genome.fa.s16.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  132  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40064461--40064567	41	2.6	41	90	0	160	21	18	22	37	1.94
40071620--40071663	22	2.0	22	90	0	70	45	13	4	36	1.64
40074560--40074589	4	7.5	4	100	0	60	23	0	26	50	1.50
40088697--40088840	27	5.3	27	85	5	168	40	20	19	19	1.92
40088697--40088840	54	2.7	54	81	6	193	40	20	19	19	1.92
40089017--40089080	26	2.5	26	78	0	74	25	21	15	37	1.93
40089186--40089245	28	2.1	29	90	3	95	25	23	23	28	2.00
40091047--40091121	26	2.9	26	86	7	107	42	13	17	26	1.86
40092759--40092804	21	2.3	20	82	10	58	30	13	8	47	1.72
40092947--40092998	20	2.6	19	82	8	59	34	13	9	42	1.77
40094168--40094253	35	2.5	35	81	9	106	45	0	4	50	1.22
40094195--40094255	24	2.5	23	80	15	61	45	0	4	49	1.23
40095557--40095603	3	15.7	3	95	0	85	36	0	0	63	0.94
40095754--40095817	27	2.5	27	80	12	73	39	0	26	34	1.57
40102143--40102278	27	5.1	26	83	7	150	31	19	23	25	1.98
40102332--40102423	24	3.8	24	75	5	87	28	7	19	44	1.78
40104455--40104490	19	2.0	19	89	10	58	58	0	0	41	0.98
40109727--40109761	17	2.1	16	89	5	52	37	0	2	60	1.12
40123261--40123319	25	2.4	24	75	13	66	25	5	1	67	1.20
40123261--40123319	24	2.4	25	77	11	68	25	5	1	67	1.20
40123918--40123951	17	2.0	17	94	0	59	32	17	14	35	1.91
40125060--40125162	45	2.3	46	87	1	154	41	20	17	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40126305--40126361	4	13.8	4	78	7	60	3	22	0	73	0.98
40126305--40126361	21	2.7	21	97	0	105	3	22	0	73	0.98
40126311--40126369	17	3.2	17	90	9	82	5	20	0	74	1.00
40126508--40126532	5	5.0	5	100	0	50	60	0	0	40	0.97
40126535--40126560	5	5.2	5	100	0	52	19	0	0	80	0.71
40130881--40130977	44	2.2	44	81	0	113	30	4	23	41	1.73
40131247--40131288	13	3.1	14	83	10	52	73	4	0	21	1.01
40131674--40131729	25	2.3	23	81	6	67	64	1	1	32	1.14
40131666--40131704	18	2.3	18	86	8	55	58	5	0	35	1.20
40137547--40137638	43	2.1	43	95	0	166	43	7	31	17	1.77
40142125--40142385	27	9.7	26	80	8	213	44	21	16	17	1.87
40142125--40142357	54	4.4	54	82	4	240	44	21	17	16	1.86
40142135--40142357	81	2.8	80	84	5	272	43	21	17	16	1.87
40142574--40142630	26	2.2	26	84	6	71	21	21	22	35	1.96
40142581--40142653	26	2.8	26	81	8	85	19	23	23	34	1.97
40149933--40149972	17	2.4	16	88	12	55	50	7	7	35	1.59
40150184--40150352	57	3.0	57	91	0	275	21	19	13	44	1.85
40155874--40155918	22	2.0	22	87	8	65	17	6	48	26	1.72
40162941--40163120	57	3.2	57	88	0	270	21	17	12	47	1.81
40164186--40164276	15	6.1	15	69	11	62	42	6	23	27	1.78
40164182--40164263	30	2.7	30	94	0	137	46	7	21	24	1.77
40168848--40168925	15	5.2	15	67	11	61	44	7	21	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40168844--40168925	30	2.7	30	94	0	137	46	7	21	24	1.77
40172064--40172127	20	3.2	20	78	10	69	39	9	6	45	1.62
40181001--40181060	28	2.1	28	82	11	70	30	0	13	56	1.37
40181388--40181444	30	1.9	30	88	0	87	26	17	22	33	1.96
40181527--40181555	10	2.7	11	89	10	51	27	0	13	58	1.36
40182673--40182703	11	2.8	11	90	0	53	32	0	0	67	0.91
40182826--40182899	30	2.5	30	93	0	130	52	16	5	25	1.64
40182935--40182983	22	2.2	22	81	0	62	59	8	12	20	1.58
40185814--40185846	13	2.6	13	90	4	50	66	0	9	24	1.20
40186788--40186846	23	2.6	23	97	0	109	42	22	0	35	1.54
40191350--40191455	20	5.3	20	80	2	115	30	6	17	45	1.74
40191376--40191455	39	2.0	40	87	2	117	27	5	20	47	1.70
40191556--40191600	19	2.4	18	82	13	56	28	6	17	46	1.73
40191740--40191778	20	2.0	20	85	10	53	33	5	12	48	1.63
40208047--40208089	22	2.0	22	100	0	86	51	30	13	4	1.62
40213241--40213483	50	4.8	50	91	0	378	20	30	22	26	1.98
40213578--40213608	13	2.4	13	94	0	53	54	12	0	32	1.38
40213820--40213877	30	1.9	30	85	0	80	32	24	1	41	1.65
40226524--40226665	50	2.8	50	86	1	194	22	30	21	24	1.99
40228422--40228446	13	1.9	13	100	0	50	20	8	8	64	1.46
40243542--40243574	7	4.7	7	100	0	66	27	0	15	57	1.38
40247691--40247978	126	2.3	126	88	0	432	28	19	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40248010--40248343	95	3.5	97	88	5	484	39	17	1	40	1.61
40249471--40249562	41	2.2	42	92	5	161	21	10	23	43	1.84
40249968--40250000	17	1.9	17	88	11	50	21	0	33	45	1.52
40252967--40252996	6	5.0	6	100	0	60	16	0	0	83	0.65
40255661--40255706	20	2.3	20	92	0	74	65	13	2	19	1.37
40259693--40259725	9	3.7	9	91	0	57	24	6	18	51	1.68
40264741--40264788	25	1.9	25	86	0	69	35	12	25	27	1.92
40264819--40264962	25	5.8	25	77	3	146	36	17	27	18	1.93
40264793--40264932	75	1.9	75	81	3	174	35	17	25	20	1.95
40264827--40264962	50	2.7	50	87	0	191	36	17	27	19	1.94
40270951--40271097	75	2.0	75	82	5	181	37	19	23	19	1.94
40270984--40271155	25	6.9	25	80	5	186	36	17	26	19	1.94
40277951--40277999	21	2.2	22	82	10	55	38	10	4	46	1.57
40282495--40282519	3	8.3	3	100	0	50	64	0	0	36	0.94
40295554--40295639	39	2.3	38	78	11	88	55	2	2	39	1.25
40312669--40312710	19	2.2	19	87	8	59	71	2	0	26	0.98
40314764--40314818	19	2.9	19	78	21	62	38	14	5	41	1.69
40315429--40315458	15	1.9	16	93	6	53	13	40	0	46	1.43
40326490--40326525	17	2.2	17	90	5	56	44	8	0	47	1.33
40326490--40326530	16	2.5	17	88	7	59	41	7	0	51	1.30
40331049--40331091	14	2.9	15	86	6	61	23	23	23	30	1.99
40332946--40332984	15	2.6	15	88	8	53	25	10	28	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40332973--40333018	23	2.0	23	86	0	65	41	15	17	26	1.88
40333091--40333136	16	3.0	15	80	3	56	23	19	34	21	1.96
40333093--40333136	15	2.8	16	79	3	54	25	20	34	20	1.97
40335570--40335661	10	9.0	10	71	16	57	54	1	5	39	1.31
40339413--40339458	22	2.1	21	84	4	56	43	4	4	47	1.42
40339505--40339659	78	2.0	77	91	1	247	30	13	8	47	1.72
40343778--40343931	54	2.9	54	82	1	157	17	34	24	24	1.96
40359543--40359701	43	3.8	41	78	9	135	29	27	18	24	1.98
40360849--40360877	14	2.0	15	93	6	51	51	20	0	27	1.47
40367087--40367165	26	3.0	26	79	5	79	31	20	8	39	1.83
40367306--40367340	12	2.9	12	91	0	61	14	14	0	71	1.15
40378366--40378429	32	2.0	32	93	3	112	39	12	15	32	1.85
40381615--40381716	37	2.7	38	86	4	136	31	24	9	34	1.88
40382306--40382358	19	2.7	18	78	21	54	39	15	5	39	1.70
40382388--40382431	22	1.9	24	86	9	65	40	13	2	43	1.57
40383032--40383080	17	2.8	17	84	6	62	26	4	2	67	1.19
40383012--40383081	18	3.9	19	77	15	69	28	4	1	65	1.20
40383121--40383184	18	3.5	18	71	12	67	31	6	3	59	1.38
40383115--40383260	37	3.9	36	76	15	136	32	5	2	59	1.32
40383125--40383184	17	3.4	17	70	20	59	30	6	3	60	1.39
40383180--40383231	21	2.4	22	83	3	70	34	5	1	57	1.33
40383180--40383231	22	2.4	21	81	9	61	34	5	1	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40385901--40385927	7	3.9	7	100	0	54	74	0	0	25	0.83
40390794--40390874	30	2.7	30	96	0	144	44	13	7	34	1.72
40390939--40391017	9	8.8	9	85	0	113	41	26	8	22	1.83
40390939--40391017	18	4.4	18	96	0	149	41	26	8	22	1.83
40392161--40392865	29	23.9	29	86	6	963	29	0	26	43	1.57
40392161--40392865	117	6.0	117	88	6	987	29	0	26	43	1.57
40395240--40395289	22	2.3	22	93	6	84	40	0	30	30	1.57
40403846--40403890	6	7.3	6	80	14	56	17	2	0	80	0.82
40414660--40414889	114	2.0	114	95	1	415	29	9	10	50	1.69
40415032--40415147	40	2.9	40	85	0	133	17	31	18	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170