genome.fa.s16.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  63  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18628152--18628216	21	3.1	21	82	6	78	4	43	18	33	1.71
18630957--18631082	20	6.3	21	75	13	90	10	30	21	38	1.87
18630957--18631082	40	3.2	40	74	8	123	10	30	21	38	1.87
18635295--18635763	147	3.2	147	79	4	387	26	14	22	36	1.93
18635837--18635882	23	2.0	23	100	0	92	30	43	4	21	1.72
18638970--18639163	20	10.2	20	72	15	144	48	7	4	39	1.51
18638969--18639100	56	2.3	56	93	1	219	49	7	3	40	1.47
18639041--18639143	37	2.8	37	86	0	143	47	8	4	38	1.56
18639083--18639195	57	2.0	57	96	0	208	45	8	4	41	1.55
18638990--18639381	94	4.2	91	80	8	389	45	9	4	40	1.56
18639232--18639351	57	2.1	57	92	0	204	48	7	5	38	1.56
18639294--18639381	37	2.4	37	92	1	142	47	10	3	38	1.54
18639361--18639576	9	24.9	9	79	9	243	45	20	0	32	1.58
18639382--18639583	34	5.9	34	78	9	175	46	21	0	31	1.58
18639380--18639558	95	1.9	95	87	2	261	44	21	1	32	1.60
18639361--18639583	95	2.3	94	79	10	256	46	20	0	32	1.57
18642383--18642426	21	2.1	21	100	0	88	20	25	13	40	1.89
18654709--18654759	27	1.9	26	84	11	68	54	11	9	23	1.66
18655219--18655257	19	2.1	19	90	0	60	61	10	5	23	1.48
18656942--18657032	44	2.1	44	87	0	128	27	23	19	29	1.98
18656892--18657274	142	2.7	142	91	1	624	28	20	17	34	1.95
18657119--18657373	98	2.6	98	85	1	280	28	19	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18657324--18657419	44	2.2	44	84	3	122	28	21	20	29	1.98
18669623--18669673	27	1.9	26	84	11	68	58	7	9	23	1.56
18670133--18670171	19	2.1	19	90	0	60	61	10	5	23	1.48
18675575--18675669	45	2.1	45	90	0	145	31	23	15	29	1.95
18675666--18675861	51	3.9	50	77	4	205	31	28	16	23	1.96
18675672--18675857	101	1.8	99	84	5	239	32	27	16	23	1.95
18680578--18680672	45	2.1	45	88	3	138	30	23	16	29	1.96
18680689--18680864	51	3.5	50	77	4	183	31	26	17	24	1.97
18683417--18683468	22	2.3	23	87	6	72	44	26	9	19	1.81
18685938--18686108	41	4.2	41	81	7	188	23	30	13	31	1.93
18685944--18686104	82	2.0	82	85	4	218	22	31	13	32	1.92
18687518--18687641	50	2.5	50	81	2	151	27	23	28	20	1.99
18695056--18695245	50	3.7	50	83	4	209	27	20	28	23	1.99
18703678--18703844	41	4.1	41	84	0	235	23	28	14	32	1.94
18703711--18703777	21	3.2	21	70	4	64	23	34	14	26	1.94
18713012--18713081	35	2.0	35	85	0	95	11	21	11	55	1.66
18715554--18715715	75	2.2	75	82	8	204	26	11	11	51	1.71
18717294--18717337	22	2.0	22	100	0	88	36	9	9	45	1.68
18717854--18717882	13	2.1	14	93	6	51	68	13	6	10	1.37
18720013--18720048	18	2.0	18	94	0	63	38	2	0	58	1.13
18730141--18730331	50	3.7	51	81	8	190	26	22	27	23	1.99
18730583--18730621	20	2.0	20	90	10	62	56	5	23	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18732856--18732895	19	2.1	19	100	0	80	25	37	5	32	1.77
18737122--18737332	117	1.8	117	92	2	361	42	23	11	22	1.86
18738048--18738076	9	3.2	9	100	0	58	51	0	0	48	1.00
18738048--18738083	18	2.0	18	88	0	54	58	2	0	38	1.13
18745909--18745952	22	1.9	23	81	9	54	36	20	6	36	1.79
18758837--18758900	26	2.4	26	92	2	101	23	18	25	32	1.97
18764833--18764914	29	2.8	29	86	1	110	39	14	28	18	1.90
18764844--18764990	30	5.0	30	74	7	131	37	15	28	18	1.91
18764842--18765034	89	2.2	89	82	4	228	38	12	26	22	1.90
18764845--18764992	59	2.5	60	75	8	160	37	15	28	18	1.92
18764878--18765076	89	2.2	88	80	5	211	37	15	25	21	1.92
18768674--18768712	20	2.0	20	90	10	62	56	2	25	15	1.52
18775304--18775427	59	2.1	60	80	4	135	33	12	28	25	1.92
18775211--18775458	29	8.4	29	77	4	153	35	13	27	23	1.93
18779747--18779946	45	4.5	46	79	6	187	33	26	15	24	1.95
18779784--18779950	90	1.9	90	85	0	235	33	24	16	25	1.96
18779784--18779966	45	4.1	45	78	3	163	32	25	16	25	1.96
18786748--18786793	22	2.1	22	100	0	92	39	17	4	39	1.69
18796290--18796453	80	2.0	80	97	0	310	19	12	18	48	1.80
18797143--18797447	45	6.8	45	87	1	407	35	19	21	23	1.96
18802688--18802993	45	6.8	45	85	0	380	36	18	20	23	1.95
18802688--18803025	135	2.5	135	85	0	435	38	18	20	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18802693--18803041	90	3.9	90	82	2	378	38	18	20	22	1.94
18802686--18803035	45	7.8	45	81	3	319	38	18	20	22	1.93
18805027--18805125	43	2.3	43	81	10	121	18	27	31	23	1.97
18808364--18808424	31	2.0	31	100	0	122	36	3	19	40	1.68
18822232--18822275	19	2.3	19	88	0	61	38	0	45	15	1.47
18822232--18822292	7	8.6	7	77	16	54	36	0	47	16	1.47
18822240--18822285	15	3.0	16	82	17	62	36	0	47	15	1.45
18826299--18826338	17	2.3	18	86	4	55	12	7	42	37	1.71
18826693--18827006	44	7.1	44	64	11	131	24	22	20	32	1.98
18826643--18827019	132	2.9	132	93	0	621	24	22	20	32	1.98
18848250--18848302	16	3.3	16	78	0	61	41	3	28	26	1.73
18848284--18848376	44	2.1	46	87	4	136	31	4	27	36	1.76
18848650--18848706	16	3.8	15	72	27	50	54	1	0	43	1.10
18848652--18848686	18	2.0	18	88	5	54	54	2	0	42	1.15
18848768--18848802	18	2.0	17	88	5	52	54	0	0	45	0.99
18848522--18849206	233	3.0	235	88	8	1118	50	4	2	43	1.35
18848794--18848823	15	1.9	16	93	6	53	50	6	0	43	1.28
18848528--18848925	117	3.4	117	95	1	719	50	4	2	43	1.34
18848809--18849029	102	2.1	104	94	3	385	49	4	2	43	1.37
18849016--18849045	15	1.9	16	93	6	53	46	6	0	46	1.29
18848911--18849206	119	2.5	120	97	1	558	49	4	2	42	1.37
18848579--18849206	341	1.9	335	94	2	1123	50	4	2	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18854258--18854310	23	2.4	22	76	20	56	9	18	1	69	1.25
18857520--18857557	16	2.4	16	90	0	58	34	0	31	34	1.58
18857771--18857812	15	2.7	16	82	14	52	52	2	0	45	1.13
18857780--18857821	15	2.9	15	82	10	52	52	0	0	47	1.00
18857890--18857931	15	2.8	16	85	10	61	50	2	0	47	1.14
18857774--18858521	119	6.4	120	89	8	891	49	5	2	42	1.40
18857905--18858152	105	2.4	104	90	5	394	49	6	2	41	1.41
18858245--18858278	16	2.2	16	90	10	54	55	0	0	44	0.99
18858025--18858522	122	4.2	121	92	7	828	48	5	3	43	1.40
18858262--18858464	63	3.3	63	69	22	196	47	5	3	43	1.44
18858461--18858535	27	2.8	28	76	9	77	54	0	2	42	1.14
18858562--18858621	26	2.3	27	85	2	77	50	3	0	46	1.18
18858538--18858742	89	2.3	90	88	5	306	46	4	3	45	1.39
18867861--18867891	16	1.9	16	93	0	53	38	0	32	29	1.57
18868232--18868460	104	2.3	101	82	11	274	48	6	2	41	1.42
18868334--18868834	121	4.2	122	89	8	754	47	5	3	42	1.44
18868668--18868856	61	3.4	51	72	21	157	50	3	2	43	1.31
18868810--18868853	22	2.0	21	86	4	61	61	2	2	34	1.21
18868882--18868916	15	2.3	16	90	9	56	48	0	0	51	1.00
18868834--18869042	84	2.4	86	82	7	255	47	3	3	45	1.37
18874842--18874894	23	2.4	22	76	20	56	9	18	1	69	1.25
18878104--18878141	16	2.4	16	90	0	58	34	0	31	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18878355--18878396	15	2.7	16	82	14	52	52	2	0	45	1.13
18878364--18878405	15	2.9	15	82	10	52	52	0	0	47	1.00
18878370--18878736	105	3.4	104	83	13	463	49	6	2	41	1.40
18878475--18878515	15	2.7	15	92	7	66	48	2	0	48	1.14
18878675--18879134	57	7.6	58	68	21	286	48	5	3	42	1.43
18878609--18879123	123	4.2	123	97	1	957	48	5	3	42	1.44
18879163--18879222	26	2.3	27	85	2	77	50	3	0	46	1.18
18879148--18879344	90	2.2	92	90	1	308	45	4	3	46	1.41
18886659--18886715	22	2.6	21	83	5	69	64	3	1	29	1.20
18886659--18886716	21	2.7	22	83	5	73	65	3	1	29	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170