18	2.1	18	89	5	56	36	2	0	61	1.11
32654925--32654966	15	2.9	15	82	10	52	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170