genome.fa.s16.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  115  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35355691--35355726	17	2.1	17	94	0	63	69	11	8	11	1.37
35365975--35365999	3	8.3	3	100	0	50	0	0	32	68	0.90
35369712--35369741	14	2.1	14	100	0	60	33	0	30	36	1.58
35376199--35376248	23	2.2	23	100	0	100	28	24	0	48	1.52
35377214--35377364	41	3.7	41	93	0	257	30	21	19	27	1.98
35391163--35391274	59	1.9	59	92	0	188	43	8	20	26	1.81
35398843--35398876	17	2.0	17	100	0	68	23	17	41	17	1.90
35401599--35401758	82	2.0	82	100	0	320	35	17	20	26	1.95
35405464--35405534	35	2.0	35	100	0	142	46	5	11	36	1.63
35409230--35409264	18	1.9	18	88	0	52	2	28	0	68	1.04
35412881--35412919	17	2.4	16	84	16	53	41	2	7	48	1.45
35414853--35414879	6	4.5	6	100	0	54	48	0	33	18	1.49
35414808--35414879	12	6.0	12	79	6	56	43	4	34	18	1.69
35418711--35418758	19	2.5	20	80	10	55	31	14	16	37	1.89
35423458--35423546	43	2.1	43	95	0	160	41	12	16	29	1.85
35427326--35427386	24	2.8	21	79	13	77	29	26	13	31	1.93
35427340--35427386	24	2.0	24	100	0	94	31	25	12	29	1.93
35427313--35427394	21	3.8	21	79	9	92	29	23	14	32	1.94
35427379--35427411	17	1.9	17	93	0	57	30	15	18	36	1.91
35429790--35429894	49	2.1	49	82	0	120	25	17	25	31	1.97
35433828--35433865	20	1.9	20	89	10	60	44	0	0	55	0.99
35438173--35438211	6	6.5	6	100	0	78	33	0	17	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35468615--35468666	24	2.1	24	85	3	68	51	1	1	44	1.23
35468735--35468783	16	3.1	16	82	8	64	42	4	28	24	1.73
35468933--35468957	3	8.3	3	100	0	50	36	0	0	64	0.94
35468974--35469115	56	2.5	57	78	12	150	50	4	0	45	1.21
35471982--35472009	13	2.2	13	100	0	56	42	32	0	25	1.55
35472098--35472168	36	2.0	36	97	0	133	23	22	28	25	2.00
35472572--35472617	17	2.6	17	86	6	56	65	6	21	6	1.39
35475541--35475583	18	2.4	18	88	0	59	18	27	9	44	1.80
35476142--35476725	21	27.4	21	85	3	690	44	27	0	26	1.57
35476142--35476725	64	9.1	64	84	4	675	44	27	0	26	1.57
35476145--35476727	107	5.5	106	83	6	691	44	27	0	27	1.57
35476676--35476752	27	3.1	26	75	21	92	44	28	2	24	1.67
35476142--35476725	43	13.7	43	84	4	697	44	27	0	26	1.57
35476794--35477000	112	1.8	112	93	0	360	44	8	7	39	1.63
35485928--35486125	50	3.8	50	82	4	207	29	21	27	22	1.99
35489230--35489277	25	1.9	25	95	0	87	41	16	20	20	1.90
35492956--35493020	30	2.2	29	84	13	80	61	1	3	33	1.21
35497262--35497307	4	11.0	4	95	4	74	0	0	23	76	0.79
35502298--35502342	16	2.8	15	83	12	54	51	0	4	44	1.21
35502304--35502343	17	2.4	17	91	8	64	60	0	2	37	1.11
35515433--35515478	22	2.0	24	83	8	60	26	28	0	45	1.54
35519859--35519928	23	2.9	23	79	10	70	27	21	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35520398--35520456	30	2.0	30	93	0	100	13	10	20	55	1.66
35526784--35526814	15	2.1	15	100	0	62	41	12	6	38	1.69
35532659--35532920	131	2.0	131	82	7	318	38	24	7	29	1.82
35542587--35542668	30	2.7	30	81	3	85	29	9	20	40	1.85
35555185--35555227	15	3.0	15	81	18	56	58	0	0	41	0.98
35555186--35555229	22	2.0	21	83	12	54	59	0	0	40	0.98
35555188--35555238	15	3.5	14	81	10	50	58	1	0	39	1.09
35561660--35562129	235	2.0	233	93	0	796	42	14	10	32	1.80
35565729--35565839	35	3.1	35	85	1	150	40	28	12	18	1.87
35569319--35569472	11	14.9	11	69	20	100	38	1	0	59	1.09
35569265--35569472	31	5.6	39	79	16	214	36	2	0	61	1.09
35569265--35569361	9	10.0	9	70	16	52	30	2	0	67	1.03
35569349--35569472	63	2.0	62	93	4	214	38	2	0	58	1.11
35576871--35576915	23	2.0	23	81	0	54	22	0	15	62	1.33
35577143--35577177	3	11.7	3	93	0	61	31	0	0	68	0.90
35577217--35577261	21	2.1	21	91	0	72	33	4	8	53	1.52
35581883--35581915	14	2.3	15	89	5	50	27	12	33	27	1.92
35583234--35583450	44	4.9	45	63	6	129	27	28	24	19	1.99
35583264--35583405	43	3.3	43	63	3	104	25	28	27	18	1.98
35583234--35583455	88	2.5	88	94	0	399	27	27	24	19	1.99
35583467--35583587	44	2.7	43	86	5	154	28	18	25	28	1.98
35584081--35584378	44	6.8	44	73	12	168	30	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35583951--35584289	44	7.8	44	72	13	182	31	20	19	28	1.97
35583936--35584413	217	2.2	217	84	5	594	31	20	20	27	1.97
35583936--35584467	217	2.5	217	82	6	587	31	19	20	28	1.97
35584724--35584799	21	3.7	21	94	3	129	38	9	14	38	1.78
35585193--35585227	16	2.3	15	90	5	52	14	0	5	80	0.89
35585294--35585326	7	4.7	7	88	11	50	18	0	0	81	0.68
35585288--35585326	13	2.9	14	85	11	55	20	0	0	79	0.73
35586930--35587014	19	4.7	19	72	13	74	64	2	1	31	1.13
35587206--35587314	10	11.1	10	67	15	50	29	6	0	63	1.25
35587209--35587298	29	3.1	28	83	10	94	28	6	1	63	1.27
35587267--35587314	20	2.4	20	92	0	78	27	4	0	68	1.07
35587328--35587382	19	2.8	19	76	13	58	30	0	5	63	1.17
35594193--35594265	37	2.0	37	91	5	121	34	16	12	36	1.86
35597054--35597105	15	3.2	15	73	19	50	44	1	0	53	1.11
35597097--35597144	13	3.8	12	78	10	51	56	0	0	43	0.99
35602028--35602152	46	2.7	46	81	3	144	24	24	18	32	1.97
35602117--35602335	94	2.3	94	81	6	239	29	22	15	32	1.95
35610297--35610339	22	2.0	22	90	0	68	46	16	2	34	1.60
35614031--35614073	22	2.0	22	85	0	59	44	16	4	34	1.68
35627520--35627749	84	2.7	84	82	6	218	42	15	21	20	1.88
35627851--35628177	81	4.0	81	95	0	573	35	21	21	21	1.96
35632123--35632158	7	5.1	7	96	0	63	13	0	30	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35640266--35640337	24	3.0	23	78	11	74	25	13	30	30	1.94
35640393--35640561	28	6.0	28	74	6	137	32	18	23	25	1.97
35640372--35640546	56	3.1	56	78	1	190	32	16	24	26	1.96
35643528--35643588	23	2.5	24	76	5	61	67	4	8	19	1.36
35656983--35657034	15	3.4	15	78	5	59	1	21	0	76	0.87
35656995--35657037	14	3.0	14	89	3	59	2	25	0	72	0.97
35661865--35661901	19	1.9	19	94	0	65	35	24	21	18	1.96
35664024--35664067	18	2.4	18	88	11	63	72	2	20	4	1.13
35665831--35665906	33	2.3	33	90	2	116	36	5	13	44	1.66
35682344--35682382	17	2.5	15	84	15	60	61	0	0	38	0.96
35682349--35682382	17	2.0	17	100	0	68	58	0	0	41	0.98
35682422--35682501	28	2.8	28	81	11	92	55	2	0	42	1.13
35682329--35682588	117	2.3	113	87	9	356	50	4	1	43	1.30
35682544--35682607	32	2.0	32	81	0	74	48	3	0	48	1.17
35684226--35684351	62	2.2	54	78	20	171	34	10	8	46	1.69
35684233--35684510	64	4.4	64	95	1	465	32	9	7	50	1.64
35684626--35684700	32	2.3	32	97	0	141	41	5	12	41	1.65
35685163--35685209	12	4.2	12	84	10	64	68	12	19	0	1.21
35687230--35687278	16	3.1	16	82	11	64	42	4	32	20	1.71
35687498--35687833	120	2.8	120	96	0	627	49	5	0	44	1.31
35687635--35687673	18	2.3	17	87	12	62	53	0	0	46	1.00
35691435--35691487	24	2.2	24	87	12	74	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35697149--35697192	19	2.3	19	88	7	63	63	0	4	31	1.14
35697149--35697220	28	2.5	30	80	14	82	63	1	5	29	1.25
35697165--35697209	19	2.4	19	85	7	56	62	2	4	31	1.27
35697083--35697219	10	14.6	9	70	13	64	62	2	5	29	1.28
35697390--35697574	9	20.0	9	68	17	103	33	2	1	62	1.17
35697392--35697495	38	2.8	39	80	11	119	32	3	2	60	1.29
35697400--35697549	19	8.1	18	72	16	76	34	2	2	61	1.21
35697390--35697560	19	9.1	19	68	19	74	34	2	1	61	1.19
35698269--35698312	20	2.3	19	84	4	52	22	2	9	65	1.32
35702982--35703039	24	2.3	26	85	8	75	56	34	3	5	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170