genome.fa.s16.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  126  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38466705--38466757	26	2.0	26	92	0	88	33	13	5	47	1.66
38471191--38471229	20	2.0	20	89	0	60	46	7	12	33	1.71
38472563--38472613	21	2.5	20	81	6	57	35	0	21	43	1.53
38473045--38473197	24	6.2	24	75	11	105	15	25	23	35	1.94
38473045--38473186	48	2.9	50	78	5	146	15	25	23	35	1.94
38475597--38475631	18	2.0	18	88	5	54	37	2	2	57	1.29
38478788--38478821	2	17.0	2	93	0	59	47	0	2	50	1.16
38480393--38480503	3	37.0	3	96	0	204	68	0	31	0	0.90
38480579--38480613	3	11.7	3	93	0	61	0	28	0	71	0.86
38486996--38487036	3	14.0	3	84	5	57	2	26	0	70	0.99
38487119--38487158	20	2.0	20	90	0	62	30	27	17	25	1.97
38487191--38487261	31	2.3	31	80	7	83	21	8	19	50	1.73
38488059--38488093	18	1.9	18	88	0	52	51	0	2	45	1.16
38489200--38489245	14	3.0	16	75	18	53	58	8	0	32	1.28
38489200--38489247	15	3.3	14	74	8	51	58	8	0	33	1.28
38496528--38496601	27	2.6	28	81	8	78	29	17	12	40	1.86
38496528--38496602	28	2.6	28	77	10	71	29	17	12	41	1.85
38500214--38500404	42	4.6	41	81	8	208	30	25	16	28	1.96
38503218--38503441	76	3.0	72	85	5	286	44	7	7	40	1.60
38503414--38503576	5	32.6	5	100	0	326	60	19	0	20	1.37
38504071--38504399	167	2.0	166	95	0	595	26	19	22	31	1.97
38507027--38507063	18	2.1	18	89	0	56	51	0	13	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38509704--38509775	36	2.0	36	83	2	92	29	26	11	33	1.91
38514794--38514863	36	2.0	35	88	2	104	31	21	11	35	1.89
38518181--38518248	33	2.1	33	100	0	136	33	26	5	33	1.81
38518482--38518536	27	2.0	27	86	6	76	27	32	7	32	1.84
38518485--38518542	27	2.1	27	81	6	64	27	32	6	32	1.83
38518556--38518623	27	2.5	27	90	4	102	14	35	14	35	1.87
38521369--38521527	50	3.1	49	79	12	155	42	11	13	32	1.80
38525177--38525242	22	2.9	23	68	20	66	21	21	13	43	1.86
38525071--38525251	46	4.0	46	84	2	204	24	23	11	40	1.88
38529891--38529919	14	2.0	15	93	6	51	55	6	3	34	1.44
38530431--38530659	112	2.0	112	96	0	422	42	24	15	17	1.87
38535654--38535773	45	2.7	46	82	3	172	25	23	10	40	1.86
38539396--38539455	27	2.2	27	84	0	75	15	31	23	30	1.95
38539407--38539481	27	2.8	27	85	0	87	14	32	22	30	1.94
38539566--38539735	46	3.7	45	81	3	189	25	20	10	43	1.83
38539567--38539735	91	1.8	92	84	1	232	26	20	10	43	1.83
38546528--38546924	109	3.7	109	91	2	629	34	19	15	30	1.93
38546528--38546924	219	1.8	218	90	2	645	34	19	15	30	1.93
38547041--38547079	18	2.2	17	90	4	60	74	7	5	12	1.20
38547415--38547452	3	12.7	3	100	0	76	65	0	0	34	0.93
38548876--38549399	50	10.5	50	74	10	392	23	21	24	31	1.98
38548926--38549362	150	2.9	150	81	6	510	22	20	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38548889--38549399	100	5.1	100	86	2	480	22	20	25	31	1.98
38548877--38549362	150	3.2	150	81	4	502	22	21	24	31	1.98
38561185--38561482	111	2.7	111	89	2	433	33	18	15	32	1.92
38561590--38561628	18	2.2	17	90	4	60	74	7	5	12	1.20
38561964--38561998	3	11.7	3	100	0	70	65	0	0	34	0.93
38564695--38564729	18	1.9	18	88	0	52	17	5	8	68	1.35
38572270--38572322	18	2.9	18	77	5	63	35	20	1	41	1.64
38578681--38578733	18	2.9	18	77	5	63	35	20	1	41	1.64
38579671--38579705	18	2.0	18	94	5	63	14	45	28	11	1.79
38586539--38586582	18	2.5	18	85	3	54	52	0	2	45	1.13
38591051--38591115	18	3.6	18	83	4	78	7	41	7	43	1.62
38591084--38591126	18	2.4	18	92	0	68	9	46	6	37	1.63
38596517--38596599	9	8.7	9	76	9	58	61	1	3	33	1.21
38596513--38596570	18	3.1	19	75	7	64	58	1	1	37	1.18
38596512--38596589	28	2.6	29	78	13	79	58	1	2	37	1.20
38597700--38597742	19	2.1	21	87	8	63	48	0	4	46	1.22
38612168--38612227	21	2.9	21	85	9	86	13	23	16	46	1.82
38615352--38615435	20	4.2	20	68	14	57	11	29	22	35	1.90
38634196--38634221	10	2.6	10	100	0	52	0	26	11	61	1.30
38640106--38640185	26	3.1	26	85	3	99	21	20	21	37	1.94
38648838--38648894	30	1.9	29	96	3	105	43	12	17	26	1.84
38649667--38649693	4	6.8	4	100	0	54	51	22	0	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38650903--38651225	109	3.0	109	89	1	479	32	16	16	34	1.92
38654537--38654567	16	1.9	16	93	0	53	22	6	3	67	1.28
38654693--38655009	109	2.9	109	90	0	485	31	16	17	34	1.93
38658175--38658208	2	17.0	2	100	0	68	50	0	0	50	1.00
38658355--38658385	16	1.9	16	93	0	53	22	6	3	67	1.28
38658511--38658827	109	2.9	109	92	2	532	30	17	18	33	1.94
38661063--38661147	25	3.4	25	77	6	75	35	20	27	17	1.95
38668121--38668326	71	2.9	71	79	2	225	31	29	20	18	1.97
38670518--38670565	10	4.8	10	97	0	78	60	6	0	33	1.22
38676164--38676504	102	3.4	101	88	2	481	28	14	26	30	1.95
38676164--38676500	51	6.7	50	83	5	392	28	14	26	30	1.95
38679696--38679742	25	2.0	23	84	16	60	61	2	27	8	1.36
38682205--38682231	13	2.1	13	100	0	54	40	22	0	37	1.54
38682873--38682936	31	2.1	31	87	0	92	28	1	23	46	1.61
38688258--38688320	31	2.0	31	96	0	117	34	15	23	25	1.95
38691619--38691658	20	2.0	20	85	9	55	27	15	15	42	1.86
38691620--38691667	20	2.4	20	82	6	53	29	14	14	41	1.85
38692816--38692859	22	2.0	22	83	12	56	54	13	0	31	1.39
38693123--38693155	17	2.0	17	88	5	50	39	0	0	60	0.97
38693093--38693152	25	2.5	24	78	10	68	40	0	1	58	1.08
38700258--38700285	6	4.7	6	100	0	56	17	0	0	82	0.68
38703181--38703230	21	2.5	20	84	12	59	58	0	4	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38707447--38708388	113	8.5	112	84	7	1133	39	12	14	33	1.84
38708383--38708629	114	2.2	116	84	7	339	36	14	11	37	1.82
38708663--38708687	10	2.5	10	100	0	50	0	8	0	92	0.40
38709061--38709488	213	2.0	214	96	0	795	26	16	24	32	1.96
38715731--38715762	2	16.0	2	93	0	55	3	50	0	46	1.17
38718883--38718929	20	2.3	20	85	0	58	55	8	8	27	1.59
38718895--38718935	20	2.1	20	86	4	57	51	9	12	26	1.70
38720208--38720269	24	2.6	24	86	0	79	14	38	4	41	1.67
38720215--38720276	24	2.6	24	86	0	79	14	38	4	41	1.67
38722922--38722975	22	2.5	22	93	0	99	18	24	27	29	1.98
38728657--38729133	126	3.8	126	92	0	798	27	16	22	33	1.95
38731247--38731486	116	2.1	116	95	0	426	42	10	8	38	1.69
38731509--38731579	21	3.4	21	86	7	101	28	0	30	40	1.57
38731559--38731983	29	15.1	29	77	13	399	28	0	26	44	1.54
38731637--38731983	58	6.0	58	81	6	441	27	0	26	45	1.54
38731629--38731994	87	4.2	88	83	9	455	27	0	27	45	1.54
38731876--38731937	20	3.1	20	80	11	65	25	0	27	46	1.53
38731884--38731944	20	3.0	21	83	9	81	26	0	27	45	1.54
38731804--38732014	117	1.8	117	92	0	359	27	0	27	45	1.54
38732010--38732146	25	5.7	25	80	13	171	43	13	0	42	1.44
38732020--38732191	69	2.5	69	94	1	290	45	13	0	40	1.43
38732114--38732201	45	2.0	45	88	4	133	48	12	0	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38732623--38732657	18	1.9	18	94	0	61	34	8	31	25	1.86
38733309--38733333	7	3.6	7	100	0	50	60	12	0	28	1.32
38733504--38733541	20	1.9	20	84	10	51	57	2	5	34	1.35
38734477--38734565	29	3.3	29	65	26	86	46	0	24	29	1.53
38734469--38734580	51	2.2	51	93	4	199	47	0	24	28	1.52
38741438--38741478	19	2.2	19	86	8	57	31	9	4	53	1.55
38742003--38742065	30	2.0	32	87	12	94	22	7	12	57	1.61
38748538--38748782	50	4.9	49	76	2	202	22	26	21	28	1.99
38748538--38748781	100	2.5	100	78	3	242	22	27	21	29	1.99
38748644--38748835	50	3.7	51	80	8	174	21	28	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170