genome.fa.s16.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  150  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44788257--44788318	30	2.1	30	90	0	97	25	3	14	56	1.53
44788442--44788472	11	2.8	11	90	0	53	67	0	0	32	0.91
44794645--44794705	31	2.0	30	87	3	86	50	11	1	36	1.48
44799282--44799306	8	3.1	8	100	0	50	12	24	12	52	1.72
44803399--44803439	12	3.5	12	80	6	57	9	14	0	75	1.04
44805553--44805604	27	1.9	27	88	0	77	26	7	9	55	1.59
44816337--44816397	29	2.1	30	96	3	115	26	13	18	42	1.86
44817725--44817769	6	7.5	6	89	0	54	62	0	22	15	1.33
44817913--44817984	26	2.8	26	91	2	119	41	8	16	33	1.78
44819494--44819544	6	8.5	6	80	8	59	11	0	3	84	0.75
44819498--44819531	14	2.5	13	86	13	50	11	0	0	88	0.52
44819470--44819531	20	3.0	20	77	15	65	16	1	1	80	0.87
44819467--44819544	24	3.1	24	83	10	77	15	1	3	79	0.94
44819470--44819550	12	6.6	11	73	23	56	13	2	3	80	0.95
44821804--44821890	31	2.9	29	70	12	77	41	17	11	29	1.84
44823031--44823066	14	2.6	14	95	0	63	52	19	5	22	1.66
44832269--44832331	9	7.4	8	75	18	56	58	1	7	31	1.36
44832291--44832332	3	13.7	3	80	14	50	64	0	4	30	1.14
44832272--44832329	15	3.9	15	76	14	59	58	1	8	31	1.38
44833941--44834130	98	1.9	98	88	4	285	30	21	14	33	1.93
44834039--44834766	218	3.3	217	91	2	1120	27	21	19	31	1.97
44834440--44834895	85	5.3	89	71	14	269	28	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44834088--44835564	44	33.7	44	69	10	425	28	21	19	30	1.97
44834606--44835043	129	3.4	129	90	1	637	29	21	17	31	1.96
44834170--44835433	574	2.2	564	85	5	1650	28	21	19	31	1.97
44835191--44835515	87	3.8	84	73	10	296	30	21	18	29	1.97
44835141--44835581	175	2.5	174	90	0	684	29	22	19	29	1.98
44835050--44835564	131	3.9	130	71	9	341	28	22	19	30	1.98
44836800--44836846	7	7.0	7	85	9	71	14	17	0	68	1.22
44836803--44836845	13	3.3	13	87	6	61	13	16	0	69	1.19
44836800--44836846	20	2.3	20	96	0	85	14	17	0	68	1.22
44842293--44842331	12	3.5	11	86	13	53	64	0	5	30	1.15
44842274--44842330	15	3.7	15	79	11	55	57	1	8	31	1.39
44843223--44843270	22	2.0	22	88	11	69	50	20	16	12	1.78
44845704--44845815	21	5.3	22	67	10	74	45	16	21	16	1.85
44845683--44845837	42	3.7	42	77	5	152	45	16	21	16	1.85
44847330--44847421	21	4.4	21	81	0	121	19	18	13	48	1.80
44847331--44847423	42	2.2	42	90	0	141	20	18	12	48	1.80
44847331--44847444	21	5.4	21	77	0	84	20	21	13	45	1.84
44850962--44851018	23	2.5	23	82	0	69	15	5	12	66	1.41
44851586--44851638	24	2.3	23	90	3	79	16	26	5	50	1.67
44857227--44857724	248	2.0	248	99	0	987	25	21	19	33	1.97
44863221--44863248	10	2.8	10	100	0	56	39	0	0	60	0.97
44864419--44864444	13	2.0	13	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44866978--44867036	30	2.0	30	96	0	109	28	5	11	54	1.58
44867167--44867199	11	2.9	12	86	13	52	66	0	0	33	0.92
44867433--44867465	14	2.3	15	89	5	50	45	0	0	54	0.99
44868578--44868621	6	7.2	6	92	2	70	15	20	0	63	1.31
44869877--44869937	27	2.2	26	80	8	68	47	4	6	40	1.51
44875863--44875929	34	1.9	35	90	3	109	32	8	13	44	1.75
44877561--44877605	3	15.0	3	80	0	54	33	4	2	60	1.29
44890096--44890732	132	4.8	132	89	1	929	29	19	24	25	1.98
44890416--44890628	44	4.8	44	67	12	123	27	20	26	25	1.99
44892400--44892465	3	22.0	3	93	0	114	33	3	0	63	1.10
44895012--44895054	3	13.7	3	85	9	59	69	0	0	30	0.88
44895006--44895054	12	4.0	12	87	10	64	71	0	0	28	0.86
44895012--44895055	19	2.3	19	92	0	70	70	0	0	29	0.88
44895012--44895051	16	2.5	15	92	8	62	70	0	0	30	0.88
44895089--44895148	29	2.1	28	84	9	77	28	20	8	43	1.80
44895507--44895561	26	2.1	26	89	0	83	45	1	1	50	1.22
44898589--44898626	16	2.4	16	90	0	58	31	0	34	34	1.58
44898605--44898699	45	2.1	44	88	1	136	32	6	27	33	1.82
44898860--44898894	18	2.0	17	88	5	52	54	0	0	45	0.99
44898747--44899061	155	2.0	157	95	1	562	44	3	5	47	1.42
44898998--44899288	118	2.4	121	90	5	450	50	5	2	41	1.39
44898998--44899167	58	2.9	57	66	18	132	51	5	1	41	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44899304--44899510	91	2.3	90	90	1	315	47	3	2	45	1.34
44900914--44900940	11	2.5	11	100	0	54	51	18	7	22	1.70
44906206--44906266	19	3.4	19	75	13	74	77	3	8	11	1.11
44906302--44906371	28	2.4	29	83	2	88	18	15	8	57	1.64
44906928--44906986	20	3.0	20	82	12	77	71	1	0	27	0.96
44907192--44907238	19	2.4	20	82	10	62	27	2	6	63	1.30
44907441--44907489	21	2.6	18	77	20	55	22	4	2	71	1.13
44907505--44907536	16	2.0	16	93	0	55	25	3	0	71	1.00
44917880--44917991	25	4.5	24	75	11	93	19	27	18	33	1.96
44917878--44917991	50	2.3	49	86	1	156	20	28	18	33	1.96
44929444--44929480	18	2.2	18	85	9	51	45	5	0	48	1.25
44929697--44929747	22	2.3	22	83	6	59	23	9	9	56	1.61
44931581--44931664	42	2.0	42	95	0	150	32	16	17	33	1.93
44933888--44933938	20	2.5	20	80	0	66	60	5	0	33	1.21
44933895--44933946	20	2.6	20	90	6	79	61	5	0	32	1.20
44938467--44938501	19	1.9	18	88	11	54	45	28	8	17	1.77
44939244--44939277	11	3.0	11	95	4	59	35	0	0	64	0.94
44939403--44939461	30	2.0	30	96	0	109	59	8	3	28	1.43
44941851--44941893	6	7.2	6	84	7	52	11	4	2	81	0.93
44942533--44942608	3	25.3	3	77	5	73	27	2	5	64	1.28
44942783--44942817	17	2.1	17	94	0	61	17	2	0	80	0.84
44944027--44944094	33	2.1	33	100	0	136	55	5	16	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44944027--44944109	33	2.5	33	90	2	94	54	6	14	25	1.63
44944202--44944250	20	2.5	20	83	6	55	67	0	2	30	1.02
44945883--44946228	173	2.0	173	94	0	611	20	18	18	42	1.90
44946998--44947044	19	2.5	19	86	6	60	25	19	10	44	1.82
44948942--44948997	27	2.1	27	96	0	103	19	16	3	60	1.49
44949791--44949908	51	2.3	48	80	13	130	70	0	1	27	0.97
44949785--44949939	41	3.5	42	74	18	143	65	0	2	31	1.11
44950781--44950871	1	91.0	1	68	0	56	84	0	15	0	0.62
44950784--44950871	9	9.8	9	75	9	74	84	0	15	0	0.63
44950781--44950869	13	6.7	13	82	12	110	84	0	15	0	0.63
44950781--44950871	15	5.8	17	81	12	83	84	0	15	0	0.62
44950781--44950871	42	2.2	42	84	9	123	84	0	15	0	0.62
44952162--44952795	49	12.8	48	68	8	302	30	22	22	23	1.99
44952162--44952837	297	2.3	299	85	4	925	30	22	22	23	1.99
44952162--44952862	100	7.0	100	85	3	887	30	23	22	23	1.99
44952709--44953034	172	1.9	172	80	3	379	29	23	21	26	1.99
44954705--44954777	3	24.3	3	73	5	58	26	2	6	64	1.32
44954705--44954772	12	5.7	12	81	6	75	26	2	5	64	1.30
44955017--44955053	19	1.9	19	88	0	56	24	5	0	70	1.08
44955059--44955093	18	1.9	18	88	0	52	25	17	5	51	1.67
44961628--44961806	45	4.0	45	89	2	245	20	18	19	41	1.90
44962319--44962350	15	2.3	15	89	10	50	40	0	18	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44963782--44963847	26	2.5	26	79	11	64	34	22	25	16	1.95
44967860--44967970	24	4.6	24	78	6	125	28	18	25	27	1.98
44967908--44967995	25	3.6	25	76	11	101	31	19	26	22	1.98
44967886--44967997	49	2.3	49	93	3	190	31	20	25	23	1.98
44979947--44979996	12	4.2	12	71	19	50	10	12	28	50	1.71
44980156--44980383	62	3.7	62	80	1	244	27	27	26	18	1.98
44987156--44987386	62	3.7	62	77	2	230	24	25	28	22	1.99
44993101--44993394	69	4.3	69	87	0	392	42	13	16	27	1.86
44993405--44993505	35	2.9	33	81	8	112	44	19	9	25	1.82
44994256--44994352	43	2.3	43	83	3	115	24	26	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170