genome.fa.s16.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  158  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46811252--46811305	20	2.7	20	82	2	72	14	14	0	70	1.17
46816418--46816467	21	2.4	22	80	10	59	62	0	12	26	1.30
46839700--46839724	12	2.1	12	100	0	50	16	0	36	48	1.46
46839867--46839902	15	2.4	15	95	0	63	55	5	22	16	1.62
46840851--46840939	32	2.8	31	84	3	115	52	6	10	30	1.61
46840937--46840988	23	2.4	22	90	6	79	57	15	11	15	1.65
46845892--46845916	12	2.1	12	100	0	50	52	40	0	8	1.31
46863888--46863930	21	2.0	21	82	8	52	23	18	27	30	1.98
46890176--46890203	14	2.0	14	100	0	56	21	7	28	42	1.79
46894804--46894836	17	2.0	16	94	5	57	51	0	0	48	1.00
46898497--46898525	2	14.5	2	100	0	58	48	0	51	0	1.00
46901569--46901602	18	1.9	17	94	5	59	55	0	0	44	0.99
46906235--46906286	20	2.6	21	78	6	63	38	23	3	34	1.73
46910013--46910134	57	2.1	56	83	9	145	35	19	21	23	1.96
46910046--46910154	57	1.9	57	86	3	157	31	19	25	23	1.98
46911082--46911140	9	6.4	9	79	11	57	23	10	23	42	1.85
46912161--46912215	26	2.1	26	100	0	110	25	14	10	49	1.76
46913086--46913118	16	2.1	16	100	0	66	0	27	12	60	1.32
46929889--46929918	15	2.0	15	93	0	51	40	3	13	43	1.60
46934972--46934998	6	4.5	6	100	0	54	62	0	0	37	0.95
46947390--46947600	105	2.0	105	98	0	404	38	10	6	44	1.65
46949049--46949089	20	2.0	21	90	4	66	56	0	4	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46951911--46952002	19	4.8	19	91	0	139	40	8	13	38	1.75
46951911--46952028	19	5.9	21	87	5	99	38	7	14	38	1.75
46955310--46955352	9	4.9	9	86	8	54	48	2	0	48	1.14
46964233--46964320	20	4.4	20	75	9	74	44	4	6	44	1.51
46964540--46964596	20	2.9	20	76	2	53	42	5	12	40	1.65
46964574--46964661	20	4.4	19	73	12	70	32	6	15	44	1.73
46964575--46964662	39	2.2	41	82	8	101	32	6	15	44	1.73
46964708--46964754	20	2.3	20	92	0	76	44	10	10	34	1.74
46964702--46964759	20	2.9	19	84	5	71	41	12	10	36	1.76
46964808--46964883	20	3.8	19	71	8	53	38	6	11	43	1.68
46966378--46966449	31	2.3	30	77	11	74	29	23	11	36	1.89
46982668--46982735	34	2.0	35	85	2	93	33	7	11	47	1.68
46983693--46983737	23	2.0	23	82	8	56	33	26	0	40	1.57
46984780--46984811	5	6.6	5	92	7	57	59	0	0	40	0.97
46986788--46986844	25	2.3	25	81	3	71	12	10	14	63	1.53
46986806--46986869	25	2.5	26	82	7	69	6	7	17	68	1.35
46988184--46988217	4	8.0	4	90	9	50	23	0	2	73	0.97
46988167--46988226	22	2.7	22	73	19	61	26	0	6	66	1.16
46993853--46993910	21	2.7	22	76	12	59	17	15	8	58	1.61
47002574--47002599	12	2.2	12	100	0	52	30	7	19	42	1.79
47005372--47005417	21	2.2	21	88	7	67	30	43	2	23	1.66
47009093--47009131	16	2.3	16	86	8	51	20	2	2	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47019419--47019576	74	2.1	74	90	1	246	22	12	10	54	1.68
47019849--47020409	114	4.9	111	76	10	454	30	18	24	26	1.97
47020515--47020550	18	2.0	18	89	10	56	25	0	5	69	1.10
47020868--47020894	14	1.9	14	100	0	54	29	0	25	44	1.54
47021466--47021527	7	8.7	7	82	10	72	6	0	50	43	1.28
47023828--47023860	16	2.1	16	94	0	57	27	12	9	51	1.69
47023925--47024063	67	2.1	67	95	2	253	36	5	12	45	1.65
47024103--47024341	75	3.0	80	84	8	260	39	5	2	51	1.41
47024188--47024341	75	2.1	75	96	3	285	38	7	3	50	1.48
47024372--47024420	13	3.8	12	82	15	53	44	10	2	42	1.49
47024668--47024869	16	12.1	16	64	24	71	47	18	2	31	1.62
47024761--47024982	9	25.4	9	68	14	135	45	20	2	31	1.65
47024803--47024853	25	2.0	25	88	0	75	52	19	0	27	1.46
47024802--47024928	62	2.0	62	82	7	150	47	22	0	29	1.57
47024905--47024960	25	2.2	25	83	0	67	44	21	1	32	1.63
47030509--47030558	21	2.4	21	86	0	73	40	18	40	2	1.62
47030978--47031147	43	4.0	43	88	1	261	22	20	22	35	1.96
47030978--47031145	85	2.0	85	91	2	275	22	20	22	34	1.97
47041236--47041265	15	2.0	15	93	0	51	46	3	16	33	1.64
47053388--47053460	21	3.4	21	72	7	74	39	6	5	47	1.53
47053388--47053458	23	3.2	22	67	16	65	40	7	5	46	1.54
47053386--47053476	44	2.1	44	89	2	139	42	6	6	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47055681--47055739	29	2.0	30	83	6	77	55	1	6	35	1.36
47058230--47058290	31	2.0	31	86	0	86	42	8	9	39	1.68
47064910--47065194	142	2.0	142	100	0	570	32	10	24	31	1.89
47070370--47070465	49	2.0	49	83	6	124	34	4	15	45	1.65
47070418--47070530	59	1.9	58	82	5	138	38	5	10	45	1.62
47074683--47074746	4	16.0	4	100	0	128	50	25	0	25	1.50
47079802--47079861	26	2.3	25	83	8	75	16	28	20	35	1.94
47083148--47083200	25	2.1	25	82	0	61	16	32	16	33	1.92
47083184--47083236	25	2.1	25	82	0	61	24	20	16	37	1.93
47088339--47088386	21	2.3	22	89	7	73	12	12	2	72	1.20
47093102--47093159	31	2.0	28	80	12	64	44	3	5	46	1.42
47096287--47096567	46	6.6	46	79	16	345	28	21	14	35	1.93
47096377--47096531	36	4.0	36	78	15	184	27	20	14	36	1.92
47096331--47096567	82	2.9	82	94	0	420	28	21	13	35	1.92
47096287--47096531	128	2.0	122	86	9	340	28	21	15	35	1.94
47100755--47100798	23	1.9	23	95	0	79	25	6	27	40	1.80
47103526--47103550	9	2.8	9	100	0	50	12	64	24	0	1.27
47107727--47107760	6	5.5	6	86	6	50	64	0	0	35	0.94
47113086--47113150	29	2.2	31	86	5	89	46	3	3	47	1.33
47115832--47115966	66	2.0	66	95	0	243	34	14	22	29	1.93
47120225--47120282	30	1.9	31	92	3	100	29	3	12	55	1.53
47125922--47126036	10	11.4	10	70	24	64	68	0	30	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47125933--47126037	14	7.2	14	67	25	58	70	0	28	0	0.94
47125933--47126043	5	22.8	5	70	11	52	70	0	27	1	0.98
47125921--47126032	38	3.0	37	81	11	138	67	0	31	0	0.96
47125930--47126051	41	3.0	41	80	8	124	69	0	28	1	0.98
47125937--47126032	10	9.1	10	75	15	77	69	0	29	1	0.95
47126611--47126982	154	2.4	154	91	4	585	50	5	12	32	1.62
47126410--47127009	154	4.0	153	75	12	544	50	6	10	32	1.62
47128661--47128691	12	2.6	12	94	0	53	25	45	29	0	1.54
47133916--47133945	7	4.3	7	91	0	51	43	3	0	53	1.17
47139403--47139442	7	5.6	7	82	5	53	15	0	5	80	0.88
47139626--47139672	24	1.9	25	82	4	60	46	0	2	51	1.13
47140383--47140476	48	2.0	48	85	8	129	17	10	27	44	1.81
47142892--47142985	48	2.0	48	85	8	129	18	12	26	42	1.86
47143243--47143288	19	2.5	19	85	3	58	30	0	0	69	0.89
47143385--47143490	27	3.9	27	84	0	131	18	21	34	24	1.96
47146508--47146580	33	2.2	33	82	0	92	28	15	43	12	1.82
47146714--47146757	18	2.5	17	78	10	52	6	40	25	27	1.80
47146723--47146756	12	2.8	12	81	0	50	2	41	26	29	1.70
47148579--47148618	18	2.4	16	88	12	55	70	5	2	22	1.19
47148642--47148919	102	2.7	103	85	7	386	55	15	1	27	1.47
47148871--47148972	29	3.5	29	71	18	86	52	19	0	26	1.52
47149118--47149203	42	2.0	42	95	0	154	51	9	1	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47150756--47150815	30	2.0	30	83	6	77	36	1	3	58	1.25
47157569--47157629	18	3.1	19	75	15	61	60	0	1	37	1.07
47160463--47160492	15	2.1	15	93	6	53	43	0	0	56	0.99
47163917--47164048	64	2.1	64	95	0	237	36	16	21	25	1.94
47185251--47185296	3	15.3	3	100	0	92	67	0	0	32	0.91
47189286--47189337	26	2.0	26	96	0	95	13	23	34	28	1.92
47189104--47189369	104	2.6	104	93	0	453	18	20	30	30	1.96
47196582--47196848	104	2.6	104	94	1	464	18	20	30	30	1.96
47198541--47198579	21	1.9	20	84	5	51	38	0	0	61	0.96
47201115--47201161	21	2.4	18	86	10	58	25	4	23	46	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170