genome.fa.s16.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  35  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9653959--9654027	19	3.6	19	70	18	61	33	26	24	15	1.95
9659278--9659311	16	2.2	15	94	5	59	64	5	5	23	1.38
9663731--9664957	29	41.2	30	92	5	2018	51	0	10	37	1.39
9663731--9664957	59	20.6	59	92	5	2018	51	0	10	37	1.39
9665268--9665348	39	2.1	39	100	0	162	55	9	14	19	1.67
9668798--9668850	21	2.5	21	90	0	79	30	35	9	24	1.87
9669769--9669834	29	2.3	29	94	0	114	24	34	25	15	1.94
9669777--9669828	15	3.5	15	72	15	54	25	34	21	19	1.96
9685437--9685506	3	23.3	3	80	11	81	62	0	34	2	1.10
9685437--9685508	21	3.4	21	85	11	94	62	0	34	2	1.10
9691060--9691113	25	2.1	26	82	3	65	38	0	16	44	1.48
9691081--9691123	17	2.7	15	80	16	50	46	0	11	41	1.40
9694604--9694685	43	2.0	41	87	4	119	50	3	21	24	1.65
9700279--9700362	42	2.0	42	88	2	123	50	3	20	26	1.64
9710727--9710767	21	2.0	21	85	0	55	48	9	7	34	1.64
9710810--9710848	3	12.7	3	94	5	69	66	0	0	33	0.92
9710810--9710847	19	2.0	19	100	0	76	68	0	0	31	0.90
9711321--9711431	19	5.8	19	95	0	204	37	16	9	36	1.80
9712233--9712325	32	2.9	32	84	6	125	29	35	19	16	1.93
9717240--9717277	3	12.7	3	100	0	76	68	0	0	31	0.90
9717793--9717825	17	1.9	17	93	0	57	33	3	0	63	1.10
9717784--9717844	20	3.3	18	84	11	79	37	1	0	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9718132--9718180	19	2.7	18	83	3	62	20	4	0	75	0.96
9718994--9719205	106	2.0	106	93	0	361	40	16	21	21	1.91
9722822--9723015	97	2.0	95	94	5	336	46	11	19	21	1.82
9727409--9727798	195	2.0	194	86	4	536	44	14	14	26	1.84
9728958--9729063	34	3.0	34	84	6	115	32	17	24	25	1.97
9728964--9729069	36	2.9	37	86	6	130	33	18	25	22	1.97
9731565--9731614	18	2.6	19	77	22	52	46	0	2	52	1.12
9731630--9731670	13	3.0	14	82	10	50	53	2	2	41	1.27
9734506--9734559	16	3.4	16	92	0	90	37	3	33	25	1.74
9734541--9734634	44	2.1	44	80	9	111	31	5	27	35	1.79
9738260--9738312	18	2.9	18	82	0	70	24	20	15	39	1.91
9738289--9738339	25	2.0	25	84	0	66	21	13	21	43	1.87
9738688--9738749	20	3.1	20	81	4	72	11	25	19	43	1.84
9738989--9739158	43	3.9	43	84	7	193	20	14	22	42	1.88
9744673--9744707	19	1.9	18	88	11	54	45	5	11	37	1.64
9745101--9745147	22	2.1	22	92	0	76	36	17	19	27	1.93
9745111--9745205	23	4.2	22	84	6	102	34	14	21	29	1.93
9761693--9761718	7	3.7	7	100	0	52	42	11	0	46	1.40
9770098--9770138	9	4.6	9	90	0	64	31	2	7	58	1.38
9776489--9776534	20	2.3	20	92	0	74	26	28	26	19	1.99
9780589--9780622	16	2.1	16	94	0	59	11	11	14	61	1.56
9786021--9786112	29	3.2	29	76	3	96	32	2	0	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9786059--9786101	18	2.3	18	96	4	77	30	0	0	69	0.88
9786069--9786154	11	8.2	11	72	19	58	37	2	0	60	1.10
9791141--9791177	15	2.6	14	88	12	58	35	0	16	48	1.46
9791422--9791466	20	2.2	20	80	0	54	42	2	13	42	1.56
9793077--9793148	24	3.0	24	81	6	83	27	13	15	43	1.85
9793111--9793148	18	2.1	18	90	0	58	31	13	15	39	1.86
9793121--9793163	18	2.4	18	80	0	50	30	13	18	37	1.90
9797013--9797049	18	2.1	18	100	0	74	21	5	24	48	1.71
9799403--9799438	16	2.2	16	100	0	72	25	0	36	38	1.56
9799419--9799509	45	2.0	45	85	2	121	27	6	28	37	1.82
9799674--9799708	18	2.0	17	88	5	52	54	0	0	45	0.99
9799810--9799848	15	2.7	15	92	4	62	46	5	0	48	1.24
9799561--9799875	156	2.0	156	95	1	569	42	3	5	48	1.43
9803712--9803991	93	3.1	93	63	22	243	40	8	6	44	1.62
9803618--9803987	176	2.1	176	100	0	740	40	7	6	45	1.58
9807024--9807232	82	2.5	82	82	6	235	36	29	17	16	1.92
9807024--9807256	41	5.7	41	75	9	167	36	28	17	17	1.92
9808086--9808124	16	2.7	14	88	11	53	20	5	0	74	1.01
9812567--9812655	29	3.0	29	70	6	72	28	7	10	53	1.62
9814473--9814512	17	2.4	17	95	0	71	7	32	0	60	1.25
9823193--9823240	21	2.2	21	96	3	87	56	14	16	12	1.68
9823735--9823779	22	2.0	23	82	4	56	37	26	15	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9831405--9831437	15	2.1	16	88	5	50	42	3	3	51	1.32
9863844--9864394	47	11.6	46	90	3	762	32	8	30	29	1.87
9863846--9864394	96	5.8	96	93	2	889	32	8	30	29	1.87
9866590--9866983	39	10.1	40	88	4	554	25	21	27	25	1.99
9869528--9870172	47	13.6	47	93	2	1042	32	8	29	29	1.87
9869528--9870172	287	2.3	287	94	2	1138	32	8	29	29	1.87
9883891--9883919	13	2.1	14	93	6	51	75	6	6	10	1.17
9884584--9884708	59	2.1	59	96	1	232	27	18	20	34	1.95
9887326--9887534	41	5.1	41	82	0	274	37	16	28	16	1.91
9887719--9887756	17	2.2	17	86	9	51	42	23	0	34	1.55
9899932--9900000	32	2.2	32	89	2	104	23	7	28	40	1.81
9907765--9907840	38	2.0	38	100	0	152	21	13	31	34	1.91
9909043--9909393	138	2.6	136	90	2	535	44	5	7	42	1.56
9909582--9909820	41	5.8	40	83	6	259	24	17	25	32	1.97
9909582--9909819	82	2.9	82	84	1	307	24	17	25	32	1.97
9909582--9909813	123	1.9	123	85	5	326	24	17	25	32	1.97
9910694--9910719	8	3.2	8	100	0	52	11	11	11	65	1.48
9911969--9912008	21	2.0	21	90	5	64	57	5	0	37	1.21
9912992--9913022	16	1.9	16	100	0	62	35	12	12	38	1.82
9913997--9914034	18	2.1	19	85	5	51	65	0	0	34	0.93
9914097--9914323	43	5.3	43	80	3	215	23	18	26	30	1.98
9914048--9914325	43	6.5	42	75	7	206	23	17	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9914097--9914345	86	2.9	88	75	12	255	25	18	25	30	1.98
9914053--9914325	129	2.1	130	83	5	331	23	17	27	31	1.97
9914654--9914800	75	2.0	75	90	5	235	31	14	7	46	1.72
9915351--9915383	17	1.9	17	88	11	50	33	6	27	33	1.81
9918367--9918435	30	2.3	30	82	5	77	36	15	23	24	1.94
9918397--9918493	30	3.2	30	76	5	97	41	13	25	19	1.88
9932505--9932697	50	3.8	50	90	0	296	25	22	31	20	1.98
9942479--9942556	40	1.9	41	81	2	95	46	5	1	47	1.33
9942676--9942733	25	2.3	25	87	0	80	55	1	0	43	1.10
9942916--9942963	18	2.8	17	90	6	71	45	2	2	50	1.25
9947874--9947907	17	2.0	17	88	0	50	26	17	26	29	1.98
9957893--9957956	30	2.2	30	86	8	87	32	1	7	57	1.37
9960432--9960488	21	2.7	22	78	5	64	33	22	19	24	1.97
9960433--9960501	21	3.3	21	77	4	59	33	21	18	26	1.97
9963006--9963061	20	2.7	21	78	13	55	46	12	3	37	1.59
9963026--9963067	21	2.0	22	85	4	59	45	16	4	33	1.69
9969265--9969295	5	6.2	5	100	0	62	80	0	0	19	0.71
9969453--9969488	15	2.4	15	85	0	54	27	16	11	44	1.82
9980357--9980398	22	2.0	21	90	4	66	45	0	40	14	1.45
9981402--9981435	16	2.1	16	88	0	50	50	14	17	17	1.79
9984234--9984274	21	2.0	21	90	0	64	29	21	29	19	1.98
9986178--9986211	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9996880--9996925	18	2.6	18	85	0	56	36	10	23	28	1.89
10005703--10005740	12	2.9	13	84	11	51	10	2	0	86	0.66
10005703--10005741	11	3.5	11	83	13	53	12	2	0	84	0.72
10025227--10025276	17	2.9	17	90	0	82	14	26	40	20	1.90
10025335--10025365	11	2.8	11	95	0	53	3	19	22	54	1.58
10028704--10028759	6	9.2	6	94	2	85	16	21	0	62	1.32
10028826--10028864	19	2.1	19	90	0	60	41	17	17	23	1.91
10030763--10030848	43	2.0	43	90	0	136	54	0	20	24	1.45
10032149--10032257	49	2.2	49	86	1	157	44	5	24	24	1.75
10040383--10040429	22	2.1	22	81	14	53	21	23	4	51	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170