genome.fa.s16.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  77  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23468699--23469216	250	2.1	250	90	0	822	30	17	21	30	1.96
23472376--23472435	14	4.1	15	77	10	61	23	0	28	48	1.51
23472383--23472435	15	3.6	15	78	12	56	22	0	26	50	1.49
23472404--23472695	22	13.7	22	77	9	241	18	0	30	50	1.52
23472376--23472436	29	2.1	29	84	0	77	24	0	27	47	1.52
23472383--23472522	66	2.1	66	84	5	176	20	0	27	52	1.47
23472416--23472695	44	6.6	44	79	13	293	17	0	31	50	1.52
23472717--23472755	7	5.6	7	100	0	78	56	0	0	43	0.99
23472964--23473010	21	2.2	21	85	7	60	6	21	36	36	1.79
23475183--23475249	11	6.0	11	83	10	82	43	0	31	25	1.55
23475182--23475256	22	3.3	23	78	10	84	40	0	33	26	1.57
23475182--23475248	33	2.0	34	88	8	102	41	0	32	25	1.56
23475182--23475256	11	6.6	12	73	22	72	40	0	33	26	1.57
23478862--23478892	13	2.4	13	100	0	62	6	35	6	51	1.53
23480989--23481027	20	2.0	20	85	10	53	58	2	0	38	1.12
23484693--23484744	26	2.1	24	85	7	68	44	1	1	51	1.23
23484823--23484857	18	2.0	17	88	5	52	45	0	0	54	0.99
23484823--23484877	16	3.4	16	80	16	53	49	0	1	49	1.11
23484979--23485013	18	2.0	17	88	5	52	45	0	0	54	0.99
23484811--23485126	156	2.0	157	96	0	580	48	5	3	42	1.41
23485178--23485263	44	1.9	45	85	2	120	34	29	6	29	1.83
23487887--23487911	10	2.5	10	100	0	50	20	8	28	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23491013--23491116	49	2.1	49	85	0	136	30	9	8	50	1.65
23492513--23492576	26	2.4	28	86	5	87	40	0	0	59	0.97
23492632--23492665	17	2.0	17	100	0	68	41	0	0	58	0.98
23492632--23492679	15	3.0	15	81	9	51	41	2	0	56	1.11
23492814--23492917	44	2.5	41	77	17	113	36	28	3	30	1.75
23492829--23492919	46	2.0	46	89	4	141	38	28	4	28	1.76
23492899--23492935	16	2.3	16	90	0	56	21	29	5	43	1.75
23494098--23494136	18	2.2	17	86	4	51	28	2	5	64	1.28
23494951--23494979	3	9.7	3	100	0	58	31	0	0	68	0.89
23495378--23495427	22	2.3	22	96	0	91	28	34	0	38	1.57
23495399--23495457	30	2.0	30	96	0	109	28	35	0	35	1.58
23495514--23495578	30	2.2	30	97	0	121	32	0	0	67	0.91
23496660--23496698	7	5.6	7	96	0	60	23	0	12	64	1.28
23496660--23496704	7	6.4	7	94	0	54	24	0	13	62	1.31
23497905--23498321	29	13.9	29	86	6	573	44	26	0	27	1.58
23498009--23498036	6	4.7	6	100	0	56	35	50	0	14	1.43
23497980--23498065	41	2.1	41	100	0	172	41	34	0	23	1.55
23497905--23498321	58	6.9	58	91	7	645	44	26	0	27	1.58
23497905--23498321	87	4.6	87	89	7	636	44	26	0	27	1.58
23501515--23501780	124	2.1	124	97	0	496	33	20	15	31	1.93
23502826--23502865	16	2.5	16	87	0	62	42	7	22	27	1.80
23503042--23503165	58	2.1	58	89	2	187	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23506667--23511088	23	194.7	23	68	8	1158	40	24	4	30	1.76
23506661--23509289	182	14.5	182	89	0	3939	40	24	4	29	1.76
23506661--23511100	364	12.4	364	86	4	6071	40	24	4	30	1.76
23509139--23509443	154	2.0	148	86	5	423	40	23	4	30	1.76
23509287--23509865	182	3.2	180	88	1	820	40	24	5	29	1.78
23510202--23511100	182	4.9	181	88	1	1305	40	24	4	30	1.75
23513440--23513536	40	2.4	40	84	5	115	39	25	21	13	1.90
23513734--23513833	41	2.4	41	86	0	137	21	21	23	35	1.96
23513660--23513958	156	1.9	153	81	6	352	24	21	22	31	1.98
23514866--23514962	7	13.9	7	69	4	52	8	1	43	47	1.40
23514870--23514960	21	4.3	20	70	13	76	8	1	42	47	1.41
23515994--23516037	19	2.2	20	84	4	54	25	45	2	27	1.65
23518510--23518639	56	2.3	56	91	1	206	48	8	3	39	1.52
23518580--23518717	37	3.7	37	96	0	240	49	9	5	35	1.59
23518662--23518883	57	3.9	57	89	2	340	47	9	4	38	1.56
23518806--23518840	9	3.9	9	88	0	52	48	14	0	37	1.44
23518804--23518840	18	2.1	18	94	0	65	51	13	0	35	1.41
23518822--23518923	37	2.8	37	88	5	161	48	9	5	36	1.61
23518925--23519011	37	2.4	37	90	3	133	47	10	3	39	1.55
23518776--23519165	185	2.1	186	98	0	755	47	9	5	38	1.58
23518991--23519025	9	3.9	9	88	0	52	48	14	0	37	1.44
23518989--23519025	18	2.1	18	94	0	65	51	13	0	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23518952--23519057	55	1.9	55	94	0	185	49	10	3	36	1.55
23519007--23519108	37	2.8	37	90	0	168	48	8	6	36	1.61
23518776--23519165	92	4.2	94	87	3	576	47	9	5	38	1.58
23519061--23519217	57	2.8	57	94	0	262	47	7	5	39	1.54
23519197--23519387	9	21.9	9	74	8	171	45	19	2	32	1.62
23519198--23519423	34	6.8	34	72	13	145	46	19	1	32	1.60
23519193--23519390	86	2.3	85	79	7	213	45	20	2	32	1.62
23525269--23525293	12	2.1	12	100	0	50	16	20	16	48	1.82
23525281--23525422	42	3.4	42	94	1	232	32	21	21	23	1.98
23525281--23525510	84	2.8	83	80	4	221	28	20	21	29	1.98
23525394--23525510	40	2.8	42	87	7	177	23	21	21	33	1.97
23525949--23525973	7	3.6	7	100	0	50	28	0	16	56	1.41
23526416--23527876	46	32.1	46	71	5	705	39	24	4	31	1.75
23526416--23527876	23	64.3	23	70	9	512	39	24	4	31	1.75
23526384--23527739	182	7.5	182	90	0	2063	40	24	4	30	1.75
23526384--23527739	362	3.7	363	92	0	2115	40	24	4	30	1.75
23526384--23527725	544	2.5	543	90	1	2087	40	24	4	30	1.75
23527496--23527934	229	1.9	230	83	1	576	40	23	4	32	1.73
23537619--23537663	20	2.2	20	88	0	63	46	17	26	8	1.78
23544665--23544703	14	2.7	14	84	4	51	58	2	2	35	1.25
23546133--23546166	12	2.7	13	86	4	52	0	0	14	85	0.60
23546423--23546729	50	6.1	50	72	1	229	23	17	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23546447--23546758	100	3.1	100	91	0	489	24	18	22	34	1.96
23546753--23547324	217	2.6	217	92	0	957	29	20	18	32	1.96
23547130--23547388	85	3.0	88	70	16	257	28	20	18	32	1.96
23547207--23547323	44	2.8	42	81	3	137	29	20	17	31	1.96
23547330--23547765	129	3.4	129	89	3	646	25	22	18	33	1.97
23548992--23549050	8	7.6	8	78	16	54	13	13	0	72	1.11
23548983--23549034	15	3.7	15	87	10	74	15	15	0	69	1.20
23548983--23549034	7	7.4	7	83	16	72	15	15	0	69	1.20
23549904--23549964	6	9.7	6	81	10	50	13	3	6	77	1.09
23549916--23549974	12	4.3	14	81	14	52	15	1	10	72	1.18
23549910--23549952	13	3.2	13	86	3	50	11	4	4	79	1.04
23549937--23549968	6	5.3	6	100	0	64	15	0	15	68	1.21
23549934--23549976	18	2.4	17	75	24	52	16	0	13	69	1.19
23554752--23554803	27	1.9	27	84	0	68	65	1	25	7	1.30
23557892--23557930	14	2.7	14	84	4	51	58	2	2	35	1.25
23559544--23559581	8	5.0	8	87	6	53	2	0	18	78	0.86
23563490--23563528	20	1.9	20	89	5	60	48	0	2	48	1.15
23563796--23563854	9	6.4	9	80	7	66	23	40	1	33	1.65
23564039--23564073	18	2.0	17	94	5	61	31	0	0	68	0.90
23568373--23568539	81	2.1	81	89	0	253	34	19	17	27	1.95
23573863--23573897	9	4.1	8	89	10	52	0	17	0	82	0.66
23574679--23574709	6	5.2	6	92	0	53	83	12	0	3	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23580266--23580296	16	1.9	16	93	0	53	29	22	6	41	1.78
23585957--23586000	23	1.9	23	95	0	79	54	25	0	20	1.45
23592520--23592544	10	2.5	10	100	0	50	72	0	0	28	0.86
23597036--23597229	51	3.8	51	75	10	175	25	15	26	32	1.95
23597235--23597319	46	1.9	43	85	7	116	23	16	27	32	1.96
23597434--23597506	37	1.9	38	83	2	94	46	4	19	30	1.68
23599152--23599218	25	2.7	25	73	15	66	49	7	10	32	1.65
23604999--23605043	23	1.9	24	86	4	65	35	2	11	51	1.50
23605459--23605496	19	2.0	19	85	10	51	21	42	0	36	1.53
23615753--23615797	23	1.9	24	86	4	65	35	2	11	51	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170