genome.fa.s16.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  98  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30587966--30588094	45	2.9	44	77	11	145	28	27	16	27	1.97
30588242--30588439	100	2.0	100	89	4	301	24	25	21	28	1.99
30600299--30600337	19	2.1	18	90	4	60	56	0	5	38	1.22
30601724--30601765	20	2.0	22	86	9	61	45	0	0	54	0.99
30601778--30601808	15	2.0	16	93	6	55	61	0	0	38	0.96
30601822--30601878	15	3.5	15	71	17	51	49	1	1	47	1.22
30602736--30602952	96	2.3	96	80	3	249	31	33	20	14	1.93
30602729--30602953	48	4.7	48	80	0	225	30	34	20	14	1.92
30608547--30608585	18	2.1	18	86	13	53	46	7	0	46	1.31
30610353--30610378	13	2.0	13	100	0	52	61	0	23	15	1.33
30611163--30611228	29	2.3	28	86	2	87	28	4	4	62	1.35
30613529--30613562	17	2.1	16	88	5	50	58	5	5	29	1.45
30614077--30614155	31	2.5	31	81	10	88	39	29	0	31	1.57
30624744--30624996	69	3.7	69	77	5	217	37	11	35	15	1.84
30627196--30627229	16	2.1	16	89	10	52	38	5	2	52	1.41
30632160--30632195	19	1.9	18	88	5	54	58	5	5	30	1.44
30640407--30640447	21	1.9	22	95	5	75	29	12	0	58	1.34
30641341--30641394	26	2.1	26	92	0	90	33	20	20	25	1.97
30647597--30647740	74	2.0	72	87	4	209	15	9	15	58	1.63
30648587--30648626	19	2.1	19	86	9	55	20	2	2	75	1.04
30661836--30662186	44	8.3	43	77	11	284	28	21	22	28	1.99
30662169--30662253	44	1.9	44	90	0	134	36	17	21	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30670963--30670999	19	2.0	19	89	5	58	27	18	0	54	1.44
30673053--30673095	22	2.0	22	81	9	52	25	11	4	58	1.52
30674004--30674055	15	3.2	15	73	19	50	44	0	1	53	1.11
30674091--30674141	17	2.9	18	74	8	52	60	1	0	37	1.08
30678866--30678933	26	2.8	25	78	14	79	44	1	0	54	1.09
30682725--30682751	3	9.0	3	100	0	54	0	33	0	66	0.92
30688480--30688537	9	6.4	9	85	0	62	39	24	10	25	1.87
30688702--30688756	27	2.0	27	96	0	101	38	1	25	34	1.67
30688759--30688836	38	2.0	39	95	2	140	17	2	28	51	1.59
30688817--30688841	13	1.9	13	100	0	50	12	0	48	40	1.40
30689960--30690024	32	2.0	32	90	0	103	16	18	21	43	1.88
30691403--30691466	19	3.3	19	89	8	101	39	9	14	37	1.78
30691404--30691479	21	3.7	21	92	3	120	40	10	11	36	1.76
30691471--30691515	21	2.0	23	83	8	58	37	4	13	44	1.64
30691672--30691710	19	2.0	21	85	10	55	15	10	5	69	1.34
30691916--30691968	3	18.0	3	78	18	58	32	0	0	67	0.91
30692227--30692341	51	2.3	50	82	8	128	32	5	6	56	1.46
30698577--30698616	17	2.4	17	91	0	62	72	2	15	10	1.21
30698579--30698623	8	5.6	8	79	10	56	73	2	13	11	1.19
30700056--30700250	44	4.4	44	65	12	112	31	19	23	26	1.98
30699889--30700286	132	3.0	132	92	1	665	30	19	24	24	1.98
30700572--30700628	21	2.7	21	86	0	78	40	7	15	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30700822--30700860	19	2.0	21	85	10	55	15	10	5	69	1.34
30701083--30701128	3	15.3	3	86	8	67	32	0	0	67	0.91
30701067--30701124	15	3.7	15	76	13	55	31	0	1	67	1.01
30701391--30701502	51	2.2	52	80	6	131	32	6	6	55	1.50
30709628--30709736	45	2.6	43	82	10	136	33	4	29	32	1.78
30709871--30709912	15	2.9	15	82	10	52	52	0	0	47	1.00
30710019--30710277	47	5.7	46	69	19	184	47	3	3	46	1.33
30710079--30710134	26	2.2	25	84	12	69	50	1	0	48	1.11
30710053--30710298	91	2.7	91	94	0	429	47	2	2	47	1.32
30711663--30711723	23	2.7	23	94	0	104	14	19	21	44	1.86
30715984--30716037	20	2.6	21	85	5	74	37	7	7	48	1.59
30716892--30717030	41	3.4	41	90	0	197	25	25	20	28	1.99
30724557--30724670	41	2.8	41	82	1	147	26	25	20	28	1.99
30725356--30725647	114	2.6	114	95	0	512	26	21	26	25	2.00
30725939--30725977	15	2.5	15	91	4	60	23	0	46	30	1.53
30726180--30726230	14	3.5	15	76	7	52	31	0	31	37	1.58
30726246--30726286	14	2.9	14	82	13	57	24	0	43	31	1.54
30726565--30727848	240	5.3	241	93	2	2145	46	13	13	26	1.80
30729976--30730165	95	2.0	94	85	2	254	15	24	14	45	1.83
30731487--30731757	43	6.3	44	87	5	306	27	16	23	32	1.96
30731848--30731891	22	2.0	22	86	0	61	47	27	15	9	1.76
30743672--30743707	17	2.1	17	100	0	72	25	11	5	58	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30745364--30745457	45	2.1	45	87	0	134	32	22	18	26	1.97
30745459--30745580	51	2.4	51	84	0	154	33	27	15	22	1.95
30749074--30749109	18	2.0	18	88	0	54	55	11	13	19	1.68
30751249--30751300	19	2.7	19	82	8	61	36	0	5	57	1.23
30758962--30759034	30	2.5	29	76	12	76	16	5	2	75	1.11
30759540--30759870	108	3.1	107	84	5	456	32	16	16	33	1.92
30760091--30760124	15	2.3	15	90	10	52	70	5	0	23	1.09
30760261--30760301	5	8.8	5	89	7	52	75	0	2	21	0.92
30761366--30761399	15	2.2	16	94	5	61	0	5	8	85	0.75
30770116--30770155	13	3.1	13	81	0	53	37	25	5	32	1.77
30774533--30774570	16	2.3	17	90	4	60	50	0	10	39	1.37
30776974--30777008	17	2.1	17	100	0	70	34	11	20	34	1.88
30781433--30781463	4	8.0	4	92	7	55	22	0	0	77	0.77
30782048--30782106	16	3.6	16	81	9	57	74	0	18	6	1.03
30782052--30782106	12	5.0	11	82	10	51	74	0	20	5	1.01
30782069--30782106	6	6.7	6	93	3	53	76	0	23	0	0.79
30782069--30782115	6	7.8	6	90	4	51	74	0	25	0	0.82
30782149--30782246	33	2.9	32	90	4	142	56	4	28	11	1.53
30782170--30782222	16	3.3	15	74	23	54	60	1	24	13	1.43
30782144--30782265	33	3.7	31	82	8	129	54	4	30	10	1.56
30786216--30786275	24	2.5	24	83	2	68	51	16	13	18	1.76
30793548--30793607	30	2.0	30	90	0	93	28	36	8	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30804192--30804243	27	1.9	27	100	0	104	23	3	15	57	1.54
30805539--30805579	16	2.6	16	100	0	82	24	29	4	41	1.75
30807412--30807455	16	2.6	17	85	7	63	29	0	4	65	1.12
30808437--30808493	28	2.0	28	82	0	69	47	3	7	42	1.47
30810505--30810597	18	5.2	18	90	0	150	26	23	17	32	1.96
30810505--30810597	36	2.6	36	96	0	168	26	23	17	32	1.96
30819378--30819417	14	3.1	13	86	10	55	62	5	0	32	1.17
30822861--30822937	38	2.0	39	84	2	102	33	20	25	19	1.96
30822218--30823231	398	2.6	399	92	1	1662	33	15	20	30	1.94
30835578--30835609	17	1.9	16	93	6	55	46	0	0	53	1.00
30835720--30835764	21	2.1	21	91	0	72	53	11	6	28	1.61
30841144--30841168	10	2.5	10	100	0	50	8	20	8	64	1.46
30847240--30847273	17	2.0	17	94	0	59	5	0	50	44	1.26
30851857--30851906	17	2.7	20	78	18	70	10	0	44	46	1.37
30853771--30853806	14	2.6	14	95	0	63	72	0	11	16	1.12
30854151--30854183	17	1.9	17	88	11	50	60	0	0	39	0.97
30854732--30854771	13	3.2	12	89	3	53	37	2	0	60	1.11
30855546--30855578	17	1.9	17	100	0	66	48	0	9	42	1.35
30860926--30860976	19	2.6	20	78	6	59	47	11	7	33	1.69
30860916--30860973	19	3.0	20	77	10	57	44	13	10	31	1.78
30868957--30869008	20	2.6	20	78	0	50	46	11	5	36	1.64
30869172--30869215	22	2.1	22	87	8	65	43	11	6	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30881182--30881345	87	1.9	87	86	2	233	32	23	17	27	1.96
30886297--30886386	44	2.1	43	87	6	128	28	11	7	52	1.65
30890883--30890932	24	2.1	24	100	0	100	46	4	22	28	1.70
30899116--30899144	2	14.5	2	100	0	58	51	0	0	48	1.00
30900948--30901107	79	2.0	79	100	0	320	36	5	7	51	1.52
30902660--30902695	17	2.1	17	100	0	72	11	11	11	66	1.45
30903095--30903158	33	1.9	34	87	6	96	43	17	4	34	1.69
30903926--30904000	23	3.4	23	70	26	72	22	6	25	45	1.77
30903920--30904012	42	2.2	41	78	10	100	20	5	23	50	1.68
30908216--30908424	92	2.3	91	86	5	278	45	3	3	46	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170