genome.fa.s16.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  163  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48590366--48590391	6	4.3	6	100	0	52	19	0	0	80	0.71
48594535--48594571	6	6.3	6	87	6	58	81	0	18	0	0.70
48594539--48594572	17	2.0	17	100	0	68	76	0	23	0	0.79
48598721--48598769	16	3.1	16	90	0	80	40	2	34	22	1.66
48598981--48599021	16	2.6	16	84	11	57	53	0	0	46	1.00
48598981--48599031	15	3.5	15	84	10	61	52	0	0	47	1.00
48599269--48599327	29	2.1	28	87	6	84	49	5	10	35	1.59
48599719--48600128	108	3.8	108	92	1	637	32	20	18	29	1.96
48602379--48602586	44	4.8	44	84	3	278	29	24	18	27	1.98
48602362--48602673	85	3.6	84	80	6	322	29	23	18	28	1.98
48602375--48602673	44	6.9	43	76	13	213	29	24	18	28	1.98
48602428--48602758	175	1.9	174	81	5	409	29	23	19	28	1.98
48614390--48614799	108	3.8	108	92	1	637	32	20	18	29	1.96
48619917--48619944	14	2.0	14	100	0	56	64	0	28	7	1.20
48619920--48619964	19	2.5	18	82	17	58	66	0	26	6	1.16
48623765--48623827	27	2.3	27	89	5	92	22	33	15	28	1.95
48625057--48625103	24	2.0	24	95	0	85	21	12	23	42	1.87
48627870--48627971	53	1.9	53	86	4	143	30	12	9	47	1.74
48629197--48629226	6	4.8	6	95	4	51	80	0	3	16	0.85
48631669--48631707	2	19.5	2	100	0	78	0	48	0	51	1.00
48631942--48631989	3	16.0	3	100	0	96	0	33	0	66	0.92
48638347--48638389	20	2.2	20	88	8	63	55	9	0	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48639220--48639329	43	2.6	42	86	4	159	22	22	21	32	1.98
48639663--48639733	21	3.4	21	90	0	106	2	46	18	32	1.63
48641745--48641819	25	2.9	25	80	11	89	34	2	18	44	1.64
48641747--48641866	34	3.6	33	76	14	113	36	2	20	40	1.66
48641795--48641878	25	3.5	25	81	10	86	38	1	20	40	1.60
48641856--48641907	13	4.1	13	73	14	54	32	3	19	44	1.69
48641752--48641866	9	13.4	9	74	15	93	36	2	20	40	1.66
48641924--48641969	16	2.5	19	76	23	62	36	0	10	52	1.37
48641898--48641969	36	1.9	38	83	10	96	34	0	16	48	1.47
48645166--48645215	7	7.0	7	81	4	55	42	38	2	18	1.61
48645166--48645224	22	2.7	21	76	2	55	44	38	1	15	1.56
48645368--48645433	14	4.8	13	75	7	60	51	33	0	15	1.43
48645474--48645523	17	3.0	17	94	2	84	50	16	0	34	1.45
48645528--48645873	113	3.1	111	80	8	385	26	23	20	30	1.99
48645680--48646077	188	2.1	188	92	0	661	27	22	18	31	1.97
48645868--48646293	114	3.7	114	78	4	446	26	22	19	30	1.98
48654316--48654358	21	2.1	20	83	12	52	34	0	2	62	1.08
48659022--48659073	8	6.5	8	82	8	61	63	1	1	32	1.16
48659021--48659077	24	2.4	24	82	8	80	63	1	3	31	1.22
48659226--48659290	25	2.7	25	88	6	91	52	4	7	35	1.51
48659304--48659369	25	2.5	27	75	9	73	62	0	3	34	1.11
48659311--48659446	25	5.6	25	69	17	81	58	2	4	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48659846--48659882	19	1.9	19	88	0	56	37	45	0	16	1.47
48659961--48660063	30	3.4	30	91	0	170	23	2	48	25	1.65
48659961--48660208	60	3.9	60	85	12	352	24	3	47	24	1.68
48660062--48660086	12	2.1	12	100	0	50	44	8	32	16	1.76
48660074--48660208	30	4.5	30	91	0	227	25	3	46	24	1.69
48659977--48660166	103	1.8	103	93	0	326	26	3	45	24	1.69
48660477--48660550	30	2.4	31	82	8	80	36	12	10	40	1.78
48660890--48660954	31	2.1	31	83	8	80	35	13	15	35	1.87
48668307--48668358	9	5.8	9	77	6	52	42	0	0	57	0.98
48668294--48668351	18	3.2	18	79	13	64	46	1	0	51	1.11
48671589--48671613	12	2.1	12	100	0	50	20	16	32	32	1.94
48677635--48677701	27	2.5	27	80	2	73	41	0	1	56	1.08
48678473--48678514	18	2.2	20	87	8	61	59	4	0	35	1.19
48678472--48678515	19	2.2	20	80	11	56	61	4	0	34	1.16
48678472--48678531	20	3.0	20	77	15	54	58	6	0	35	1.24
48678493--48678531	21	1.9	20	89	5	60	58	7	0	33	1.26
48680750--48680798	23	2.1	24	81	11	57	51	0	4	44	1.20
48683949--48684018	25	2.8	26	73	16	67	60	7	0	32	1.24
48688580--48688616	18	2.1	18	94	0	65	81	5	0	13	0.86
48688609--48688712	29	3.6	28	73	12	102	34	18	7	39	1.79
48688608--48688732	59	2.1	59	85	8	166	35	16	7	40	1.76
48688608--48688732	29	4.2	28	72	12	99	35	16	7	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48689085--48689142	13	4.7	13	74	14	52	75	0	24	0	0.80
48689401--48689457	11	5.1	11	89	8	80	82	0	17	0	0.67
48689405--48689470	13	4.9	14	82	12	68	81	0	18	0	0.68
48689405--48689459	12	4.7	12	91	8	87	83	0	16	0	0.64
48689403--48689471	11	6.2	11	88	6	61	79	0	20	0	0.73
48689405--48689459	23	2.3	23	93	3	92	83	0	16	0	0.64
48689626--48689659	5	6.6	5	90	6	50	32	0	0	67	0.91
48689625--48689661	11	3.5	11	88	7	58	32	0	0	67	0.91
48689789--48689894	19	5.6	19	69	16	67	36	12	8	42	1.73
48689793--48689892	18	5.3	18	69	16	51	37	12	9	42	1.74
48689792--48689833	20	2.2	19	86	4	57	42	9	9	38	1.70
48690019--48690327	18	17.5	17	70	13	150	30	12	11	44	1.79
48690019--48690326	35	8.7	35	76	9	238	30	12	12	44	1.79
48690080--48690142	20	3.2	20	74	17	60	39	11	9	39	1.73
48690080--48690159	39	2.1	39	81	9	92	38	12	7	41	1.71
48690201--48690227	14	1.9	14	100	0	54	55	0	7	37	1.28
48691595--48691792	50	3.8	50	87	4	261	21	29	23	25	1.99
48691602--48691792	106	1.9	100	90	6	301	20	29	23	25	1.99
48691887--48691918	13	2.5	13	94	0	55	56	12	0	31	1.37
48699130--48699378	50	4.8	50	85	4	284	20	29	24	26	1.99
48699129--48699378	100	2.4	104	88	6	357	20	29	24	26	1.99
48699473--48699504	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48699716--48699773	30	1.9	30	89	0	89	31	24	3	41	1.71
48711278--48711518	50	4.7	50	85	3	275	20	29	23	26	1.99
48711270--48711518	100	2.4	104	87	6	346	21	29	22	26	1.99
48711613--48711644	13	2.5	13	94	0	55	56	12	0	31	1.37
48711856--48711913	30	1.9	30	89	0	89	31	24	3	41	1.71
48719583--48719692	41	2.7	41	81	5	141	20	24	23	30	1.98
48722404--48722445	22	2.0	22	85	4	59	47	23	16	11	1.80
48727466--48727499	17	2.0	17	94	0	59	44	50	0	5	1.26
48732094--48732127	17	2.0	17	94	0	59	44	50	0	5	1.26
48746659--48746685	13	2.1	13	100	0	54	62	14	0	22	1.31
48751475--48751642	79	2.1	78	80	11	182	51	1	5	41	1.34
48757881--48757921	5	8.4	5	84	15	59	65	0	0	34	0.93
48764330--48764360	4	8.0	4	92	7	55	74	0	0	25	0.82
48764665--48764729	32	2.1	32	97	2	123	47	12	9	30	1.72
48769249--48769275	14	1.9	14	100	0	54	7	7	0	85	0.75
48769251--48769284	13	2.6	13	85	0	50	2	2	2	91	0.57
48769299--48769350	17	2.9	17	82	5	68	0	9	15	75	1.05
48769270--48769358	47	1.9	46	86	6	126	1	11	13	74	1.14
48769576--48769614	4	10.0	4	94	5	71	74	0	0	25	0.82
48769921--48769983	32	2.0	32	93	3	110	50	11	6	31	1.63
48775488--48775525	18	2.1	18	95	0	67	42	0	2	55	1.14
48784569--48784623	21	2.8	19	81	13	58	29	1	3	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48790630--48790687	24	2.4	24	85	8	73	43	22	13	20	1.87
48791204--48791283	40	2.0	40	100	0	160	32	10	22	35	1.87
48801329--48801441	58	1.9	60	82	7	142	28	15	14	41	1.86
48801490--48801649	88	1.8	87	82	6	207	40	16	16	26	1.89
48802797--48802873	10	8.0	9	75	10	64	58	2	5	33	1.34
48802797--48802856	19	3.1	20	76	7	61	60	3	5	31	1.35
48802779--48802873	19	5.2	17	70	20	59	57	2	4	35	1.30
48802929--48802975	20	2.3	21	78	10	53	68	2	4	25	1.19
48803595--48803634	19	2.1	19	85	0	53	17	7	5	70	1.30
48803603--48803645	19	2.2	20	87	4	61	13	6	4	74	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170