genome.fa.s16.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  61  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17799846--17801135	520	2.5	519	90	0	1983	27	25	17	29	1.97
17801022--17801062	21	2.0	21	85	0	55	21	34	7	36	1.82
17810942--17810972	14	2.1	15	94	5	55	80	0	0	19	0.71
17823244--17823292	21	2.4	20	82	3	62	65	8	6	20	1.41
17823246--17823292	20	2.4	19	82	10	58	65	8	6	19	1.41
17830697--17830778	43	1.9	43	92	0	137	31	28	17	23	1.96
17830797--17830896	43	2.3	43	83	6	114	27	19	20	34	1.96
17830820--17830941	43	2.8	43	85	2	147	27	22	19	30	1.98
17831285--17831355	21	3.4	21	80	0	88	5	40	14	39	1.69
17833624--17833668	9	5.0	9	83	0	63	31	4	22	42	1.73
17833991--17834153	73	2.2	72	84	8	209	47	6	9	35	1.63
17834271--17834409	66	2.1	66	82	2	163	48	12	4	34	1.60
17837318--17837544	7	31.9	7	73	8	118	44	34	1	20	1.60
17837318--17837404	15	5.9	15	77	11	92	37	43	0	18	1.50
17837318--17837404	29	3.0	29	85	8	106	37	43	0	18	1.50
17837860--17838106	114	2.2	115	85	2	327	29	23	20	27	1.98
17838041--17838146	40	2.6	39	85	5	131	26	27	22	23	2.00
17839187--17839270	40	2.1	40	84	4	107	23	28	21	26	1.99
17841705--17841746	18	2.3	18	87	0	57	45	7	26	21	1.77
17845441--17845474	12	2.8	12	90	0	50	20	0	0	79	0.73
17845431--17845472	21	2.0	21	90	0	66	21	2	0	76	0.90
17845428--17845474	18	2.6	18	83	13	60	23	2	0	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17845692--17845742	23	2.1	23	82	7	57	25	5	7	60	1.47
17846230--17846426	98	2.0	98	98	0	385	28	11	24	35	1.90
17850794--17850906	54	2.1	54	98	0	217	28	19	6	46	1.74
17851927--17852342	133	3.2	130	75	11	298	27	20	25	26	1.99
17851788--17852453	217	3.1	217	90	3	996	28	21	23	27	1.99
17851961--17852290	173	1.9	173	84	7	438	27	21	24	26	1.99
17852272--17852427	84	1.8	85	82	9	203	27	21	23	27	1.99
17851927--17852434	44	11.7	43	77	11	380	27	20	25	26	1.99
17853223--17853253	13	2.3	14	94	5	55	12	0	0	87	0.55
17853850--17853892	3	14.3	3	85	0	50	25	2	0	72	0.97
17853849--17853890	21	2.0	21	95	0	75	23	2	0	73	0.94
17853846--17853892	18	2.6	18	86	3	67	25	2	0	72	0.96
17854111--17854171	26	2.2	27	80	11	70	27	4	6	60	1.42
17854344--17854376	15	2.2	15	94	0	57	24	0	12	63	1.28
17854652--17854848	98	2.0	98	98	0	385	28	10	24	36	1.89
17856056--17856229	85	2.0	85	91	2	278	40	12	27	19	1.88
17858196--17858233	20	1.9	20	88	0	58	36	18	31	13	1.89
17873071--17873162	25	3.7	25	98	0	175	23	19	23	32	1.97
17873573--17873666	47	2.0	48	87	2	136	21	14	18	45	1.85
17874337--17874401	30	2.2	30	91	0	103	24	29	30	15	1.96
17880408--17880467	27	2.2	28	82	14	81	43	18	20	18	1.88
17880428--17880502	27	2.8	27	85	0	87	42	21	26	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17883845--17883914	27	2.6	27	95	2	113	31	28	12	27	1.93
17883845--17883942	28	3.5	28	90	2	135	31	28	13	26	1.94
17885555--17885618	25	2.6	25	76	0	65	21	23	23	31	1.99
17885666--17885713	13	3.5	13	85	5	60	43	2	25	29	1.66
17885675--17885738	13	4.9	13	82	3	76	42	4	21	31	1.74
17885666--17885738	26	2.7	26	83	8	76	42	4	23	30	1.73
17885694--17885749	26	2.2	26	83	6	69	46	3	23	26	1.68
17900595--17900635	17	2.4	17	88	8	57	78	0	2	19	0.87
17900595--17900635	8	4.8	9	79	11	50	78	0	2	19	0.87
17901292--17902058	50	15.3	50	67	9	346	24	19	22	33	1.97
17901400--17902089	100	6.9	99	80	4	701	24	20	22	32	1.98
17901400--17902089	200	3.5	199	85	2	814	24	20	22	32	1.98
17904241--17904347	27	3.9	27	79	8	101	9	9	5	75	1.18
17904257--17904326	28	2.6	27	84	4	95	10	7	7	75	1.18
17904256--17904339	12	7.4	12	70	15	54	10	7	7	75	1.20
17904261--17904348	33	2.6	34	80	5	99	11	6	6	75	1.20
17904278--17904356	39	2.1	36	86	6	104	11	5	6	77	1.11
17904296--17904357	9	6.2	9	83	10	52	9	4	3	82	0.93
17909805--17909837	16	2.1	16	88	11	50	54	9	12	24	1.66
17911794--17911860	27	2.6	24	73	17	62	19	28	17	34	1.95
17911890--17911947	25	2.3	25	81	0	71	18	22	20	37	1.94
17912596--17912622	2	13.5	2	100	0	54	0	0	51	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17913633--17913702	25	2.8	25	89	4	106	21	22	22	32	1.98
17915303--17915337	18	2.0	18	94	5	63	11	25	45	17	1.81
17916083--17916113	15	2.0	16	93	6	55	54	0	25	19	1.44
17918658--17918973	138	2.3	138	85	3	413	37	25	21	15	1.93
17918658--17918973	69	4.6	69	83	2	375	37	25	21	15	1.93
17919019--17919137	58	2.1	58	88	0	175	40	12	11	35	1.80
17922343--17922393	16	3.1	17	75	8	52	33	0	3	62	1.13
17922376--17922407	9	3.6	9	95	0	55	34	0	0	65	0.93
17923411--17923454	12	3.6	12	84	3	61	79	4	0	15	0.89
17924474--17924503	6	5.0	6	91	0	51	0	63	0	36	0.95
17924504--17924532	3	9.7	3	100	0	58	0	34	34	31	1.58
17927843--17927879	16	2.3	16	90	0	56	37	2	32	27	1.71
17928820--17928896	38	2.0	38	100	0	154	49	20	16	12	1.79
17939387--17939450	20	3.2	20	80	6	69	25	18	28	28	1.98
17939414--17939462	20	2.4	21	83	10	66	28	16	30	24	1.96
17940338--17940375	15	2.5	15	87	12	51	71	0	7	21	1.11
17954834--17954875	21	1.9	23	90	9	70	66	2	21	9	1.32
17954833--17954887	20	2.5	22	82	8	69	70	1	20	7	1.20
17956109--17956149	20	2.0	20	86	9	57	63	4	9	21	1.44
17956914--17957067	43	3.6	43	86	0	209	29	15	23	31	1.95
17959254--17959282	14	2.1	14	93	6	51	31	0	17	51	1.45
17966706--17966791	27	3.2	27	84	0	109	23	13	18	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17970070--17970115	17	2.6	17	86	3	56	30	13	13	43	1.81
17971090--17971292	27	7.5	27	78	5	187	22	15	19	42	1.88
17971086--17971292	54	3.8	54	80	5	213	21	15	20	42	1.89
17971111--17971292	81	2.2	81	84	5	226	22	15	20	41	1.90
17989222--17989265	22	2.0	23	90	4	72	40	0	4	54	1.21
17991597--17991783	100	1.8	105	79	6	222	29	19	26	24	1.99
17992032--17992070	12	3.2	12	85	0	51	51	5	23	20	1.67
17992033--17992076	20	2.2	20	87	0	61	52	4	25	18	1.64
17998539--17998581	6	6.7	6	80	15	50	58	16	4	20	1.56
17998607--17998694	9	9.8	9	78	0	95	22	10	22	44	1.83
18001034--18001364	50	6.6	49	78	11	260	24	29	19	26	1.98
18001034--18001318	100	2.8	98	78	11	290	24	30	19	26	1.98
18007027--18007219	50	3.7	50	83	4	215	25	21	27	24	1.99
18015374--18015418	16	2.8	16	93	0	72	40	11	22	26	1.87
18015373--18015425	16	3.3	17	82	12	67	41	9	22	26	1.84
18021204--18021309	52	2.0	52	90	0	167	34	19	19	25	1.96
18021204--18021298	26	3.7	26	91	0	154	35	20	17	26	1.95
18021479--18021552	27	2.8	27	87	6	98	17	24	22	35	1.95
18021538--18021587	26	1.9	26	91	0	82	22	20	22	36	1.96
18026483--18026614	48	2.7	50	76	8	137	29	13	23	33	1.93
18031851--18031968	62	2.0	60	83	8	150	51	4	4	39	1.41
18033926--18034054	49	2.6	50	82	2	152	27	22	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18033885--18034069	99	1.8	101	79	8	214	27	20	29	23	1.98
18041536--18041778	50	4.8	50	77	7	213	27	20	25	25	1.99
18044044--18044081	18	2.1	18	100	0	76	55	0	21	23	1.44
18050436--18050579	40	3.6	40	80	9	125	26	27	22	24	2.00
18054332--18054370	20	2.0	20	85	5	53	46	0	5	48	1.24
18054365--18054434	37	1.9	36	82	8	88	52	2	2	41	1.31
18055979--18056009	16	1.9	16	93	0	53	70	9	9	9	1.33
18061372--18061566	48	4.1	47	79	6	203	26	21	29	23	1.99
18068970--18069173	48	4.2	48	80	5	216	27	20	28	23	1.99
18068978--18069161	95	1.9	96	83	1	235	27	20	29	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170