genome.fa.s16.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  138  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41828002--41828098	48	2.0	48	100	0	194	24	22	14	38	1.92
41831913--41831958	24	1.9	24	95	0	83	47	17	15	19	1.82
41833814--41833870	10	6.1	9	77	18	55	33	1	1	63	1.15
41833802--41833867	19	3.6	19	80	11	68	28	3	3	65	1.23
41833816--41833890	19	3.8	20	76	16	77	37	1	1	60	1.14
41836486--41836523	3	12.7	3	100	0	76	68	0	31	0	0.90
41845412--41845453	22	1.9	22	95	0	75	30	23	16	28	1.96
41850206--41850788	40	13.9	40	70	17	337	23	21	22	31	1.98
41850154--41850794	127	5.1	126	91	1	987	23	21	22	32	1.98
41850374--41850747	83	4.4	86	69	19	255	22	22	22	31	1.98
41863852--41863891	16	2.6	15	82	17	55	77	2	2	17	0.99
41864558--41864628	3	23.7	3	79	13	67	66	2	2	28	1.20
41866829--41866881	26	2.0	27	88	3	81	33	7	9	49	1.64
41867825--41867879	18	3.1	17	87	7	74	45	0	0	54	0.99
41867882--41867930	19	2.4	21	83	10	66	26	6	0	67	1.14
41867883--41867926	19	2.2	20	92	4	72	22	6	0	70	1.11
41877457--41877503	20	2.3	20	86	13	62	34	2	4	59	1.29
41877808--41877838	16	1.9	16	93	0	53	29	0	0	70	0.87
41877834--41877859	10	2.6	10	100	0	52	50	7	0	42	1.31
41884346--41884494	67	2.2	67	80	4	167	32	17	15	34	1.91
41884417--41884931	131	3.9	131	83	1	620	33	16	13	36	1.88
41884501--41884699	64	3.0	66	69	15	176	33	15	13	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41900419--41900463	23	2.0	23	86	0	63	11	24	22	42	1.86
41901638--41901673	6	6.0	6	100	0	72	33	0	16	50	1.46
41904484--41904538	24	2.3	23	84	12	67	30	7	1	60	1.35
41911090--41911634	44	12.4	45	73	8	399	27	16	25	30	1.97
41911101--41911504	89	4.6	89	72	9	226	27	15	25	31	1.96
41911101--41911634	265	2.0	260	87	3	775	27	16	25	30	1.96
41911090--41911621	132	4.1	132	87	3	752	28	15	26	29	1.96
41911668--41911899	44	5.3	43	66	8	135	27	28	23	21	1.99
41911615--41911932	88	3.6	88	91	0	519	28	29	23	18	1.98
41911211--41911748	265	2.0	262	79	4	569	29	19	24	26	1.98
41911933--41912097	44	3.8	44	84	6	201	29	15	24	30	1.96
41912063--41912230	88	1.9	88	85	0	228	29	21	22	26	1.99
41912750--41913093	44	7.8	44	71	12	168	29	19	22	27	1.98
41914826--41914880	24	2.3	23	84	12	67	30	7	1	60	1.35
41930796--41930830	16	2.2	16	90	5	54	80	2	14	2	0.95
41931630--41931669	20	2.0	20	90	0	62	25	2	2	70	1.13
41938302--41938338	19	2.0	18	89	5	56	43	13	0	43	1.44
41943366--41943435	28	2.5	28	88	0	95	32	12	24	30	1.93
41944156--41944473	23	13.5	23	71	7	235	25	15	16	42	1.87
41944154--41944476	71	4.5	71	84	1	389	26	14	16	42	1.87
41944154--41944473	141	2.3	142	82	3	403	25	15	16	42	1.87
41944154--41944490	48	7.1	47	74	7	227	26	14	17	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41947393--41947443	23	2.2	23	82	10	59	39	13	3	43	1.63
41951865--41951912	25	1.9	25	83	8	62	33	0	20	45	1.52
41954040--41954068	14	2.0	15	93	6	51	62	3	0	34	1.12
41957997--41958052	29	1.9	29	85	0	76	42	12	10	33	1.77
41963438--41963507	29	2.3	29	85	4	86	22	14	15	47	1.82
41966875--41967135	129	2.0	129	83	1	326	17	15	15	52	1.76
41971097--41971150	29	2.0	26	82	10	63	50	16	12	20	1.78
41971543--41971965	126	3.4	126	91	0	659	33	18	20	27	1.96
41973703--41973770	34	2.0	35	94	2	120	47	10	2	39	1.53
41976061--41976152	11	8.4	11	77	12	100	45	0	32	21	1.52
41976077--41976152	33	2.3	33	90	4	118	44	0	31	23	1.54
41976964--41977009	15	3.1	15	75	18	51	60	2	0	36	1.09
41995174--41995420	76	3.2	76	98	0	476	42	15	20	21	1.88
42002534--42002780	76	3.2	76	98	0	476	44	14	19	21	1.87
42007698--42007733	11	3.3	11	96	0	63	19	8	41	30	1.81
42008301--42008376	38	2.0	38	92	0	125	50	7	3	38	1.50
42010335--42010377	18	2.4	18	96	0	77	23	9	27	39	1.85
42015379--42015412	14	2.4	14	90	9	52	35	26	0	38	1.57
42015482--42015516	16	2.1	17	89	5	54	42	8	0	48	1.33
42024172--42024567	70	5.6	70	78	6	234	27	20	23	29	1.99
42024222--42025021	70	11.4	70	76	2	557	26	18	22	32	1.97
42024344--42024970	139	4.5	138	78	5	398	27	18	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42026873--42026922	20	2.5	20	86	0	64	26	30	8	36	1.85
42029100--42029417	167	1.9	167	94	0	555	26	17	16	39	1.91
42030415--42030488	16	4.7	16	80	8	71	28	14	4	52	1.60
42042223--42042267	13	3.4	13	82	14	56	26	0	2	71	0.98
42043809--42043849	21	2.0	21	90	0	64	29	26	14	29	1.95
42045108--42045432	43	7.6	43	87	0	454	27	32	16	23	1.96
42045641--42045678	19	2.0	19	94	0	67	57	2	10	28	1.45
42051341--42051869	9	61.9	9	68	16	286	31	2	20	46	1.62
42051372--42051869	34	16.0	32	71	18	260	31	2	20	45	1.62
42051341--42051511	68	2.5	68	77	9	202	30	2	19	46	1.64
42051376--42051869	25	19.3	26	67	15	126	31	2	20	45	1.63
42051341--42051869	16	31.5	16	68	15	236	31	2	20	46	1.62
42051960--42052035	39	1.9	40	83	5	100	36	17	17	28	1.92
42051917--42052035	40	3.0	39	71	7	105	36	17	19	26	1.94
42052597--42052637	21	1.9	22	85	5	57	19	0	41	39	1.52
42056461--42056751	43	6.7	43	78	4	248	23	17	23	35	1.95
42056487--42056733	85	2.9	86	80	4	266	22	17	24	35	1.95
42056912--42056981	8	9.5	8	73	20	55	31	0	11	57	1.34
42056939--42056994	19	3.3	19	63	31	54	33	0	12	53	1.39
42056927--42056998	31	2.3	31	97	0	135	34	0	12	52	1.39
42056925--42057038	12	10.2	12	66	22	70	33	0	15	50	1.44
42056954--42057026	9	8.9	9	72	17	61	32	0	19	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42056958--42057060	21	4.6	21	77	16	75	33	2	17	46	1.63
42057041--42057066	12	2.2	12	100	0	52	46	7	7	38	1.61
42057097--42057196	45	2.2	45	94	1	173	49	7	4	40	1.49
42057162--42057189	13	2.2	13	100	0	56	46	7	7	39	1.59
42057486--42057525	21	1.9	21	89	0	62	20	17	22	40	1.92
42059890--42059942	7	7.6	7	86	0	79	26	52	1	18	1.56
42059888--42059942	28	2.0	28	92	0	92	27	50	1	20	1.58
42060030--42060103	14	5.1	14	71	14	53	33	40	1	24	1.64
42060055--42060099	21	2.1	21	88	8	65	33	42	2	22	1.66
42060706--42060806	41	2.5	41	88	1	141	34	27	16	20	1.95
42060690--42060806	40	2.9	40	85	1	162	31	26	17	24	1.97
42060849--42060938	40	2.2	41	84	7	121	18	18	23	38	1.93
42061062--42061246	43	4.3	43	86	2	248	30	28	18	22	1.98
42061062--42061253	85	2.3	87	85	4	266	30	27	19	22	1.98
42064009--42064054	24	2.0	23	83	12	58	30	17	4	47	1.67
42064753--42064805	3	18.0	3	94	3	81	71	0	0	28	0.86
42070018--42070141	27	4.6	27	87	0	149	20	17	22	39	1.92
42070027--42070141	54	2.1	54	91	0	185	19	19	20	40	1.91
42071052--42071091	15	2.7	15	88	3	55	20	2	12	65	1.38
42071309--42071373	28	2.3	28	91	0	112	33	23	12	30	1.91
42078551--42078633	43	1.9	43	85	0	112	25	20	21	32	1.98
42081315--42081354	20	2.0	20	95	0	71	47	15	17	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42083574--42083611	19	2.0	19	100	0	76	26	10	31	31	1.90
42092234--42092321	43	2.0	45	93	4	153	43	17	6	32	1.75
42092234--42092306	25	3.2	25	72	25	88	43	17	8	30	1.78
42092252--42092317	18	3.3	18	67	25	51	43	15	6	34	1.71
42092659--42092771	41	2.8	41	86	0	127	28	26	19	25	1.99
42092699--42092778	41	2.0	41	92	0	133	30	23	18	27	1.98
42096337--42096394	22	2.6	22	83	0	80	46	25	17	10	1.79
42096363--42096493	38	3.4	38	87	0	181	41	28	17	12	1.87
42109824--42109887	28	2.3	28	83	5	76	60	4	1	32	1.26
42113097--42113167	29	2.4	29	90	0	106	19	25	36	18	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170