genome.fa.s16.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  41  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11619601--11619631	13	2.3	13	94	5	53	74	0	12	12	1.08
11620846--11621801	128	7.5	128	87	3	1264	32	18	22	25	1.97
11622131--11622257	44	2.9	43	82	6	148	33	18	21	27	1.96
11621957--11622610	219	3.0	218	89	2	981	33	18	19	29	1.96
11622967--11623006	16	2.5	16	84	11	55	45	37	2	15	1.59
11627214--11627249	18	1.9	18	88	5	54	58	2	0	38	1.13
11627238--11627297	18	3.2	19	76	23	56	51	0	0	48	1.00
11639558--11639600	16	2.6	16	77	3	50	37	0	6	55	1.27
11640376--11640424	25	2.0	25	83	0	62	44	4	4	46	1.41
11641889--11641937	24	2.1	24	88	3	73	30	0	4	65	1.11
11646675--11646735	30	2.0	30	100	0	122	34	29	9	26	1.88
11662330--11662369	18	2.2	19	95	4	73	42	0	5	52	1.23
11683771--11683830	16	3.7	16	71	20	61	33	25	11	30	1.91
11689149--11689200	24	2.2	24	89	0	77	51	5	3	38	1.44
11691993--11692219	35	6.3	35	83	6	267	25	24	15	34	1.95
11692020--11692233	73	2.9	73	90	0	329	25	23	15	35	1.94
11699636--11699678	19	2.1	21	87	8	63	58	0	4	37	1.19
11699642--11699678	10	3.5	11	82	17	51	54	0	5	40	1.24
11699689--11699751	22	3.1	20	86	6	83	60	3	6	30	1.37
11699831--11699868	20	1.9	20	88	0	58	71	2	0	26	1.00
11710328--11710368	19	2.1	20	90	4	66	80	4	14	0	0.87
11710329--11710372	11	4.3	10	85	11	54	79	4	15	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11710328--11710383	20	2.9	19	80	20	64	75	7	17	0	1.03
11711130--11711311	101	1.8	101	83	0	247	25	18	21	34	1.96
11711347--11711596	44	5.5	44	66	18	111	30	21	16	32	1.95
11711381--11711703	142	2.3	142	95	0	574	28	21	17	32	1.96
11711567--11711659	44	2.1	44	87	0	132	27	23	17	31	1.97
11711944--11712535	87	6.8	87	90	0	889	25	23	22	29	1.99
11711944--11712535	260	2.3	261	90	0	925	25	23	22	29	1.99
11713743--11713800	20	2.8	20	76	2	71	15	17	0	67	1.24
11713789--11713813	10	2.5	10	100	0	50	8	8	0	84	0.79
11713748--11713800	7	7.9	7	77	8	56	16	15	0	67	1.23
11714203--11714254	27	1.9	27	84	7	70	9	9	9	71	1.32
11714207--11714278	33	2.2	33	84	2	99	9	6	6	76	1.16
11720065--11720113	11	4.5	11	85	10	66	79	4	16	0	0.88
11720763--11720807	18	2.4	19	92	3	74	35	2	0	62	1.08
11728647--11728930	141	2.0	143	97	1	545	24	25	25	25	2.00
11729175--11729225	23	2.2	23	89	6	77	41	17	11	29	1.85
11754483--11754535	23	2.2	24	83	3	63	32	13	24	30	1.93
11762479--11762583	40	2.6	41	82	10	135	37	29	18	15	1.91
11765418--11765493	35	2.2	35	92	2	136	21	26	19	32	1.97
11772451--11772512	26	2.4	26	88	0	88	38	14	11	35	1.82
11773221--11773288	34	2.0	34	82	5	84	22	23	22	32	1.98
11780718--11780757	19	2.1	19	100	0	80	42	0	5	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11783270--11783315	23	2.0	23	86	0	65	30	8	13	47	1.72
11788391--11789364	485	2.0	485	98	0	1876	40	9	16	33	1.81
11797741--11797774	12	2.8	12	95	0	59	29	44	17	8	1.79
11813392--11813584	54	3.6	54	82	2	172	41	18	22	18	1.90
11813413--11813587	27	6.5	27	82	4	183	41	17	23	17	1.90
11813413--11813598	81	2.3	81	82	3	223	40	18	22	18	1.91
11813675--11813714	20	2.0	21	85	14	57	32	10	12	45	1.75
11813749--11813824	26	2.9	26	80	3	73	17	23	22	36	1.94
11815258--11815300	20	2.1	21	87	12	63	81	0	18	0	0.69
11815280--11815350	34	2.1	34	84	2	90	56	9	18	15	1.66
11817446--11817479	18	2.0	17	88	11	52	26	5	2	64	1.30
11818299--11818654	188	1.9	188	81	3	439	36	18	14	30	1.91
11825575--11825768	51	3.8	50	76	11	155	32	25	15	26	1.95
11832908--11832940	8	4.0	8	96	4	57	36	0	24	39	1.56
11839156--11839198	9	4.7	9	77	5	50	34	2	41	20	1.65
11840882--11840906	7	3.6	7	100	0	50	12	44	0	44	1.41
11843893--11843970	41	1.9	39	87	5	111	16	1	34	47	1.55
11843879--11843962	20	4.2	20	69	14	57	15	1	35	47	1.53
11843911--11843972	7	9.0	7	85	3	63	19	0	33	46	1.50
11843916--11843996	34	2.3	35	79	8	85	18	1	35	44	1.58
11843909--11843990	41	2.0	41	83	4	103	19	1	34	45	1.58
11843893--11844015	48	2.6	48	78	10	121	17	4	34	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11847637--11847667	14	2.2	14	94	0	53	38	9	6	45	1.63
11848316--11848345	12	2.5	12	100	0	60	16	43	33	6	1.74
11848466--11848560	33	2.9	33	80	3	120	20	42	14	23	1.89
11848868--11848896	14	2.1	14	100	0	58	41	0	6	51	1.28
11848839--11849068	62	3.7	62	95	0	424	47	9	6	36	1.62
11852086--11852720	216	3.0	210	89	4	972	38	15	11	34	1.84
11856586--11856646	30	2.0	30	100	0	122	22	6	19	50	1.70
11857010--11857066	22	2.5	23	80	2	62	66	5	12	15	1.41
11865188--11865311	60	2.1	60	89	3	187	22	16	12	49	1.78
11865516--11865567	18	2.7	19	85	8	61	15	3	1	78	0.98
11867649--11867848	78	2.6	75	74	12	183	37	4	16	42	1.68
11867668--11867811	78	1.8	78	82	8	186	40	4	13	42	1.63
11868240--11868460	41	5.4	41	91	0	352	27	20	28	23	1.99
11875679--11875878	78	2.6	76	76	10	194	37	4	16	42	1.69
11876273--11876496	41	5.5	41	83	4	274	29	19	25	25	1.98
11876273--11876504	82	2.8	82	85	2	331	30	18	25	25	1.98
11876674--11876747	34	2.1	35	82	5	87	29	10	21	37	1.88
11882963--11883016	27	2.0	27	85	0	72	46	11	9	33	1.71
11889700--11889731	12	2.7	12	100	0	64	6	18	6	68	1.32
11905394--11905437	21	2.1	21	95	0	79	47	29	6	15	1.72
11908528--11908561	16	2.1	16	88	0	50	82	0	8	8	0.85
11911727--11911765	20	2.0	20	89	0	60	35	7	5	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11928284--11928322	16	2.5	15	84	12	51	41	0	0	58	0.98
11928346--11928487	46	3.1	46	70	19	134	43	4	2	49	1.36
11928287--11928534	90	2.7	90	93	1	415	45	3	2	48	1.34
11928550--11928966	120	3.5	119	91	1	647	41	2	5	50	1.38
11928671--11928705	18	2.0	17	88	5	52	45	0	0	54	0.99
11928804--11928850	16	3.0	16	78	12	53	46	0	2	51	1.13
11928800--11928850	15	3.5	15	82	12	54	47	0	1	50	1.12
11929178--11929214	16	2.3	16	95	0	65	24	32	5	37	1.78
11933648--11933686	18	2.2	17	86	13	53	33	0	20	46	1.51
11933912--11934033	23	5.3	23	79	0	154	22	19	25	32	1.97
11933912--11934033	46	2.7	46	88	0	181	22	19	25	32	1.97
11936714--11936855	54	2.6	54	82	2	169	28	27	25	18	1.98
11959232--11959297	33	2.0	33	82	5	80	34	6	6	53	1.51
11965648--11965679	16	2.0	16	93	0	55	25	6	34	34	1.81
11966625--11966736	40	2.9	39	81	6	111	39	17	18	24	1.92
11966819--11966994	41	4.2	41	82	5	192	19	22	26	31	1.98
11966819--11966994	82	2.1	85	83	5	216	19	22	26	31	1.98
11967494--11967556	21	3.0	22	74	4	67	26	0	41	31	1.56
11971403--11971489	43	2.0	43	86	0	120	34	11	10	43	1.75
11971759--11972022	43	6.2	43	80	3	237	26	16	29	28	1.97
11971752--11972023	129	2.1	128	80	2	314	25	15	29	29	1.96
11971752--11972023	86	3.2	84	80	6	305	25	15	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11990883--11991031	27	5.5	27	70	7	79	33	16	28	21	1.95
11994397--11994440	22	2.0	23	86	4	63	11	18	2	68	1.30
11995131--11995156	9	2.9	9	100	0	52	53	0	11	34	1.37
11997520--11997727	27	7.7	27	82	8	237	30	14	25	29	1.95
11997573--11997640	26	2.6	26	90	0	100	32	13	20	33	1.91
11997861--11998081	81	2.7	81	85	3	277	43	12	22	21	1.86
11997869--11998085	27	8.1	27	73	5	170	44	12	22	20	1.85
12002997--12003040	18	2.4	18	88	7	63	52	0	0	47	1.00
12005950--12005984	18	2.0	17	88	5	52	34	0	0	65	0.93
12005950--12006015	28	2.4	27	85	12	89	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170