genome.fa.s16.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  154  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45889458--45889491	15	2.2	16	89	5	52	50	2	0	47	1.16
45895157--45895189	17	2.0	17	88	5	50	42	3	0	54	1.15
45896044--45896073	14	2.1	14	93	0	51	40	23	6	30	1.80
45913244--45913278	16	2.1	17	89	5	54	40	0	2	57	1.14
45913240--45913278	16	2.4	16	83	8	53	41	0	2	56	1.13
45916599--45916659	32	1.9	32	83	12	81	42	3	1	52	1.27
45922818--45922860	18	2.4	18	92	0	68	46	4	0	48	1.22
45924084--45924144	32	1.9	32	100	0	122	50	19	3	26	1.63
45924084--45924157	32	2.5	30	87	10	100	51	20	2	25	1.60
45927618--45927670	17	3.4	17	70	20	60	54	20	9	15	1.68
45927613--45927671	30	2.0	30	93	0	100	54	20	10	15	1.70
45933414--45933490	31	2.4	32	84	2	93	37	14	10	37	1.80
45934356--45934393	2	19.5	2	94	5	69	52	0	47	0	1.00
45954730--45954829	31	3.3	31	75	10	82	19	16	23	42	1.89
45954733--45954811	30	2.6	31	76	8	81	18	17	25	37	1.93
45960318--45960363	22	2.0	23	88	12	69	36	0	0	63	0.95
45964018--45964122	34	3.1	34	78	6	115	28	12	17	41	1.85
45969110--45969156	23	2.0	23	95	0	85	38	6	10	44	1.65
45973417--45973444	14	2.0	14	100	0	56	28	35	21	14	1.92
45974790--45974855	34	1.9	34	87	0	96	51	4	12	31	1.59
45977629--45977708	41	2.0	40	87	2	115	50	15	8	26	1.72
45979985--45980021	15	2.5	15	100	0	74	40	8	18	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45990539--45990606	22	3.1	22	76	0	73	60	11	11	16	1.59
45993968--45993998	4	7.8	4	92	0	53	25	0	70	3	1.02
45995057--45995090	7	4.9	7	85	0	50	20	0	0	79	0.73
45995619--45995664	15	3.4	14	85	8	51	60	4	0	34	1.16
45997249--45997307	10	5.6	10	78	9	55	42	3	6	47	1.46
45997630--45997664	16	2.1	17	89	5	54	74	2	0	22	0.95
45997662--45997777	30	3.9	29	81	7	117	31	21	3	43	1.69
45998026--45998068	19	2.3	19	88	11	63	69	0	30	0	0.88
45998128--45998173	3	15.0	3	82	13	58	63	0	36	0	0.95
45998131--45998159	10	2.9	10	100	0	58	62	0	37	0	0.96
45998128--45998173	13	3.7	13	81	18	62	63	0	36	0	0.95
45998128--45998186	25	2.3	24	85	8	73	67	0	32	0	0.91
45998296--45998326	16	1.9	16	93	0	53	77	12	6	3	1.08
45998464--45998505	15	2.9	15	86	13	61	83	0	16	0	0.65
45998468--45998521	11	4.6	11	80	15	56	85	0	14	0	0.61
45998467--45998521	13	4.4	13	76	19	55	85	0	14	0	0.60
45998466--45998521	18	3.2	17	85	7	76	85	0	14	0	0.59
45998466--45998511	7	6.7	7	83	11	60	86	0	13	0	0.56
45998464--45998521	25	2.3	25	88	8	82	84	0	15	0	0.62
45998466--45998512	14	3.4	14	84	0	67	87	0	12	0	0.55
45999063--45999119	20	3.0	19	77	7	62	35	10	14	40	1.80
45999063--45999119	18	3.1	18	75	9	60	35	10	14	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45999063--45999137	38	2.0	38	84	5	98	34	12	12	41	1.79
45999182--45999259	17	4.6	18	72	22	69	33	12	7	46	1.71
45999176--45999258	34	2.4	34	88	6	114	30	14	9	45	1.77
45999187--45999240	16	3.2	16	75	14	56	35	14	9	40	1.78
45999237--45999319	20	4.2	19	75	18	71	39	7	8	44	1.62
45999097--45999512	18	23.4	17	67	20	94	34	11	9	44	1.73
45999290--45999334	17	2.7	17	89	3	56	33	8	11	46	1.70
46007671--46007950	121	2.3	123	83	9	360	28	14	21	35	1.93
46007830--46009430	72	22.1	72	93	2	2664	30	17	18	33	1.94
46007838--46010867	145	20.5	145	86	6	3787	30	17	17	33	1.94
46009353--46009517	87	1.9	87	83	7	219	26	20	18	34	1.96
46009513--46009545	14	2.4	14	95	5	59	12	9	9	69	1.36
46009560--46009752	53	3.7	54	89	5	290	31	15	17	35	1.91
46009705--46010870	289	4.0	291	96	1	2132	30	17	18	33	1.94
46010951--46010983	14	2.4	14	95	5	59	12	9	9	69	1.36
46010782--46010973	86	2.2	87	76	11	205	23	18	17	40	1.91
46010996--46011189	53	3.7	54	89	6	310	30	15	18	35	1.92
46011464--46011579	30	3.9	29	81	7	117	31	21	3	43	1.69
46011825--46011874	10	5.2	10	80	7	59	70	0	30	0	0.88
46011828--46011870	19	2.3	19	88	11	63	69	0	30	0	0.88
46011930--46011975	3	15.0	3	82	13	58	63	0	36	0	0.95
46011933--46011961	10	2.9	10	100	0	58	62	0	37	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46011930--46011975	13	3.7	13	81	18	62	63	0	36	0	0.95
46011930--46011988	25	2.3	24	85	8	73	67	0	32	0	0.91
46012070--46012136	17	4.0	16	74	11	53	80	11	5	1	0.95
46012111--46012136	12	2.2	12	100	0	52	84	7	7	0	0.77
46012271--46012351	15	5.4	15	88	10	89	82	0	17	0	0.66
46012276--46012354	22	3.4	22	80	15	88	81	0	18	0	0.70
46012276--46012353	8	10.0	8	83	9	90	82	0	17	0	0.68
46012894--46012950	20	3.0	19	77	7	62	35	10	14	40	1.80
46012894--46012950	18	3.1	18	75	9	60	35	10	14	40	1.80
46012894--46012968	38	2.0	38	84	5	98	34	12	12	41	1.79
46013013--46013090	17	4.6	18	72	22	69	33	12	7	46	1.71
46013007--46013089	34	2.4	34	88	6	114	30	14	9	45	1.77
46013018--46013071	16	3.2	16	75	14	56	35	14	9	40	1.78
46013068--46013150	20	4.2	19	75	18	71	39	7	8	44	1.62
46012928--46013341	18	23.4	17	67	19	108	34	11	9	44	1.73
46013121--46013165	17	2.7	17	89	3	56	33	8	11	46	1.70
46014462--46014512	20	2.6	19	71	17	50	47	1	0	50	1.12
46015229--46015275	24	2.0	24	86	0	67	59	0	2	38	1.09
46015222--46015285	33	1.9	33	81	12	78	59	0	1	39	1.07
46016541--46016649	32	3.6	31	74	17	102	42	2	9	45	1.50
46016549--46016678	59	2.2	60	87	1	181	43	3	10	43	1.53
46016570--46016694	59	2.1	59	83	2	153	43	3	9	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46023563--46023607	23	2.0	23	86	0	63	35	0	0	64	0.94
46023594--46023654	26	2.2	29	80	11	67	31	0	3	65	1.09
46023567--46023654	28	3.1	28	76	12	81	31	0	2	65	1.05
46026515--46026548	17	1.9	18	88	5	52	44	2	0	52	1.16
46056066--46056334	92	2.9	95	77	8	257	33	18	18	29	1.95
46056272--46056514	44	5.5	44	82	1	193	31	20	22	25	1.98
46056890--46056931	22	1.9	22	90	9	68	45	35	4	14	1.66
46058227--46058251	3	8.3	3	100	0	50	32	0	0	68	0.90
46064949--46064983	17	2.1	17	94	0	61	54	2	5	37	1.39
46065418--46065499	3	27.3	3	85	4	112	63	2	3	30	1.24
46067569--46068246	88	7.7	88	93	1	990	25	22	21	29	1.99
46072988--46073041	19	2.8	20	77	11	58	42	12	18	25	1.86
46075082--46075116	17	2.1	17	94	0	61	54	2	5	37	1.39
46075345--46075424	36	2.2	36	80	8	92	52	2	8	36	1.46
46075555--46075627	3	24.3	3	83	5	94	63	2	4	30	1.27
46086767--46086807	19	2.2	19	86	4	57	56	4	7	31	1.48
46088122--46088151	13	2.3	13	100	0	60	30	16	40	13	1.87
46090570--46090634	27	2.3	30	89	7	100	43	1	0	55	1.09
46090568--46090635	30	2.4	27	72	13	64	44	1	0	54	1.09
46090675--46090740	27	2.4	27	82	0	87	31	28	24	15	1.95
46095582--46095637	27	2.1	27	93	0	94	8	32	14	44	1.76
46095810--46095839	15	1.9	16	93	6	53	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46096374--46096560	36	5.0	37	75	20	144	0	32	0	67	0.91
46096424--46096562	10	14.6	10	69	22	63	0	33	0	66	0.92
46096393--46096560	38	4.2	42	79	12	178	0	32	0	67	0.91
46096401--46096501	47	2.1	49	80	15	131	0	29	0	70	0.88
46096368--46096534	79	2.2	76	88	10	243	0	31	0	68	0.89
46096515--46096570	27	2.1	27	90	6	87	0	37	0	62	0.95
46096524--46096578	26	2.1	26	83	6	67	1	36	1	60	1.18
46096599--46096668	26	2.5	30	88	11	105	45	0	8	45	1.34
46097012--46097050	21	1.9	20	89	5	60	41	0	5	53	1.23
46097126--46097191	33	2.0	33	85	5	89	48	1	7	42	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170