genome.fa.s16.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  113  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34765615--34765719	42	2.5	43	84	1	131	24	19	25	30	1.98
34765574--34765732	43	3.7	43	74	15	141	25	18	27	29	1.98
34767487--34767681	42	4.7	42	77	11	168	28	15	25	29	1.96
34784092--34784227	40	3.5	40	80	9	163	27	22	22	27	1.99
34784092--34784242	39	3.8	38	79	11	144	30	23	21	24	1.99
34784206--34784567	195	1.9	195	82	3	469	33	18	19	27	1.96
34784482--34784576	40	2.4	40	82	8	113	29	21	23	26	1.99
34784663--34784723	7	8.6	7	74	3	59	26	1	22	49	1.59
34784878--34784932	21	2.6	22	88	8	87	25	9	38	27	1.86
34785096--34785212	18	7.0	17	66	21	68	56	2	0	40	1.19
34785112--34785353	119	2.0	120	95	0	441	50	4	1	42	1.32
34788442--34788495	18	3.0	18	86	5	65	44	1	53	0	1.11
34788465--34788506	18	2.3	18	100	0	84	47	0	52	0	1.00
34789000--34789053	28	1.9	28	88	0	81	20	3	24	51	1.63
34788993--34789039	21	2.2	20	79	17	51	23	2	21	53	1.57
34792497--34792630	43	3.1	41	75	14	128	28	17	22	31	1.97
34795642--34795716	36	2.1	36	84	0	96	37	1	17	44	1.57
34795831--34795998	70	2.3	70	80	7	176	26	21	23	29	1.99
34797976--34798019	18	2.4	18	85	7	54	38	2	36	22	1.67
34807122--34807156	17	2.1	17	89	5	54	20	8	0	71	1.11
34811174--34811230	23	2.4	23	85	2	69	52	3	7	36	1.46
34812860--34813381	252	2.1	252	89	1	805	27	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34813278--34813381	44	2.4	43	84	6	131	25	28	19	26	1.98
34823988--34824022	16	2.2	16	89	0	52	42	22	17	17	1.88
34825642--34825680	20	2.0	20	85	10	53	66	0	2	30	1.05
34825711--34825768	30	2.0	29	90	6	91	46	3	10	39	1.55
34828003--34828041	19	2.1	19	85	0	51	48	2	0	48	1.15
34848809--34848879	15	4.5	15	67	10	52	57	0	2	39	1.13
34848833--34848894	32	2.0	31	84	6	81	56	0	3	40	1.15
34860697--34860735	18	2.2	17	86	4	51	15	35	23	25	1.94
34860738--34860798	25	2.4	25	78	10	70	18	29	21	31	1.96
34869392--34869432	17	2.4	17	91	0	64	2	12	39	46	1.54
34874855--34874910	3	18.7	3	81	7	69	30	30	5	33	1.80
34886369--34886415	22	2.1	22	84	7	60	38	0	27	34	1.57
34887651--34887744	31	3.0	31	93	3	161	31	10	14	42	1.80
34888048--34888077	12	2.6	11	90	10	51	26	3	0	70	1.03
34899758--34899837	31	2.6	31	93	0	133	17	38	25	18	1.92
34903751--34903780	11	2.7	11	94	0	51	33	6	13	46	1.69
34903812--34903882	20	3.6	18	81	14	79	39	7	12	40	1.70
34913472--34913532	29	2.1	30	96	3	115	47	3	3	45	1.35
34913472--34913551	29	2.7	29	86	5	72	48	5	2	43	1.38
34915347--34915458	47	2.4	47	84	0	152	46	20	13	19	1.83
34917654--34918013	188	1.9	188	97	0	675	32	17	12	37	1.87
34919978--34920395	36	11.4	37	81	4	436	34	20	14	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34919978--34920351	73	5.1	72	80	4	410	34	20	14	29	1.93
34919978--34920343	146	2.5	145	86	2	491	34	20	14	29	1.93
34931486--34931686	56	3.6	56	80	1	224	36	15	12	34	1.86
34931501--34931686	84	2.2	85	85	3	243	36	15	12	35	1.86
34931508--34931658	28	5.4	28	84	3	169	37	13	12	35	1.83
34931527--34931687	28	5.8	28	84	7	166	35	16	14	34	1.89
34931533--34931707	28	6.2	28	82	6	160	34	16	14	33	1.90
34931533--34931707	56	3.1	55	77	9	183	34	16	14	33	1.90
34933023--34933077	27	2.0	27	100	0	110	38	18	10	32	1.85
34934344--34934560	108	2.0	108	97	0	407	28	26	16	28	1.97
34937686--34937740	21	2.6	21	78	15	60	32	5	9	52	1.56
34938100--34938142	18	2.4	18	80	0	50	41	6	18	32	1.77
34938407--34938489	40	2.0	42	86	9	118	66	6	6	21	1.36
34945225--34945256	16	2.0	16	93	0	55	31	6	9	53	1.58
34963709--34963749	21	2.0	21	85	0	55	21	21	17	39	1.93
34964364--34964400	10	3.7	10	88	0	56	70	2	5	21	1.20
34964354--34964403	20	2.5	19	75	9	55	74	2	4	20	1.08
34966014--34966048	15	2.3	15	90	0	52	28	31	14	25	1.95
34966180--34966253	7	10.6	7	78	12	64	28	14	0	56	1.39
34968713--34968759	19	2.4	19	86	10	60	53	6	2	38	1.39
34968738--34968785	24	2.0	24	83	0	60	45	2	2	50	1.25
34971572--34971605	14	2.5	14	95	4	61	14	0	35	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34973879--34973915	18	2.1	18	94	0	65	18	27	10	43	1.83
34973881--34973924	18	2.4	18	88	0	61	18	27	9	45	1.79
34977441--34977814	126	3.0	125	86	2	534	27	18	16	36	1.93
34977899--34978005	34	3.2	31	77	16	108	42	16	0	40	1.48
34979013--34979151	28	4.7	29	68	15	79	35	7	4	51	1.51
34979711--34979742	2	16.0	2	93	0	55	50	0	3	46	1.17
34993437--34993476	20	2.0	20	90	0	62	27	10	12	50	1.72
34993422--34993488	34	1.9	35	90	3	109	32	7	11	47	1.68
34998698--34998734	16	2.3	16	90	0	56	40	2	32	24	1.69
34998653--34998779	61	2.1	61	95	0	227	38	5	27	28	1.79
34998855--34999171	157	2.0	157	97	0	598	44	3	4	47	1.39
34999125--34999159	18	2.0	18	88	5	54	54	0	0	45	0.99
34999224--34999279	15	3.6	16	79	20	57	55	0	0	44	0.99
34999105--34999519	120	3.5	120	94	1	726	49	4	2	43	1.35
34999245--34999279	18	2.0	17	88	5	52	54	0	0	45	0.99
34999262--34999429	37	4.3	38	65	18	94	48	4	2	44	1.34
34999343--34999385	15	2.8	16	82	10	63	55	0	0	44	0.99
34999462--34999742	91	3.0	93	81	10	286	48	3	3	44	1.36
35001719--35001890	30	5.8	29	75	11	134	19	16	6	57	1.60
35001719--35001902	29	6.1	28	75	11	143	19	15	5	58	1.57
35001722--35001890	58	2.9	58	87	4	214	20	16	6	56	1.62
35001747--35001927	58	3.1	56	82	8	163	20	14	4	59	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35001943--35002003	32	1.9	32	86	0	86	26	14	6	52	1.66
35001977--35002031	28	1.9	29	81	3	67	20	16	7	56	1.63
35003840--35004065	124	1.8	123	82	2	292	36	10	7	46	1.66
35005595--35005654	31	1.9	31	83	6	77	35	11	6	46	1.67
35007375--35007510	71	1.9	71	86	3	193	38	11	8	41	1.70
35007822--35007878	30	1.9	30	88	0	87	19	42	0	38	1.51
35008585--35008618	14	2.5	14	90	4	52	70	2	26	0	1.01
35015556--35015583	5	5.6	5	100	0	56	82	0	0	17	0.68
35015974--35016007	5	6.8	5	100	0	68	61	38	0	0	0.96
35020040--35020104	29	2.2	29	94	0	112	30	26	3	40	1.71
35022272--35022305	16	2.1	16	88	5	50	52	0	8	38	1.33
35022279--35022317	20	2.0	20	90	10	62	51	0	2	46	1.14
35022950--35022992	18	2.4	18	80	7	52	46	2	0	51	1.13
35025908--35025964	6	9.5	6	79	7	62	47	3	35	14	1.61
35025900--35025959	30	2.0	30	86	0	84	43	3	40	13	1.60
35028285--35028316	7	4.6	7	96	0	55	43	34	0	21	1.53
35028458--35028523	29	2.3	29	91	0	105	39	27	7	25	1.83
35035714--35036110	175	2.3	174	86	2	544	45	7	14	31	1.73
35044981--35045205	40	5.7	40	82	6	233	25	28	21	25	1.99
35045137--35045214	40	1.9	41	82	10	97	26	28	20	24	1.99
35052874--35053094	40	5.6	39	79	5	185	24	27	21	26	1.99
35062600--35062635	16	2.2	17	90	5	56	50	0	8	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35071839--35071880	19	2.2	19	87	8	59	71	2	0	26	0.98
35073911--35074014	52	2.0	52	82	14	126	56	8	0	33	1.36
35074036--35074088	19	2.8	18	81	18	56	50	13	0	35	1.41
35082059--35082089	12	2.6	12	94	0	53	45	0	3	51	1.17
35083870--35084359	88	5.6	88	88	2	684	23	25	23	26	2.00
35084207--35084345	44	3.2	44	70	11	140	25	24	25	25	2.00
35095549--35095619	34	2.1	34	97	0	133	39	26	8	25	1.84
35107429--35107488	18	3.4	18	64	13	52	40	10	6	43	1.64
35111211--35111570	41	8.9	41	85	5	466	30	31	17	20	1.96
35111211--35111570	81	4.5	82	86	4	491	30	31	17	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170