genome.fa.s16.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  135  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40925278--40925322	2	22.5	2	100	0	90	51	0	48	0	1.00
40935022--40935090	18	3.8	18	86	0	93	40	27	4	27	1.75
40936213--40937183	44	22.3	44	76	9	589	27	22	20	29	1.98
40935962--40937005	517	2.0	517	92	0	1732	27	22	19	29	1.98
40938111--40938166	28	2.0	28	92	0	94	28	16	26	28	1.97
40939383--40939438	22	2.5	23	77	11	62	14	12	0	73	1.11
40939401--40939476	13	5.7	13	72	24	52	11	7	2	77	1.08
40943996--40944045	3	16.7	3	83	8	66	66	2	2	30	1.14
40943986--40944045	27	2.2	28	88	8	88	65	3	1	30	1.19
40944382--40944460	33	2.4	33	97	0	149	29	18	24	27	1.98
40947809--40947860	24	2.2	24	85	0	68	44	3	19	32	1.69
40950111--40950144	17	2.0	17	94	0	59	41	11	14	32	1.82
40962954--40963016	20	3.2	19	80	10	72	65	0	3	31	1.09
40962938--40962999	31	2.0	30	84	9	81	62	0	6	30	1.20
40969448--40969508	17	3.4	17	73	8	50	68	1	1	27	1.08
40969452--40969500	26	1.9	26	84	12	66	67	2	2	28	1.13
40979266--40979329	33	1.9	33	84	6	85	26	20	25	28	1.99
40983331--40983579	43	5.8	43	89	2	369	26	30	18	23	1.98
40983331--40983581	85	2.9	86	88	3	382	26	30	18	23	1.98
40983331--40983587	128	2.0	128	88	3	385	27	30	18	23	1.97
40987982--40988014	12	2.8	12	90	4	50	6	18	33	42	1.75
40992047--40992085	20	2.0	20	94	0	69	53	2	0	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40994359--40994413	28	2.0	28	89	6	87	30	1	3	63	1.22
41006584--41007647	44	24.6	43	71	14	525	30	20	22	27	1.98
41006584--41006739	84	1.8	85	81	9	194	29	21	22	26	1.99
41006577--41007439	217	4.0	217	92	0	1451	30	20	22	27	1.98
41007235--41007569	173	1.9	172	93	0	580	29	19	23	27	1.98
41006880--41007611	89	8.4	88	69	14	350	30	19	22	27	1.98
41009140--41009179	19	2.1	19	95	0	71	35	2	5	57	1.34
41009144--41009194	19	2.5	19	84	12	57	35	3	3	56	1.36
41009197--41009253	29	2.0	27	90	6	87	29	1	3	64	1.20
41009605--41009639	15	2.3	15	95	0	61	22	0	11	65	1.24
41010818--41011042	98	2.3	98	83	1	299	29	27	14	28	1.95
41010818--41011069	98	2.6	98	81	3	267	29	27	13	30	1.94
41021843--41021889	21	2.2	21	84	3	58	68	0	2	29	1.02
41021828--41021889	22	2.9	21	78	4	70	62	0	1	35	1.05
41023929--41023967	16	2.4	16	91	0	60	35	10	25	28	1.89
41024125--41024149	12	2.1	12	100	0	50	44	0	0	56	0.99
41030932--41030966	11	3.0	11	84	15	52	8	25	2	62	1.38
41034974--41035148	35	5.0	35	88	4	248	17	22	18	41	1.91
41036726--41036770	20	2.1	23	88	12	69	66	8	11	13	1.44
41039571--41039781	35	6.1	35	89	2	311	41	18	22	18	1.91
41041268--41041292	13	1.9	13	100	0	50	60	0	0	40	0.97
41052807--41052864	24	2.4	24	97	0	107	34	12	24	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41053120--41053319	46	4.1	49	79	9	214	29	17	23	31	1.96
41053150--41053559	46	9.0	46	73	12	324	28	17	24	30	1.97
41053119--41053319	97	2.1	98	89	1	307	29	16	22	30	1.96
41053418--41053577	51	3.2	51	80	10	197	27	16	26	28	1.97
41060895--41060927	15	2.2	15	89	10	50	12	12	3	72	1.23
41067169--41067245	14	5.0	15	72	20	61	41	15	9	33	1.79
41067185--41067224	20	2.0	20	90	0	62	50	12	10	27	1.72
41072122--41072223	45	2.3	44	83	6	125	41	16	18	23	1.90
41072426--41072512	40	2.2	40	83	4	104	41	19	6	32	1.78
41073142--41073202	24	2.5	23	80	15	61	49	4	0	45	1.23
41073150--41073218	35	2.0	35	85	5	95	47	5	0	46	1.26
41078801--41078880	35	2.3	35	83	8	94	50	6	0	43	1.27
41080860--41080893	17	2.0	17	88	11	52	23	2	2	70	1.15
41082045--41082078	6	5.7	6	92	0	50	64	0	20	14	1.28
41082224--41082300	27	2.9	26	79	7	84	44	6	16	32	1.74
41087787--41087835	24	2.0	24	100	0	98	51	12	24	12	1.73
41088982--41089076	47	2.0	47	91	0	154	45	7	13	33	1.72
41094559--41094645	17	4.8	17	67	18	59	66	2	21	9	1.31
41094529--41094643	56	2.1	56	100	0	230	65	3	19	12	1.40
41099628--41099709	41	2.0	41	100	0	164	36	21	17	24	1.94
41103449--41103482	17	1.9	17	88	5	50	67	0	2	29	1.05
41109989--41110022	17	1.9	18	88	5	52	67	5	2	23	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41110199--41110261	3	21.7	3	72	18	53	65	3	3	28	1.24
41110187--41110229	18	2.4	18	88	0	59	62	2	9	25	1.37
41111883--41111940	30	1.9	30	89	0	89	41	3	24	31	1.71
41112152--41112183	13	2.5	13	94	0	55	31	0	12	56	1.37
41112278--41112519	50	4.7	50	86	4	297	26	24	29	19	1.99
41112278--41112527	100	2.4	103	88	6	364	26	24	29	20	1.99
41119473--41119530	30	1.9	30	89	0	89	41	3	24	31	1.71
41119742--41119773	13	2.5	13	94	0	55	31	0	12	56	1.37
41119868--41120109	50	4.7	50	86	4	297	26	24	29	19	1.99
41119868--41120117	100	2.4	103	88	6	364	26	24	29	20	1.99
41134814--41134854	19	2.2	19	86	0	55	31	4	2	60	1.30
41144398--41144843	227	2.0	227	92	0	741	33	14	20	31	1.92
41149661--41149741	25	3.2	24	78	13	83	22	28	16	33	1.95
41156493--41156536	21	2.1	21	100	0	88	18	13	27	40	1.88
41158650--41158678	14	2.1	14	100	0	58	13	6	24	55	1.63
41159834--41159882	22	2.1	23	85	7	64	26	4	2	67	1.19
41160240--41160303	30	2.1	30	82	5	76	39	4	12	43	1.63
41163307--41163382	32	2.4	32	82	8	95	34	2	7	55	1.43
41163912--41163960	21	2.4	20	80	12	55	40	2	2	55	1.23
41164009--41164049	19	2.1	19	86	4	55	63	0	2	34	1.08
41164301--41164345	20	2.2	20	92	0	72	60	0	2	37	1.09
41164821--41164860	15	2.8	14	85	14	55	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41170369--41170416	17	2.7	18	80	9	62	58	2	6	33	1.35
41170404--41170437	9	3.7	9	88	4	50	61	0	0	38	0.96
41170510--41170558	21	2.4	21	86	3	64	73	6	2	18	1.14
41170885--41170954	19	3.7	19	67	16	56	25	5	1	67	1.21
41170880--41170990	27	4.0	27	74	14	77	25	3	4	66	1.27
41177697--41177737	16	2.6	16	88	7	57	24	0	2	73	0.96
41186031--41186146	45	2.6	45	77	2	108	25	24	12	38	1.89
41189222--41189380	85	1.9	84	86	1	228	33	11	9	44	1.74
41194292--41194328	14	2.6	14	88	12	58	29	0	0	70	0.88
41194296--41194333	15	2.5	15	84	12	51	28	0	0	71	0.87
41198119--41198328	104	2.0	104	100	0	420	24	21	21	32	1.98
41203495--41203554	2	30.0	2	100	0	120	50	0	50	0	1.00
41204449--41204489	20	2.0	21	85	9	57	34	0	4	60	1.18
41205042--41205067	3	8.7	3	100	0	52	30	0	0	69	0.89
41210899--41211142	90	2.7	90	83	0	317	26	25	15	33	1.95
41211976--41212023	21	2.3	21	85	7	62	18	16	35	29	1.93
41214180--41214219	14	2.8	14	88	3	62	60	0	0	40	0.97
41215880--41215913	18	1.9	18	88	5	52	50	5	11	32	1.63
41216625--41216669	18	2.7	18	83	16	62	44	2	0	53	1.13
41217767--41217798	17	1.9	16	93	6	55	50	18	12	18	1.78
41218268--41218320	13	4.1	13	85	0	79	43	24	0	32	1.55
41221928--41222299	46	8.6	45	82	12	460	34	13	22	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41222012--41222167	36	4.1	36	76	15	168	37	12	19	30	1.89
41221966--41222299	82	4.0	81	86	7	447	34	14	21	29	1.93
41221928--41222299	128	2.9	126	78	16	431	34	13	22	29	1.93
41225201--41225239	19	2.0	20	85	5	53	35	12	20	30	1.90
41238913--41238988	37	2.1	37	82	9	93	50	2	2	44	1.30
41240602--41240632	16	1.9	16	93	0	53	74	9	6	9	1.23
41241803--41241878	24	3.2	24	81	1	82	55	10	3	30	1.52
41244929--41245020	22	4.2	22	86	5	105	30	28	0	41	1.56
41244929--41245020	44	2.1	44	84	8	116	30	28	0	41	1.56
41244994--41245050	30	1.9	30	92	0	96	35	31	0	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170