genome.fa.s16.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  86  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26639134--26639190	22	2.6	22	86	5	80	17	42	22	17	1.89
26640394--26640426	14	2.4	14	100	0	66	42	18	0	39	1.50
26641783--26641816	14	2.4	14	90	0	50	44	0	0	55	0.99
26645358--26645441	37	2.3	37	85	8	109	35	13	11	39	1.81
26646895--26646977	41	2.1	38	86	6	112	50	1	34	13	1.49
26647032--26647079	22	2.2	22	85	7	62	50	2	0	47	1.12
26647021--26647104	39	2.2	39	81	10	102	51	3	0	45	1.18
26651315--26651837	126	4.2	126	88	1	757	29	16	15	38	1.90
26651920--26652023	34	2.9	36	81	13	135	42	12	0	45	1.42
26651925--26652029	37	3.0	33	83	10	122	39	12	0	48	1.41
26652003--26652062	28	2.2	27	90	3	93	38	18	0	43	1.50
26652003--26652079	28	2.8	27	82	7	84	40	18	0	41	1.50
26668831--26669015	51	3.6	51	83	6	225	29	14	25	30	1.94
26668832--26668914	26	3.2	26	65	27	68	30	12	25	32	1.92
26668835--26669052	101	2.1	102	79	4	235	31	13	24	30	1.93
26672721--26672745	8	3.1	8	100	0	50	24	0	0	76	0.80
26676543--26676592	12	4.1	12	72	23	50	52	0	2	46	1.12
26682558--26682666	42	2.6	42	86	2	139	34	10	18	36	1.84
26682756--26682872	48	2.4	48	88	0	171	24	18	23	33	1.97
26682756--26682875	24	5.0	24	86	0	141	24	18	23	34	1.96
26691663--26691710	25	1.9	25	82	0	60	31	14	16	37	1.89
26693850--26694037	89	2.1	90	93	2	333	40	34	4	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26696967--26697013	21	2.3	20	79	10	60	27	23	29	19	1.98
26697445--26697529	24	3.6	24	80	1	100	23	14	29	32	1.94
26699707--26699754	10	4.6	10	82	10	51	35	0	6	58	1.23
26704660--26704801	41	3.4	43	76	13	127	31	27	19	21	1.97
26707520--26707706	41	4.6	41	85	4	236	20	27	16	35	1.94
26707516--26707706	81	2.3	81	84	6	226	20	28	15	35	1.94
26714536--26714664	27	4.8	27	86	1	179	41	21	18	18	1.91
26714536--26714665	53	2.4	54	83	5	174	40	22	18	18	1.91
26721740--26721906	91	1.8	90	88	5	255	46	12	21	19	1.82
26730173--26730359	29	6.4	29	81	2	180	34	11	29	24	1.91
26730223--26730393	87	2.0	87	91	0	279	33	12	30	22	1.92
26730225--26730417	87	2.2	87	87	3	273	35	12	30	22	1.91
26730265--26730460	29	6.8	28	75	12	121	36	14	28	20	1.92
26730225--26730445	87	2.5	87	84	4	232	35	12	29	22	1.91
26733488--26733556	21	3.4	21	68	11	54	57	4	7	30	1.45
26737309--26737347	20	2.0	20	90	10	62	15	23	5	56	1.59
26737548--26737738	50	3.7	50	79	4	184	23	28	21	26	1.99
26745181--26745325	49	2.9	50	80	10	179	21	27	23	27	1.99
26771931--26772182	43	5.9	41	80	5	125	34	24	15	26	1.94
26771937--26772177	129	1.9	127	80	6	279	32	24	15	26	1.96
26771940--26772182	86	2.8	86	81	3	267	33	24	15	26	1.95
26774492--26774675	39	4.6	39	85	4	235	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26774492--26774708	79	2.7	78	84	6	233	25	21	27	25	2.00
26782463--26782684	40	5.6	39	85	7	240	24	22	27	25	2.00
26782516--26782717	76	2.6	77	83	6	214	25	21	27	25	2.00
26786223--26786328	40	2.7	40	80	2	115	30	24	16	28	1.97
26786178--26786469	155	1.9	155	87	1	433	28	20	18	31	1.97
26786374--26786544	40	4.3	40	76	10	152	24	16	22	35	1.95
26786374--26786544	80	2.1	80	84	2	218	24	16	22	35	1.95
26789312--26789356	18	2.6	17	80	13	56	73	0	11	15	1.10
26790755--26790792	19	2.0	20	89	5	60	63	7	0	28	1.23
26815242--26815432	40	4.8	40	92	1	233	27	27	21	24	1.99
26820300--26820407	38	2.8	38	88	0	153	36	18	15	29	1.92
26824789--26824814	13	2.0	13	100	0	52	69	0	15	15	1.20
26824685--26824804	57	2.1	58	84	7	156	46	6	19	27	1.74
26827794--26827837	23	1.9	22	82	17	54	38	0	25	36	1.56
26838259--26838283	12	2.1	12	100	0	50	52	16	16	16	1.76
26866841--26867238	137	3.0	127	80	14	407	42	8	4	44	1.54
26866935--26867250	137	2.3	137	90	1	499	42	8	4	44	1.54
26879245--26879353	41	2.7	41	91	1	166	33	15	29	22	1.95
26879285--26879348	21	3.1	21	67	13	60	34	17	26	21	1.95
26884547--26884637	41	2.2	41	82	0	101	41	13	21	23	1.88
26887923--26888186	40	6.7	40	85	4	241	23	21	28	27	1.99
26887923--26888186	80	3.3	79	82	4	282	23	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26895775--26896027	39	6.7	37	84	10	237	23	20	28	26	1.99
26895839--26896027	76	2.5	73	84	8	238	23	20	28	26	1.99
26895853--26896060	115	1.8	112	79	7	240	24	20	28	25	1.99
26895839--26896027	74	2.5	73	84	8	229	23	20	28	26	1.99
26906009--26906111	50	2.1	50	90	3	163	47	10	10	31	1.72
26909851--26909949	28	3.5	29	83	6	114	30	27	15	27	1.96
26923753--26923797	13	3.0	16	81	18	69	44	13	6	35	1.70
26925383--26925415	18	1.9	17	88	11	50	54	0	0	45	0.99
26925489--26925533	5	8.4	5	81	13	54	55	2	2	40	1.24
26925489--26925569	18	4.9	16	74	17	67	55	4	1	38	1.29
26925489--26925598	34	3.3	33	85	8	125	55	4	0	39	1.27
26925589--26926057	249	1.9	251	83	4	612	45	7	10	36	1.66
26928829--26928855	13	2.1	13	100	0	54	44	7	18	29	1.77
26932240--26932345	41	2.6	41	87	0	149	23	17	22	35	1.95
26932799--26932949	71	2.2	70	84	3	189	28	9	17	45	1.79
26940322--26940462	41	3.5	41	92	2	223	24	18	22	34	1.96
26940322--26940477	81	1.9	81	87	5	226	23	18	23	33	1.97
26940896--26941030	70	1.9	69	80	8	157	31	8	16	43	1.78
26959003--26959047	22	2.0	22	83	8	56	40	8	0	51	1.33
26963149--26963240	46	2.0	46	100	0	184	47	15	17	19	1.82
26963610--26963648	18	2.2	18	90	9	62	5	15	2	76	1.06
26967506--26967544	20	2.0	20	89	0	60	48	2	2	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26967642--26967682	20	2.0	20	90	0	64	43	12	12	31	1.79
26968865--26968958	46	2.0	46	91	0	152	28	26	9	35	1.88
26971401--26971697	50	5.8	50	83	3	310	23	28	20	27	1.99
26975520--26975618	28	3.5	28	87	4	119	27	15	27	30	1.96
26981409--26981631	40	5.6	39	85	6	247	25	27	21	26	1.99
26989291--26989515	40	5.7	40	87	5	280	24	27	22	25	2.00
26989291--26989515	79	2.8	79	83	7	285	24	27	22	25	2.00
26989291--26989515	119	1.9	120	83	8	298	24	27	22	25	2.00
26993029--26993161	46	2.9	46	87	4	187	31	25	6	36	1.80
26994535--26994580	21	2.3	20	78	14	51	30	6	17	45	1.73
27002304--27002352	24	2.0	24	100	0	98	48	4	16	30	1.64
27004183--27004236	19	2.8	19	83	8	56	48	5	3	42	1.44
27004608--27004647	21	1.9	21	100	0	80	55	12	10	22	1.67
27016728--27016870	50	2.8	49	84	7	180	26	15	27	30	1.96
27016793--27016874	26	3.2	26	63	27	66	25	14	25	34	1.94
27016876--27016970	45	2.1	45	90	0	154	26	20	24	29	1.99
27021196--27021324	46	2.8	46	84	0	141	29	20	19	31	1.97
27026912--27027002	46	2.0	46	82	0	110	30	23	17	28	1.97
27027410--27027466	25	2.2	26	81	9	64	45	0	19	35	1.50
27027797--27027823	12	2.2	12	100	0	54	0	62	0	37	0.95
27030934--27031132	59	3.3	58	71	12	195	41	1	3	53	1.24
27030912--27031082	59	2.8	59	71	12	159	43	1	5	49	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27031054--27031188	18	8.0	17	69	19	77	41	0	2	55	1.17
27030912--27031154	120	2.0	120	96	0	450	43	1	4	50	1.31
27031069--27031127	26	2.3	25	85	8	82	40	0	1	57	1.09
27031082--27031136	15	3.9	15	72	18	55	45	0	0	54	0.99
27050439--27050481	17	2.4	18	80	11	52	23	23	37	16	1.94
27050448--27050480	17	1.9	17	93	0	57	24	21	36	18	1.95
27051128--27051186	30	2.0	30	83	3	75	49	13	5	32	1.64
27069913--27069962	10	5.2	10	77	18	61	46	24	2	28	1.64
27074595--27074698	25	4.2	25	85	1	111	29	19	25	25	1.98
27074595--27074698	50	2.1	49	83	1	127	29	19	25	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170