genome.fa.s16.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  44  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12747783--12747830	18	2.5	19	86	6	62	12	6	8	72	1.26
12748028--12748064	19	2.0	19	89	5	58	27	18	0	54	1.44
12750283--12750329	24	2.0	24	86	0	67	46	4	4	44	1.42
12751001--12751056	21	2.7	21	94	0	94	28	8	33	28	1.87
12754043--12754092	6	8.2	6	91	4	82	38	0	62	0	0.96
12754043--12754100	18	3.2	17	76	13	55	39	0	60	0	0.97
12756283--12756334	23	2.3	23	89	0	77	38	1	11	48	1.51
12756292--12756371	13	6.6	13	76	16	73	37	2	13	46	1.57
12756300--12756370	36	2.0	36	94	0	124	36	1	15	46	1.55
12763632--12763676	13	3.7	13	82	17	69	37	0	15	46	1.46
12763625--12763676	23	2.3	23	89	0	77	36	0	15	48	1.45
12763634--12763678	23	2.0	23	100	0	90	35	0	17	46	1.49
12767424--12767508	42	2.0	42	100	0	170	32	21	9	36	1.85
12774491--12774529	19	2.1	19	85	9	53	43	7	0	48	1.31
12774494--12774524	16	1.9	16	100	0	62	41	6	0	51	1.27
12779228--12779274	21	2.2	22	92	3	78	21	38	19	21	1.94
12785174--12785245	36	2.0	35	81	2	81	31	9	25	33	1.88
12786254--12786672	206	2.0	206	97	0	793	37	10	19	32	1.86
12787986--12788025	19	2.1	19	85	0	53	60	10	2	27	1.42
12789851--12789884	16	2.1	16	88	0	50	44	2	11	41	1.56
12790058--12790086	14	2.1	14	100	0	58	27	20	10	41	1.85
12793156--12793211	29	1.9	28	82	13	69	57	1	3	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12793236--12793280	17	2.6	17	89	6	65	44	0	6	48	1.29
12793701--12793734	17	2.0	17	88	0	50	50	0	2	47	1.16
12802538--12802589	26	2.0	26	92	0	86	53	5	7	32	1.53
12805306--12805352	22	2.1	22	96	0	85	29	25	12	31	1.93
12814818--12814863	21	2.2	21	84	3	58	32	4	8	54	1.51
12817089--12817133	13	3.5	13	75	0	54	37	13	31	17	1.89
12817080--12817139	26	2.3	26	97	0	111	36	15	33	15	1.88
12822856--12822883	13	2.2	13	100	0	56	39	14	21	25	1.91
12825951--12826389	221	2.0	221	88	1	657	40	19	13	26	1.89
12827176--12827209	2	17.0	2	87	0	50	50	2	2	44	1.32
12830224--12830275	23	2.3	22	75	21	54	9	23	1	65	1.32
12843800--12843824	13	1.9	13	100	0	50	68	0	16	16	1.22
12848669--12848702	10	3.3	10	84	8	50	8	5	11	73	1.24
12848667--12848709	11	4.0	10	82	11	50	9	4	11	74	1.20
12871766--12871811	23	2.0	23	83	4	58	32	43	4	19	1.71
12872258--12872304	24	2.0	24	82	0	58	29	2	12	55	1.49
12886611--12886692	41	2.0	41	97	0	155	29	6	15	48	1.69
12889825--12889875	24	2.1	24	88	0	75	29	15	27	27	1.96
12890430--12890467	19	2.0	19	94	0	67	34	5	18	42	1.73
12890505--12890587	41	2.0	41	88	4	123	30	6	12	51	1.62
12904380--12904418	19	2.0	19	90	5	60	66	5	0	28	1.12
12904380--12904433	18	2.8	19	86	5	65	66	3	1	27	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12904380--12904434	19	2.8	19	81	13	51	67	3	1	27	1.17
12904446--12904482	8	4.5	8	93	6	65	70	0	0	29	0.88
12905005--12905259	43	6.0	43	76	4	203	29	29	14	26	1.95
12905429--12905494	34	1.9	35	84	9	91	53	1	3	42	1.25
12906937--12906997	28	2.2	28	85	5	79	32	24	9	32	1.88
12909539--12909589	24	2.1	24	96	0	93	47	1	3	47	1.32
12909996--12910055	22	2.8	21	80	7	75	33	41	0	25	1.55
12910337--12910400	21	3.0	20	78	10	65	35	37	0	26	1.57
12910405--12910438	7	4.7	7	85	7	50	41	32	0	26	1.56
12910405--12910447	15	2.9	15	86	3	61	39	34	0	25	1.56
12910658--12910712	25	2.2	25	75	12	60	21	9	7	61	1.50
12910802--12911097	82	3.6	82	80	3	337	31	26	17	25	1.97
12910796--12911097	41	7.4	41	81	5	306	31	25	17	25	1.97
12911183--12911287	40	2.7	39	76	10	115	22	20	21	35	1.96
12916016--12916507	50	9.8	50	77	6	399	22	27	21	28	1.99
12915945--12916438	244	2.0	244	94	0	855	22	26	21	29	1.99
12921020--12921056	17	2.2	16	90	4	56	21	0	2	75	0.92
12934752--12934784	14	2.4	14	94	0	57	69	3	21	6	1.24
12941956--12942001	17	2.6	17	83	10	58	60	6	21	10	1.52
12949743--12949933	41	4.6	41	92	0	310	23	26	20	28	1.99
12957379--12957569	41	4.6	41	90	0	301	25	26	19	29	1.98
12963082--12963140	24	2.5	24	85	0	82	44	3	16	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12965393--12965421	9	3.2	9	100	0	58	48	20	0	31	1.50
12976523--12976577	16	3.5	15	81	13	58	52	0	0	47	1.00
12976523--12976578	17	3.6	16	79	9	62	51	0	0	48	1.00
12977452--12977493	22	1.9	22	95	0	75	47	4	2	45	1.36
12985105--12985433	162	2.0	162	97	0	622	35	10	20	33	1.88
12985653--12985704	23	2.3	23	93	0	86	50	11	0	38	1.39
12988701--12988770	36	1.9	36	100	0	140	45	8	8	37	1.65
12989708--12989734	14	1.9	14	100	0	54	55	14	0	29	1.40
12995689--12995725	17	2.1	18	85	14	51	70	2	2	24	1.14
13009861--13009922	23	2.5	24	87	7	81	51	20	9	17	1.73
13011284--13011933	322	2.0	321	93	0	1095	44	8	25	21	1.81
13012373--13012419	24	1.9	25	91	4	78	46	4	6	42	1.48
13015273--13015320	21	2.3	21	88	0	69	25	31	6	37	1.81
13033121--13033174	25	2.2	25	100	0	108	42	3	16	37	1.66
13041588--13041618	15	2.1	15	93	0	53	38	3	32	25	1.72
13045946--13045976	15	2.1	15	93	0	53	38	3	32	25	1.72
13047652--13047784	57	2.3	57	87	2	187	27	9	15	46	1.78
13047652--13047800	57	2.6	57	82	4	140	28	9	16	45	1.78
13049260--13049290	13	2.4	13	100	0	62	35	22	0	41	1.54
13049751--13049892	20	7.1	20	77	6	108	39	21	28	9	1.86
13049751--13049889	40	3.5	39	76	10	129	38	22	29	10	1.87
13063755--13063827	17	4.3	17	75	0	74	27	28	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13063758--13063824	34	2.0	34	84	0	89	26	31	28	13	1.94
13069708--13069746	18	2.2	18	100	0	78	30	25	17	25	1.97
13073806--13073929	3	41.7	3	91	1	205	0	29	0	70	0.87
13079988--13080034	19	2.5	19	82	0	58	27	27	27	17	1.97
13085790--13085831	20	2.0	21	82	13	52	45	2	4	47	1.36
13089647--13089843	44	4.5	44	68	13	136	27	24	20	27	1.99
13089567--13089956	131	3.0	132	87	1	586	25	24	20	29	1.99
13089955--13090233	89	3.1	89	79	2	281	25	20	23	30	1.98
13090092--13090259	89	1.9	89	85	2	230	26	20	23	29	1.99
13090304--13090797	44	10.9	45	69	11	161	27	21	19	31	1.97
13090204--13090558	143	2.5	143	83	2	419	29	21	18	31	1.97
13090499--13090795	88	3.4	88	74	5	319	26	20	20	32	1.97
13091125--13091180	24	2.3	24	96	0	103	28	25	12	33	1.92
13093122--13093163	18	2.3	18	87	0	57	0	23	0	76	0.79
13093126--13093170	11	4.0	11	85	5	63	0	24	0	75	0.80
13093199--13093224	8	3.2	8	100	0	52	15	0	0	84	0.62
13096196--13096242	19	2.5	20	86	6	62	44	8	19	27	1.79
13098034--13098066	15	2.1	16	88	5	50	63	0	6	30	1.18
13098890--13098947	22	2.6	22	81	7	64	41	17	5	36	1.72
13104058--13104093	13	2.8	13	86	0	54	0	8	2	88	0.59
13106346--13106443	47	2.1	47	98	0	187	36	14	11	37	1.82
13107508--13107532	13	1.9	13	100	0	50	24	8	28	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13113287--13113327	14	2.9	14	81	3	55	24	53	0	21	1.46
13113390--13113437	7	6.9	7	90	0	69	52	27	0	20	1.47
13113366--13113505	14	9.9	14	72	7	86	45	30	1	22	1.62
13113547--13113582	7	5.3	7	86	6	56	44	38	0	16	1.48
13113548--13113642	14	6.8	14	70	13	61	46	33	0	20	1.51
13114026--13114271	41	6.0	41	81	7	268	30	23	23	22	1.99
13114026--13114272	123	2.0	123	83	4	311	30	23	23	23	1.99
13114657--13114706	25	2.0	25	88	0	73	38	12	12	38	1.80
13116925--13116955	6	5.3	6	96	3	55	54	0	12	32	1.38
13118607--13118633	13	2.1	13	100	0	54	29	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170