genome.fa.s16.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  139  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42117253--42117311	30	2.0	30	86	6	84	20	38	0	40	1.53
42117972--42117997	5	5.2	5	100	0	52	23	19	19	38	1.93
42118895--42118992	20	4.8	20	68	21	69	43	4	2	50	1.32
42118924--42119042	49	2.4	49	78	12	120	44	5	4	46	1.44
42128700--42129261	280	2.0	280	99	0	1106	34	18	11	35	1.88
42130014--42130044	14	2.1	15	94	5	55	35	6	6	51	1.53
42146984--42147053	31	2.2	33	82	5	81	32	5	2	58	1.36
42181373--42181426	2	27.5	2	96	3	101	0	0	50	50	1.00
42202160--42202219	17	3.5	17	76	13	61	33	33	15	18	1.92
42212098--42212142	22	2.0	23	91	4	74	42	4	11	42	1.60
42215364--42215396	9	3.7	9	84	15	50	21	0	9	69	1.15
42217325--42217383	29	2.1	29	83	3	75	64	10	13	11	1.50
42230375--42230429	8	6.5	8	78	12	56	27	3	0	69	1.05
42230370--42230420	19	2.9	18	76	23	56	25	5	0	68	1.12
42230361--42230428	27	2.5	26	76	6	73	29	4	0	66	1.11
42230477--42230571	29	3.3	28	76	15	81	36	6	1	55	1.32
42230582--42230653	34	2.1	34	82	12	85	30	8	2	58	1.42
42231252--42231316	15	4.1	15	70	16	51	50	3	0	46	1.17
42237909--42237950	11	3.7	12	78	12	52	66	7	0	26	1.17
42238181--42238223	21	2.0	21	82	8	52	20	37	0	41	1.53
42239332--42239624	153	1.9	153	88	2	437	27	13	17	40	1.88
42243020--42243215	108	1.8	105	87	2	284	35	20	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42249915--42249983	28	2.4	29	81	11	88	62	0	4	33	1.15
42250184--42250318	10	14.1	10	69	10	61	31	5	0	62	1.17
42250264--42250336	19	3.7	19	75	7	74	24	4	2	68	1.20
42250324--42250395	28	2.5	29	79	2	74	31	2	1	63	1.17
42250432--42250634	89	2.3	89	82	5	232	33	9	20	36	1.86
42251521--42251557	19	1.9	19	100	0	74	37	0	0	62	0.96
42251815--42251873	31	1.9	30	86	3	82	38	13	8	38	1.75
42254479--42254518	18	2.3	18	91	4	64	32	5	0	62	1.17
42255654--42255683	12	2.5	12	94	0	51	63	3	0	33	1.11
42256219--42256365	43	3.4	43	95	0	258	29	14	15	40	1.87
42257754--42257814	16	3.8	16	76	6	61	37	21	9	31	1.86
42257757--42257819	32	2.0	32	84	6	83	36	19	12	31	1.89
42259253--42259328	30	2.4	31	81	16	86	38	3	3	53	1.38
42259752--42259796	20	2.2	21	84	7	58	66	0	2	31	1.04
42259761--42259808	19	2.6	18	80	9	60	66	0	4	29	1.10
42259864--42259913	10	5.3	10	79	13	52	22	0	4	74	0.99
42260018--42260254	85	2.8	85	79	8	250	34	12	16	37	1.86
42260841--42260931	29	3.1	29	76	9	78	64	0	5	29	1.16
42260860--42260901	21	2.0	21	90	4	68	71	0	7	21	1.09
42260860--42260931	20	3.6	20	81	3	74	68	0	5	26	1.12
42260801--42260931	10	13.7	9	68	19	61	62	0	3	32	1.18
42260878--42260942	30	2.2	30	83	2	78	66	3	6	24	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42261101--42261157	18	2.9	19	75	19	55	22	3	5	68	1.25
42269057--42269091	18	1.9	18	88	11	54	31	2	2	62	1.24
42269152--42269196	24	1.9	23	81	4	54	35	2	6	55	1.38
42269526--42269573	22	2.1	23	88	3	71	50	2	0	47	1.12
42275613--42275665	25	2.1	25	82	0	61	24	3	3	67	1.23
42282757--42283206	51	8.9	51	77	5	403	30	14	25	30	1.94
42282756--42283206	102	4.4	102	88	1	613	30	13	25	30	1.94
42286177--42286255	27	2.9	27	80	0	95	27	30	22	18	1.98
42286333--42286365	3	11.0	3	100	0	66	33	0	0	66	0.92
42290966--42290990	11	2.3	11	100	0	50	0	8	0	92	0.40
42298028--42298076	24	2.0	24	100	0	98	28	30	8	32	1.86
42298259--42298289	16	1.9	16	93	0	53	9	9	9	70	1.33
42299391--42299419	14	2.0	15	93	6	51	44	0	13	41	1.44
42299877--42299948	32	2.2	33	78	9	78	45	1	4	48	1.30
42302033--42302099	29	2.3	27	80	14	64	49	17	1	31	1.56
42302594--42302880	42	6.8	42	77	3	272	24	24	25	26	2.00
42302600--42302880	126	2.2	126	82	2	323	23	24	25	26	2.00
42311930--42312003	20	3.7	20	81	0	94	40	21	28	9	1.84
42324447--42324492	22	2.1	22	100	0	92	36	15	17	30	1.91
42328087--42328113	14	1.9	14	100	0	54	85	0	14	0	0.61
42333724--42333809	26	3.4	26	82	6	88	17	29	23	30	1.97
42333741--42333812	26	2.8	26	87	6	112	15	29	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42333847--42333900	24	2.3	23	81	9	63	14	29	24	31	1.95
42340103--42340224	41	2.9	41	82	7	147	28	15	25	30	1.96
42346154--42346201	22	2.2	22	100	0	96	16	8	20	54	1.68
42346928--42346995	26	2.7	26	81	4	86	16	27	23	32	1.96
42346917--42347077	24	6.6	24	73	12	98	17	26	22	33	1.96
42346937--42347067	47	2.7	47	71	13	115	18	26	22	32	1.97
42347034--42347091	24	2.4	24	85	5	73	12	29	25	32	1.92
42350842--42350925	37	2.2	38	83	8	100	38	1	3	57	1.24
42350875--42350965	29	3.1	28	75	12	94	35	4	4	56	1.39
42356175--42356243	11	5.9	13	79	17	57	23	28	1	46	1.61
42356179--42356235	11	5.0	11	86	4	69	22	29	1	45	1.63
42356179--42356243	22	2.9	23	81	9	80	24	27	1	46	1.62
42360678--42361119	126	3.5	125	90	1	674	29	23	17	30	1.97
42361243--42361284	15	2.6	16	74	11	50	57	23	0	19	1.41
42368380--42368412	14	2.4	14	90	5	50	27	0	0	72	0.85
42368555--42368589	17	1.9	19	88	11	56	65	11	2	20	1.37
42370376--42370408	5	6.6	5	100	0	66	60	0	0	39	0.97
42377822--42377855	14	2.3	15	90	5	52	88	2	0	8	0.62
42382026--42382296	42	6.4	42	84	5	323	30	21	23	24	1.98
42382047--42382295	127	2.0	127	84	6	335	31	20	23	24	1.98
42382026--42382296	85	3.2	81	84	6	310	30	21	23	24	1.98
42382749--42382817	21	3.3	21	77	4	59	2	39	18	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42388288--42388412	16	8.2	16	66	18	79	34	1	16	48	1.56
42388302--42388357	25	2.2	25	93	0	94	37	0	16	46	1.47
42388359--42389093	9	83.7	9	67	21	157	40	0	13	44	1.49
42388391--42389097	31	25.1	28	69	20	328	41	0	13	44	1.47
42388392--42388637	34	7.3	34	72	12	109	41	0	13	44	1.46
42388462--42389103	31	21.1	31	75	14	540	40	0	13	45	1.48
42388501--42388600	22	4.8	21	70	25	68	39	0	12	49	1.40
42388621--42388653	16	2.1	16	100	0	66	30	0	24	45	1.53
42388403--42389102	176	4.1	177	89	7	1044	41	0	13	44	1.47
42388677--42388776	22	4.8	21	70	21	75	39	0	12	49	1.40
42388944--42388992	16	3.1	16	100	0	98	30	0	24	44	1.54
42389338--42389380	18	2.4	18	76	0	50	65	6	0	27	1.18
42389670--42389776	18	6.1	18	74	20	109	42	0	13	44	1.43
42389653--42389775	39	3.4	37	82	14	141	43	0	12	43	1.41
42389641--42389767	22	6.0	22	68	23	76	43	0	11	44	1.41
42389726--42389792	31	2.4	27	73	20	64	40	1	13	44	1.53
42389641--42389805	57	2.9	55	70	18	133	41	1	12	44	1.49
42392061--42392112	14	3.6	14	71	5	50	32	40	3	23	1.72
42392488--42392565	38	2.1	38	83	13	99	35	43	1	19	1.59
42392755--42392989	114	2.1	113	86	3	319	28	26	18	25	1.98
42392919--42393062	73	2.0	73	87	0	207	27	24	21	26	1.99
42392959--42393268	114	2.7	113	87	2	433	26	26	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42392772--42393176	187	2.2	187	86	0	549	27	27	20	24	1.99
42396565--42396618	26	2.1	26	85	0	72	35	9	14	40	1.78
42400982--42401044	26	2.5	25	86	2	90	23	20	23	31	1.98
42401574--42401762	56	3.2	56	64	19	141	20	6	23	49	1.73
42401522--42401768	120	2.1	120	99	0	485	21	7	22	48	1.75
42402262--42402298	15	2.5	15	86	0	56	32	21	27	18	1.97
42404219--42404257	21	2.0	20	85	10	53	28	12	7	51	1.67
42404646--42404709	31	2.1	31	91	2	103	59	14	3	23	1.49
42406268--42406302	18	1.9	19	88	11	56	54	8	0	37	1.31
42406891--42406920	3	10.0	3	100	0	60	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170