genome.fa.s16.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  143  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43040864--43041398	125	4.3	126	85	3	731	29	22	17	29	1.97
43040864--43041398	251	2.1	250	91	0	854	29	22	17	29	1.97
43044896--43044950	11	4.7	11	80	10	65	56	7	0	36	1.27
43050513--43050550	19	2.0	19	85	10	51	28	5	0	65	1.14
43053583--43053622	18	2.2	18	86	0	53	17	30	7	45	1.76
43053864--43053910	21	2.2	21	85	7	60	34	34	23	8	1.85
43054163--43054754	49	12.4	47	83	11	557	42	35	0	21	1.58
43054163--43054792	22	27.4	21	71	22	368	42	35	0	21	1.58
43054210--43054355	34	4.2	34	69	17	120	43	36	0	20	1.52
43054201--43054777	98	5.9	98	85	7	640	42	35	0	21	1.58
43054518--43054565	15	3.4	15	71	26	50	41	37	0	20	1.53
43054316--43054777	27	18.2	27	70	21	292	41	36	0	21	1.59
43055518--43055910	126	3.1	125	85	3	538	30	22	16	30	1.96
43056075--43056112	9	4.2	9	89	0	58	57	26	0	15	1.38
43056075--43056112	18	2.1	18	100	0	76	57	26	0	15	1.38
43056924--43056948	13	1.9	13	100	0	50	32	4	0	64	1.12
43078461--43078494	18	1.9	18	88	5	52	55	5	2	35	1.39
43085452--43085492	14	2.9	14	85	7	55	41	4	4	48	1.46
43088067--43088125	30	2.0	30	82	0	73	49	6	8	35	1.60
43089344--43089386	20	2.3	19	88	8	61	55	6	6	30	1.53
43092690--43092729	19	2.0	21	85	9	57	60	2	0	37	1.11
43095074--43095134	13	4.7	13	76	8	52	45	16	0	37	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43096799--43096850	20	2.5	21	75	12	54	63	3	0	32	1.12
43104414--43104453	21	1.9	21	94	0	71	45	10	2	42	1.51
43110363--43110519	43	3.7	42	81	7	183	30	26	17	24	1.97
43117715--43117869	18	8.9	18	66	17	76	40	0	3	56	1.20
43117879--43117920	20	2.0	21	86	4	59	35	0	2	61	1.09
43117649--43118125	121	4.0	120	95	3	849	42	0	4	52	1.26
43117649--43118125	237	2.0	238	94	3	845	42	0	4	52	1.26
43118072--43118106	17	2.0	18	94	5	63	40	0	0	60	0.97
43118262--43118358	45	2.2	45	87	5	135	32	29	5	31	1.80
43118338--43118386	16	3.1	16	93	0	89	20	34	6	38	1.77
43119756--43119804	3	16.3	3	86	0	71	61	2	4	32	1.26
43119889--43119964	23	3.4	22	78	5	64	60	2	7	28	1.38
43119883--43120119	3	79.7	3	65	14	53	63	4	7	24	1.40
43121086--43121110	8	3.1	8	100	0	50	24	12	52	12	1.72
43121480--43121629	40	3.8	40	97	0	282	25	18	26	30	1.98
43121626--43121938	134	2.3	134	97	0	581	29	24	20	25	1.99
43121636--43121953	46	7.1	45	67	11	170	28	24	20	26	1.99
43121936--43122694	132	5.8	132	93	1	1337	30	25	16	27	1.97
43121936--43122694	262	2.9	262	96	1	1378	30	25	16	27	1.97
43121936--43122694	394	1.9	394	94	1	1333	30	25	16	27	1.97
43161099--43161162	3	21.7	3	81	12	55	62	1	6	29	1.29
43162366--43162423	23	2.6	21	86	8	71	15	6	39	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43162581--43162728	41	3.6	41	93	0	260	27	20	30	21	1.98
43162581--43162732	82	1.8	83	97	1	288	26	21	30	22	1.99
43162909--43163009	36	2.9	35	75	11	91	31	7	19	40	1.81
43169187--43169365	43	4.2	43	75	11	152	32	28	15	24	1.95
43171382--43171466	40	2.1	40	84	4	109	49	14	5	30	1.66
43171542--43171729	86	2.2	85	83	6	252	42	16	8	32	1.78
43171825--43171994	86	2.0	87	81	3	200	44	17	6	31	1.74
43175206--43175266	10	5.8	10	79	14	61	40	4	0	54	1.22
43176165--43176269	7	14.6	7	73	12	61	38	41	0	19	1.58
43176160--43176269	21	5.2	21	77	8	89	38	42	0	18	1.56
43176916--43177056	41	3.4	41	81	1	122	30	24	22	21	1.99
43177094--43177227	40	3.3	41	75	12	116	19	23	22	35	1.96
43177155--43177233	40	2.0	40	89	0	122	16	22	24	36	1.94
43178203--43178402	78	2.6	76	76	10	194	37	4	16	41	1.69
43178794--43178986	41	4.7	41	92	0	314	27	20	29	22	1.98
43182988--43183024	3	12.3	3	100	0	74	67	0	0	32	0.91
43187885--43187927	16	2.7	16	77	0	50	30	25	0	44	1.55
43194992--43195029	6	6.2	6	90	3	58	63	0	21	15	1.31
43202369--43202394	12	2.2	12	100	0	52	34	15	19	30	1.93
43202702--43202860	85	1.9	86	88	4	241	30	8	22	38	1.83
43205756--43205828	21	3.5	21	75	7	67	16	24	17	41	1.90
43220477--43220501	13	1.9	13	100	0	50	40	24	4	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43224187--43224242	27	2.1	27	86	3	78	35	23	23	17	1.95
43224059--43224427	103	3.6	103	92	0	605	32	28	19	18	1.96
43225491--43225524	11	2.8	12	91	8	52	35	8	11	44	1.72
43235425--43235465	20	2.0	20	100	0	82	19	4	19	56	1.60
43244926--43244951	13	2.0	13	100	0	52	30	0	7	61	1.24
43249331--43249596	43	6.2	43	85	2	331	27	31	19	21	1.98
43250478--43250639	43	3.8	43	86	2	211	28	29	19	22	1.98
43250790--43250857	35	2.0	35	82	8	86	55	1	2	39	1.24
43251339--43251390	23	2.3	23	79	0	59	34	7	30	26	1.85
43255976--43256045	33	2.1	33	86	5	97	35	41	1	21	1.62
43256865--43256982	41	2.9	39	80	8	119	32	27	22	18	1.97
43260740--43260828	7	12.7	7	75	15	51	38	37	0	24	1.56
43260735--43260831	21	4.6	21	74	13	76	37	37	0	25	1.57
43261152--43261198	14	3.4	14	87	0	67	53	31	0	14	1.42
43261410--43261453	22	2.0	22	90	0	70	34	27	18	20	1.96
43261445--43261604	41	3.9	41	90	4	234	27	30	21	20	1.98
43265009--43265045	17	2.2	17	95	4	67	24	0	37	37	1.56
43265281--43265315	18	2.0	17	88	5	52	54	0	0	45	0.99
43265296--43265483	61	3.1	61	70	14	199	48	6	1	42	1.39
43265380--43265431	15	3.6	15	80	12	56	53	1	0	44	1.11
43265264--43265556	120	2.4	121	94	1	518	49	5	2	42	1.37
43265497--43265779	91	3.0	93	84	7	317	48	3	3	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43265597--43265657	28	2.2	28	85	5	81	50	3	0	45	1.17
43265604--43265747	47	3.1	46	65	23	113	49	4	2	44	1.33
43265572--43265779	91	2.3	90	90	4	326	46	4	3	45	1.39
43265597--43265739	44	3.2	43	68	16	119	48	3	2	46	1.31
43265622--43265760	47	3.0	47	68	17	137	49	4	2	43	1.34
43271659--43271709	26	2.0	26	96	0	93	17	11	23	47	1.81
43276026--43277008	120	8.2	120	98	0	1885	44	2	5	47	1.40
43276597--43276631	18	2.0	17	88	5	52	45	0	0	54	0.99
43276837--43276871	18	2.0	17	94	5	61	42	0	0	57	0.99
43277227--43277295	16	4.2	16	90	3	111	37	36	1	24	1.65
43277227--43277295	33	2.1	32	91	2	111	37	36	1	24	1.65
43283484--43283537	26	2.1	26	100	0	108	38	3	11	46	1.57
43283491--43283546	26	2.2	26	90	0	85	44	1	8	44	1.45
43294961--43295017	24	2.5	23	72	16	57	33	3	17	45	1.65
43301331--43301383	22	2.4	22	80	0	61	66	1	1	30	1.13
43302328--43302368	21	2.0	21	95	0	73	24	19	26	29	1.98
43303859--43303949	11	8.6	11	73	21	79	57	0	3	39	1.15
43303851--43303935	39	2.1	40	91	4	136	60	0	2	37	1.10
43303910--43303955	22	2.1	21	84	4	56	65	0	2	32	1.05
43304384--43304422	20	2.0	19	95	5	69	61	0	0	38	0.96
43313114--43313160	24	1.9	25	83	12	62	46	6	2	44	1.40
43315228--43315273	21	2.3	21	81	7	60	52	8	6	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43317636--43317778	33	4.3	32	67	9	88	32	16	23	27	1.96
43335324--43335390	5	13.6	5	98	1	127	40	0	0	59	0.97
43335403--43335469	32	2.1	32	83	5	82	73	5	14	5	1.23
43336143--43336189	24	2.0	24	84	16	62	31	0	17	51	1.46
43336409--43336485	40	1.9	40	83	0	100	29	18	20	31	1.96
43340074--43340104	14	2.2	14	94	0	53	70	3	0	25	1.02
43340704--43341047	180	1.9	180	98	0	670	35	11	16	36	1.85
43341585--43341689	46	2.3	46	91	0	165	27	12	22	37	1.90
43343750--43343944	98	2.0	98	95	0	354	36	25	10	27	1.89
43345017--43345108	19	4.8	19	89	0	148	36	15	9	38	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170