genome.fa.s16.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  149  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44538543--44538581	20	2.0	19	85	5	51	33	0	10	56	1.33
44544623--44544677	25	2.2	25	86	0	74	27	14	27	30	1.95
44547067--44547315	77	3.3	75	86	8	321	19	17	30	32	1.95
44550997--44551152	84	1.9	84	86	2	224	20	32	14	32	1.93
44551079--44551229	66	2.3	66	94	2	259	23	34	9	31	1.88
44554524--44554556	15	2.2	15	94	0	57	0	36	24	39	1.56
44557156--44557348	99	2.0	92	90	6	296	27	12	17	41	1.86
44556849--44557351	248	2.0	250	97	2	956	27	12	20	40	1.88
44560924--44561037	57	2.0	57	98	0	219	31	24	11	32	1.91
44564859--44564914	21	2.7	21	94	0	94	26	10	35	26	1.89
44569708--44569759	25	2.1	25	89	7	79	17	23	15	44	1.86
44570824--44571405	120	4.8	120	95	0	975	43	1	4	50	1.31
44571541--44571638	45	2.2	45	87	5	137	33	29	5	31	1.79
44571617--44571647	16	1.9	16	93	0	53	22	35	3	38	1.71
44572527--44572883	30	11.9	30	92	5	575	38	9	0	52	1.35
44572525--44572883	121	3.0	118	92	5	598	38	10	0	51	1.35
44575366--44575438	21	3.4	21	86	1	101	52	19	28	0	1.46
44579185--44579251	34	2.0	34	93	0	116	50	16	7	25	1.71
44579243--44579269	14	1.9	14	100	0	54	66	3	7	22	1.33
44581671--44582207	204	2.6	204	86	0	727	35	18	22	23	1.96
44581679--44582214	68	7.9	68	85	0	649	35	18	23	22	1.96
44584461--44584529	21	3.3	21	70	8	59	44	21	20	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44584471--44584588	42	2.8	41	78	10	121	45	17	19	16	1.85
44593928--44593958	4	7.8	4	100	0	62	51	0	0	48	1.00
44595018--44595056	17	2.3	19	79	20	50	43	2	5	48	1.38
44597515--44597561	18	2.3	21	79	17	55	34	4	6	55	1.45
44604487--44604568	21	3.9	20	73	17	67	51	1	0	47	1.08
44604512--44604568	21	2.7	21	82	15	73	50	0	0	49	1.00
44608825--44608859	14	2.5	13	86	13	52	60	0	2	37	1.12
44611264--44611588	107	3.1	107	86	2	433	29	17	19	33	1.95
44622866--44622921	24	2.3	24	90	6	87	33	12	21	32	1.91
44623283--44623965	87	7.8	87	77	3	532	31	21	23	24	1.98
44623242--44623965	131	5.5	131	87	2	902	31	20	23	24	1.98
44623235--44623792	218	2.6	218	87	1	762	31	21	22	24	1.98
44625911--44626235	107	3.1	107	88	1	449	29	18	18	33	1.95
44636118--44636190	36	2.0	36	89	10	114	20	23	19	36	1.95
44638474--44638503	15	2.0	15	93	0	51	33	50	0	16	1.46
44644696--44644727	15	2.1	15	100	0	64	25	6	18	50	1.70
44649726--44649763	6	6.3	6	100	0	76	31	0	0	68	0.90
44652522--44652564	16	2.6	16	77	3	50	41	20	4	32	1.73
44653824--44653869	21	2.3	19	85	7	56	26	2	2	69	1.11
44674423--44674529	46	2.3	47	83	4	126	31	28	14	24	1.95
44674437--44674618	52	3.6	51	82	6	212	28	28	17	25	1.98
44681164--44681216	27	2.0	27	92	3	90	52	22	20	3	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44681888--44681966	11	7.2	11	84	9	90	22	34	0	43	1.54
44681888--44681966	33	2.4	34	85	8	101	22	34	0	43	1.54
44683778--44683820	18	2.4	18	84	0	50	18	25	9	46	1.79
44687425--44687840	126	3.3	126	89	0	607	27	19	18	33	1.96
44690568--44690637	30	2.3	31	80	7	81	32	18	4	44	1.69
44695337--44695524	59	3.2	59	66	11	150	41	3	3	51	1.35
44695326--44695614	119	2.4	120	93	2	492	43	2	4	50	1.34
44695446--44695501	15	3.5	18	75	24	63	42	0	0	57	0.99
44695400--44695582	56	3.1	58	66	23	146	42	2	6	49	1.39
44695566--44695600	18	2.0	17	88	5	52	45	0	0	54	0.99
44695554--44695828	147	1.9	149	95	1	500	47	2	3	46	1.35
44695713--44695747	18	2.0	17	88	5	52	45	0	0	54	0.99
44695909--44696003	45	2.1	44	84	1	118	33	25	6	34	1.81
44695984--44696035	16	3.2	16	91	0	77	36	34	0	28	1.58
44698573--44698615	21	2.0	21	86	8	61	34	0	6	58	1.25
44698599--44698901	37	7.7	37	69	18	150	42	0	4	52	1.28
44698646--44698799	18	8.9	18	66	18	76	40	0	3	55	1.21
44698580--44699058	120	4.0	120	94	3	840	42	0	4	52	1.26
44698766--44698834	14	4.5	16	72	20	58	39	0	0	60	0.97
44698775--44698845	16	5.0	14	70	24	51	39	0	0	60	0.97
44698580--44699052	239	2.0	240	95	1	851	42	0	4	52	1.26
44699196--44699292	45	2.2	45	85	5	126	32	28	5	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44699272--44699320	16	3.1	16	93	0	89	20	34	6	38	1.77
44717617--44717729	45	2.5	45	85	0	145	44	8	19	27	1.80
44718456--44718500	23	1.9	24	90	4	74	24	15	15	44	1.85
44718456--44718506	23	2.3	22	86	10	68	21	17	13	47	1.82
44721033--44721070	16	2.3	17	81	4	51	31	5	13	50	1.63
44727478--44727525	24	2.0	24	100	0	96	29	12	4	54	1.56
44737652--44737685	5	7.0	5	86	6	52	14	2	0	82	0.79
44738271--44738330	3	19.7	3	76	10	50	28	3	1	66	1.17
44738271--44738333	21	3.1	21	75	11	69	28	3	1	66	1.16
44738271--44738334	9	6.8	9	76	13	58	28	3	1	67	1.15
44741071--44741121	25	2.1	23	89	7	75	23	1	1	72	1.05
44744703--44744747	22	2.0	22	83	8	56	35	2	2	60	1.22
44745412--44745455	14	3.1	14	83	0	61	45	2	11	40	1.53
44746295--44746320	3	8.7	3	100	0	52	65	0	34	0	0.93
44751381--44751405	13	1.9	13	100	0	50	84	0	0	16	0.63
44751423--44751462	7	5.7	7	100	0	80	72	0	0	27	0.85
44752059--44752123	28	2.3	28	77	15	71	58	9	7	24	1.55
44756393--44756482	26	3.5	25	71	7	81	51	4	1	43	1.29
44758550--44758601	10	5.1	10	82	11	52	59	9	0	30	1.29
44768091--44768328	125	1.9	125	87	1	352	30	15	22	31	1.95
44768082--44768360	125	2.2	125	82	3	346	28	17	22	31	1.97
44771531--44771706	7	24.3	7	66	20	51	21	0	27	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44771538--44772179	22	29.6	21	69	16	227	23	0	27	48	1.55
44771543--44771713	21	7.9	21	77	9	148	19	0	28	51	1.47
44771653--44771753	15	6.8	15	71	13	66	18	0	27	53	1.45
44771664--44771750	37	2.4	36	75	12	86	19	0	28	51	1.47
44771608--44771764	29	5.3	30	69	14	96	21	0	28	50	1.49
44771742--44771808	21	3.2	20	82	2	80	26	1	26	44	1.63
44771749--44771808	20	3.0	20	85	2	75	28	1	26	43	1.65
44771830--44771867	14	2.6	15	83	4	51	26	0	23	50	1.50
44771864--44771949	14	6.0	15	68	15	56	24	0	25	50	1.50
44771921--44771977	15	3.7	15	81	4	53	19	0	24	56	1.42
44771950--44772063	15	7.8	15	70	20	80	20	0	28	50	1.54
44772010--44772073	29	2.2	29	89	8	96	18	0	29	51	1.47
44772025--44772093	13	4.8	13	74	22	59	20	0	27	52	1.47
44772154--44772229	13	5.5	13	70	14	55	28	0	30	40	1.57
44772161--44772243	29	2.9	27	75	10	76	27	1	30	40	1.64
44772181--44772269	15	6.1	14	72	6	61	26	1	28	43	1.62
44772238--44772278	15	2.7	16	85	7	50	24	0	24	51	1.49
44771538--44771721	43	4.2	42	81	8	192	19	0	28	51	1.47
44772236--44772745	43	11.5	43	68	16	224	19	0	30	49	1.52
44771936--44772759	22	36.6	22	69	15	313	21	0	29	48	1.55
44772426--44772471	15	3.0	15	87	3	56	15	0	34	50	1.44
44772537--44772571	15	2.3	15	95	0	61	17	0	25	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44772578--44772620	13	3.2	13	87	6	59	16	0	32	51	1.45
44772583--44772627	7	6.6	7	89	5	65	11	0	40	48	1.39
44772625--44772745	21	5.7	21	74	13	95	19	0	28	50	1.54
44772687--44772759	21	3.4	21	79	5	76	19	0	31	49	1.48
44772801--44772868	22	3.1	22	85	4	93	17	0	26	55	1.42
44772784--44772839	29	1.9	29	81	0	67	21	0	26	51	1.48
44773361--44773400	18	2.2	18	90	0	62	42	7	30	20	1.79
44775301--44775355	11	4.8	12	85	14	73	43	0	32	23	1.54
44782054--44782105	24	2.2	24	86	6	72	63	7	0	28	1.22
44786220--44786269	18	2.9	17	80	11	50	62	8	2	28	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170