genome.fa.s16.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  159  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47202834--47202901	34	2.0	35	94	2	120	45	11	8	33	1.72
47203991--47204034	19	2.2	21	84	8	56	54	13	22	9	1.67
47204037--47204231	99	2.0	100	94	1	347	20	23	27	29	1.98
47204456--47204501	20	2.2	21	84	3	58	52	13	23	10	1.71
47204503--47204697	99	2.0	100	94	1	347	20	23	27	29	1.98
47203771--47206094	466	5.0	466	98	0	4469	29	16	18	34	1.94
47204922--47204965	19	2.2	21	84	8	56	54	13	22	9	1.67
47204968--47205161	98	2.0	100	93	2	338	20	23	26	29	1.98
47205386--47205431	20	2.2	21	84	3	58	52	13	23	10	1.71
47205433--47205627	99	2.0	100	92	1	329	20	22	27	29	1.98
47203771--47206094	931	2.5	932	98	0	4512	29	16	18	34	1.94
47205853--47205898	20	2.2	21	88	3	67	52	13	26	8	1.69
47205900--47206095	100	2.0	99	90	1	311	18	21	28	31	1.97
47210537--47210571	18	1.9	18	88	11	54	60	0	2	37	1.12
47211942--47211967	9	2.9	9	100	0	52	57	7	0	34	1.27
47213691--47213732	21	2.0	21	85	0	57	40	0	19	40	1.51
47214099--47214145	25	1.9	25	86	4	69	19	23	17	40	1.91
47214220--47214287	26	2.7	25	84	4	84	16	27	22	33	1.95
47217147--47217185	20	2.0	20	85	10	53	28	10	15	46	1.78
47218257--47218565	162	1.9	162	100	0	618	53	6	5	34	1.50
47218644--47218670	5	5.4	5	100	0	54	18	0	22	59	1.38
47219658--47219696	18	2.2	18	86	9	53	28	0	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47219616--47219840	19	11.6	18	68	21	102	32	3	4	59	1.33
47219616--47219840	10	23.1	9	68	22	102	32	3	4	59	1.33
47224101--47224133	2	16.5	2	100	0	66	51	0	48	0	1.00
47227573--47227640	16	4.2	16	92	0	118	27	0	33	38	1.57
47227856--47227910	15	3.4	16	80	16	53	50	1	0	47	1.11
47227876--47227910	18	2.0	17	88	5	52	54	0	0	45	0.99
47227996--47228030	18	2.0	17	88	5	52	54	0	0	45	0.99
47227891--47228081	61	3.2	60	67	20	155	48	5	2	43	1.38
47227854--47228137	120	2.4	120	90	2	446	48	4	1	44	1.34
47230047--47230083	19	1.9	19	94	0	65	29	18	18	32	1.96
47231113--47231142	15	2.0	15	93	0	51	50	20	23	6	1.71
47237838--47237899	22	2.8	22	80	9	56	56	1	3	38	1.25
47237848--47237899	22	2.3	22	83	9	61	55	1	3	38	1.29
47237861--47237899	11	3.5	11	85	3	51	53	2	2	41	1.28
47241707--47241778	16	4.5	16	81	6	92	40	6	23	29	1.81
47241707--47241778	32	2.2	32	90	4	110	40	6	23	29	1.81
47242024--47242056	17	1.9	17	100	0	66	63	0	0	36	0.95
47242834--47242877	17	2.5	18	88	3	63	34	13	0	52	1.41
47247279--47247368	45	2.0	46	86	2	128	41	7	20	31	1.80
47249822--47249908	43	2.0	43	95	0	156	51	8	14	25	1.70
47257893--47257934	21	2.0	21	86	4	59	23	7	11	57	1.59
47260323--47260387	31	2.0	33	85	5	89	43	4	6	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47267946--47267990	19	2.3	19	84	3	63	64	0	2	33	1.06
47275847--47275933	25	3.5	25	84	6	113	33	17	28	20	1.95
47278536--47278811	99	2.8	97	77	4	293	27	12	35	24	1.91
47283139--47283180	15	2.7	16	82	14	52	45	0	2	52	1.13
47283130--47283171	15	2.9	15	82	10	52	47	0	0	52	1.00
47283394--47283447	16	3.4	16	89	0	81	27	33	1	37	1.68
47283508--47283575	9	7.6	9	86	0	82	23	8	25	42	1.82
47283500--47283575	18	4.2	18	86	0	98	23	7	25	43	1.80
47283508--47283575	27	2.5	27	90	0	100	23	8	25	42	1.82
47284244--47284292	3	16.3	3	100	0	98	32	0	0	67	0.91
47291204--47291247	23	2.0	21	86	8	61	54	2	6	36	1.40
47291756--47292437	45	15.3	45	86	2	860	30	15	22	30	1.95
47295497--47295528	16	2.0	16	100	0	64	50	6	0	43	1.27
47301685--47301735	26	2.0	26	84	0	66	50	0	1	47	1.12
47302895--47302938	23	2.0	21	86	8	61	54	2	6	36	1.40
47303446--47303985	45	12.2	45	85	3	682	30	15	22	30	1.95
47303446--47303985	90	6.1	90	87	4	756	30	15	22	30	1.95
47306257--47306420	43	3.8	43	77	6	143	26	31	17	24	1.97
47306317--47306440	44	2.8	44	83	1	151	28	30	15	25	1.96
47306750--47306820	21	3.4	21	86	0	97	5	46	15	32	1.69
47306791--47306937	66	2.2	66	85	4	190	14	28	17	39	1.89
47306830--47306960	66	2.0	66	86	3	183	15	23	19	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47309255--47309503	9	26.8	9	66	22	74	39	0	12	47	1.46
47309248--47309517	31	9.2	31	70	21	158	40	0	11	47	1.45
47309257--47309494	56	4.2	56	79	10	272	40	0	12	46	1.47
47309345--47309377	16	2.1	16	100	0	66	30	0	24	45	1.53
47309311--47309464	50	3.0	50	84	9	150	40	0	13	44	1.49
47309372--47309463	25	3.4	25	75	16	103	41	1	10	46	1.46
47309253--47309517	115	2.3	112	82	10	318	40	0	11	47	1.45
47310309--47310366	16	3.6	16	80	0	62	25	18	43	12	1.85
47310308--47310380	32	2.4	30	76	15	76	26	19	41	13	1.88
47310613--47310772	84	1.9	84	89	6	254	30	23	18	26	1.98
47311174--47311226	20	2.6	20	79	8	54	24	1	7	66	1.28
47311673--47311703	14	2.1	15	94	5	55	38	32	0	29	1.57
47312449--47313137	114	6.2	114	86	6	962	28	23	19	29	1.98
47312449--47313089	330	2.0	328	91	2	1011	28	23	19	28	1.98
47313393--47313427	3	11.7	3	100	0	70	34	0	0	65	0.93
47314300--47314344	17	2.4	20	76	23	53	48	0	4	46	1.22
47324534--47324594	31	1.9	33	83	6	81	39	3	4	52	1.39
47333967--47333997	16	1.9	16	93	0	53	35	0	19	45	1.51
47334045--47334139	46	2.0	47	97	2	183	26	8	28	36	1.85
47334526--47334556	9	3.4	9	90	0	53	25	12	22	38	1.90
47334609--47334645	9	4.1	9	89	0	56	45	10	10	32	1.74
47335665--47335690	5	5.2	5	100	0	52	19	19	19	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47338363--47338413	21	2.4	21	87	6	77	56	7	23	11	1.61
47339901--47339951	18	2.6	19	75	15	50	31	11	3	52	1.56
47341364--47341499	46	3.0	46	82	2	166	29	19	22	29	1.98
47347746--47347800	19	2.9	19	83	5	76	40	0	5	54	1.23
47347746--47347813	20	3.5	19	83	4	82	39	0	5	54	1.25
47347733--47347828	39	2.4	39	73	11	97	38	0	5	56	1.22
47350433--47350496	24	2.7	24	97	0	119	37	21	29	10	1.88
47353140--47353244	53	2.0	52	94	1	183	41	28	14	15	1.86
47353687--47353731	3	15.0	3	95	0	81	64	0	33	2	1.06
47354878--47354923	23	2.0	24	84	16	62	21	6	2	69	1.22
47361920--47362086	46	3.7	46	91	2	268	31	16	22	28	1.96
47363042--47363199	74	2.1	74	76	4	167	32	20	26	20	1.97
47363104--47363198	26	3.8	26	72	14	74	32	21	26	20	1.97
47365492--47365561	35	2.0	35	100	0	140	20	28	22	28	1.98
47369184--47369227	23	1.9	23	100	0	88	47	13	11	27	1.77
47373807--47373847	16	2.4	18	84	8	59	48	0	0	51	1.00
47373814--47373870	24	2.4	22	80	11	60	56	0	0	43	0.99
47373835--47373870	19	1.9	18	88	5	54	58	0	0	41	0.98
47373804--47373867	30	2.2	28	83	10	85	54	0	0	45	0.99
47374982--47375018	16	2.4	16	90	4	58	64	0	0	35	0.94
47376422--47376498	39	2.0	39	97	2	147	42	18	7	31	1.78
47380775--47380800	12	2.2	12	100	0	52	7	26	7	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47385366--47385390	11	2.3	11	100	0	50	32	0	0	68	0.90
47392798--47392921	30	4.1	30	93	1	203	25	24	6	43	1.78
47392808--47392915	15	7.2	15	67	12	78	25	22	7	44	1.79
47394715--47394749	5	7.2	5	93	6	63	37	0	62	0	0.95
47396041--47396065	5	5.0	5	100	0	50	20	80	0	0	0.72
47420629--47420708	31	2.6	31	88	4	117	46	8	26	18	1.78
47422946--47423043	6	15.8	6	80	10	72	13	38	4	43	1.63
47428694--47428720	10	2.7	10	100	0	54	77	0	14	7	0.97
47429471--47429527	28	2.0	29	82	6	71	35	1	3	59	1.25
47429471--47429609	9	14.8	9	68	18	63	33	4	3	58	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170