genome.fa.s16.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  133  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40415033--40415159	20	6.3	20	70	10	89	15	33	18	33	1.92
40415087--40415182	40	2.3	42	82	8	117	19	32	16	31	1.94
40419782--40420101	134	2.4	134	82	2	374	35	16	23	24	1.95
40419782--40420101	67	4.8	66	78	4	293	35	16	23	24	1.95
40423671--40423788	62	1.9	60	86	6	166	47	4	4	44	1.42
40426721--40426747	11	2.5	11	100	0	54	25	22	11	40	1.87
40436704--40437021	159	2.0	159	97	0	600	38	17	15	28	1.91
40437248--40437291	21	2.1	21	82	0	52	29	4	4	61	1.36
40437495--40437536	22	1.9	22	85	9	59	50	16	2	30	1.58
40452967--40453003	18	2.0	19	89	5	58	27	5	5	62	1.39
40454445--40454669	43	5.3	43	80	3	204	26	28	16	27	1.97
40454862--40454945	43	2.0	43	82	0	105	42	11	13	32	1.80
40458053--40458103	21	2.4	22	86	3	77	39	0	35	25	1.56
40458725--40458753	15	1.9	15	100	0	58	44	34	0	20	1.52
40458711--40458754	22	2.0	22	90	0	70	45	34	0	20	1.51
40459075--40459155	21	3.8	21	74	11	67	40	33	0	25	1.56
40459102--40459139	14	2.7	15	84	12	53	42	28	0	28	1.56
40459081--40459155	22	3.5	23	73	12	70	41	30	0	28	1.56
40458927--40459516	295	2.0	296	88	4	888	42	26	2	28	1.67
40459312--40459378	22	3.0	22	76	8	73	32	41	1	23	1.64
40459347--40459381	8	4.5	8	89	7	54	37	48	0	14	1.44
40459347--40459381	15	2.2	16	90	5	54	37	48	0	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40459345--40459402	23	2.6	23	83	8	75	37	44	0	17	1.49
40459345--40459402	21	2.6	22	86	5	73	37	44	0	17	1.49
40459790--40460112	41	7.9	41	83	2	371	34	28	15	21	1.93
40459790--40460112	123	2.6	123	86	2	434	34	28	15	21	1.93
40459790--40460115	82	4.0	82	84	0	409	35	28	15	20	1.93
40460147--40460271	40	3.2	40	80	3	128	24	20	18	36	1.95
40463536--40463655	36	3.4	36	80	2	125	15	10	32	41	1.81
40464246--40464319	19	3.8	20	92	7	125	37	10	13	37	1.80
40464546--40464590	23	2.0	23	81	0	54	22	0	15	62	1.33
40464872--40464948	37	2.1	37	80	11	86	37	9	1	51	1.42
40464944--40464988	18	2.6	18	92	3	74	31	6	4	57	1.44
40473278--40473325	18	2.6	18	83	6	60	50	2	4	43	1.33
40477371--40477527	36	4.4	35	87	4	118	12	11	36	39	1.79
40477400--40477524	36	3.5	36	93	1	198	12	12	37	37	1.81
40479999--40480041	16	2.5	17	85	7	52	48	2	0	48	1.14
40492424--40492491	30	2.2	31	86	2	93	47	4	7	41	1.51
40495251--40495284	4	8.2	4	90	3	50	23	2	0	73	0.97
40506070--40506103	18	1.9	17	88	5	50	44	14	35	5	1.70
40506948--40507391	137	3.3	137	82	4	474	31	18	20	29	1.97
40507008--40507442	132	3.3	131	81	3	460	31	18	20	28	1.97
40507008--40507443	44	9.8	44	77	7	396	31	18	20	29	1.96
40507274--40507498	88	2.6	89	81	4	215	33	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40509180--40509223	3	14.7	3	95	0	79	31	0	2	65	1.05
40509338--40509377	16	2.4	18	80	19	52	20	2	0	77	0.88
40510504--40510580	31	2.6	29	80	13	77	23	15	11	49	1.77
40512512--40512550	20	1.9	20	84	5	51	46	7	10	35	1.67
40514416--40514455	20	1.9	22	90	10	66	35	12	17	35	1.88
40520906--40520969	19	3.3	19	89	8	101	39	9	14	37	1.78
40520907--40520982	21	3.7	21	91	3	111	42	9	11	36	1.74
40521178--40521216	19	2.0	21	85	10	55	15	10	5	69	1.34
40521422--40521480	3	20.0	3	80	16	70	32	0	0	67	0.91
40521422--40521481	18	3.4	18	84	11	79	33	0	0	66	0.92
40527862--40528046	44	4.2	44	65	10	117	30	20	22	25	1.98
40527812--40528420	132	4.7	132	89	3	926	30	20	24	24	1.99
40528123--40528303	44	4.1	44	65	8	107	32	20	22	24	1.98
40527856--40528377	257	2.0	257	96	0	954	30	20	24	24	1.99
40528380--40528759	44	8.8	42	72	11	225	26	21	23	28	1.99
40528379--40528842	44	10.7	44	70	16	202	27	20	23	27	1.99
40528371--40528805	217	2.0	217	92	0	726	27	20	24	27	1.99
40529153--40529209	21	2.7	21	94	0	105	42	10	10	36	1.74
40529406--40529444	19	2.0	21	85	10	55	15	10	5	69	1.34
40529664--40529703	3	13.3	3	84	10	55	32	0	0	67	0.91
40529648--40529702	15	3.7	15	74	16	53	30	0	1	67	1.01
40529650--40529701	12	4.1	12	80	14	52	28	0	1	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40534526--40534560	14	2.5	14	90	0	52	74	0	0	25	0.82
40534535--40534574	14	2.9	14	85	7	55	65	2	2	30	1.19
40534538--40534576	13	2.9	13	88	3	51	66	2	2	28	1.18
40534893--40534979	40	2.2	40	95	0	156	64	3	6	25	1.34
40536842--40536875	15	2.3	15	94	0	59	64	17	0	17	1.29
40536882--40536919	13	2.8	14	80	19	53	65	7	5	21	1.38
40540597--40540995	195	2.0	197	92	3	658	35	21	3	40	1.70
40549658--40549718	28	2.1	30	82	11	74	22	0	18	59	1.38
40550620--40550789	44	3.8	44	75	10	132	44	14	21	20	1.86
40550672--40550792	46	2.7	45	80	5	129	41	18	20	19	1.91
40550723--40550792	23	3.0	24	63	23	58	42	20	17	20	1.89
40551284--40551311	10	2.8	10	100	0	56	46	0	32	21	1.52
40553804--40553838	14	2.6	13	86	8	52	31	22	0	45	1.53
40554200--40554406	87	2.3	87	84	6	263	34	22	10	32	1.89
40554450--40554501	9	5.3	9	76	15	50	61	1	1	34	1.18
40554760--40554877	10	12.5	10	70	13	72	28	3	2	65	1.22
40554767--40554851	37	2.3	35	75	13	82	28	3	2	65	1.21
40554787--40554849	19	3.4	19	75	4	74	28	3	3	65	1.24
40554713--40554834	56	2.2	58	85	7	162	28	6	3	61	1.37
40554713--40554849	56	2.4	55	82	11	152	28	5	3	62	1.36
40554787--40554866	19	4.3	18	76	6	63	26	3	3	66	1.26
40554751--40554877	56	2.2	56	82	12	145	30	3	2	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40554951--40555149	91	2.2	90	86	2	274	32	12	21	34	1.90
40556173--40556223	21	2.4	22	80	6	70	54	7	3	33	1.47
40555818--40556350	263	2.0	265	94	1	926	41	9	15	33	1.79
40559743--40559802	13	4.7	13	73	8	52	65	5	3	26	1.29
40562265--40562297	11	2.7	13	81	18	52	51	0	0	48	1.00
40562265--40562312	24	2.0	24	87	0	69	54	2	0	43	1.12
40562331--40562379	19	2.6	19	84	9	64	63	0	10	26	1.26
40562385--40562443	30	1.9	32	83	13	79	45	1	5	47	1.34
40563204--40563243	20	2.0	20	85	4	55	32	7	0	60	1.25
40576391--40576419	15	1.9	15	100	0	58	37	0	0	62	0.96
40576767--40576806	13	3.2	13	85	3	55	70	2	2	25	1.13
40585838--40585922	35	2.4	35	86	2	125	42	32	12	11	1.80
40589580--40589612	17	1.9	17	93	0	57	57	0	0	42	0.98
40589585--40589616	11	2.8	12	90	9	57	59	0	0	40	0.97
40589582--40589632	26	2.0	26	84	7	68	62	1	0	35	1.06
40589838--40589876	19	2.0	21	85	10	55	69	5	10	15	1.34
40590035--40590092	22	2.6	22	84	7	73	43	17	3	36	1.66
40590048--40590126	21	3.8	19	80	12	77	39	16	7	36	1.77
40590082--40590125	21	2.1	21	100	0	88	38	13	9	38	1.77
40590413--40590664	128	2.0	129	82	3	312	28	21	20	30	1.98
40590561--40590664	44	2.4	44	83	3	129	31	21	20	26	1.98
40590971--40591346	44	8.7	43	81	6	417	29	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40591141--40591262	38	3.1	38	77	13	102	27	23	17	31	1.97
40590971--40591306	126	2.6	126	87	4	469	29	25	17	27	1.97
40591018--40591346	170	1.9	170	89	2	509	29	24	17	28	1.97
40591346--40591747	88	4.6	88	90	0	570	19	23	28	28	1.98
40598290--40598327	15	2.8	14	88	11	53	63	0	0	36	0.95
40598306--40598339	15	2.3	15	94	0	59	67	2	0	29	1.05
40598549--40598587	19	2.0	21	85	10	55	69	5	10	15	1.34
40598745--40598802	22	2.6	22	84	7	73	43	17	3	36	1.66
40598758--40598834	19	3.8	19	87	6	82	37	16	9	36	1.81
40601979--40602027	9	5.6	9	90	4	73	38	2	0	59	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170