genome.fa.s16.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  160  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47429601--47429652	24	2.2	24	82	6	61	36	9	5	48	1.60
47433141--47433179	11	3.5	11	82	6	51	46	12	0	41	1.42
47433227--47433265	20	1.9	21	89	5	62	41	0	0	58	0.98
47440143--47440169	13	2.1	13	100	0	54	70	14	0	14	1.17
47444411--47444517	51	2.1	52	82	5	128	56	6	5	31	1.48
47444784--47444826	3	14.3	3	90	9	70	65	0	0	34	0.93
47444783--47444825	21	2.1	21	95	4	79	62	0	0	37	0.95
47444784--47444842	27	2.2	27	85	8	77	66	1	0	32	1.02
47445288--47445342	19	2.7	21	80	11	78	36	9	10	43	1.72
47450403--47450488	12	6.5	13	75	20	65	72	5	8	13	1.27
47450454--47450516	28	2.2	28	86	5	83	76	4	14	4	1.12
47450403--47450475	24	2.8	24	76	21	76	72	4	6	16	1.22
47450403--47450518	42	2.8	39	81	5	106	71	6	10	12	1.30
47451525--47451558	12	2.8	12	90	0	50	64	2	20	11	1.39
47451579--47451616	13	2.8	13	82	17	51	73	0	18	7	1.06
47451580--47451630	21	2.4	21	74	6	50	74	1	17	5	1.11
47451633--47451695	33	1.9	33	84	12	85	55	6	25	12	1.60
47475524--47475553	8	3.9	8	95	4	53	53	0	0	46	1.00
47475539--47475583	12	3.7	12	82	11	56	53	0	0	46	1.00
47477206--47477254	18	2.6	19	78	15	57	30	2	4	63	1.24
47481699--47481758	30	2.0	31	96	3	113	40	30	8	21	1.83
47489174--47489228	2	27.5	2	100	0	110	0	0	50	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47490262--47490394	59	2.2	60	89	6	216	36	9	15	39	1.79
47503210--47503234	13	1.9	13	100	0	50	24	32	12	32	1.91
47504339--47504388	11	4.7	11	77	22	54	44	28	4	24	1.72
47504339--47504389	21	2.4	21	100	0	102	43	29	3	23	1.72
47505631--47505688	30	1.9	30	89	0	89	41	3	24	31	1.71
47505899--47505930	13	2.5	13	94	0	55	31	0	12	56	1.37
47506025--47506266	50	4.7	50	86	4	297	26	24	29	19	1.99
47506025--47506274	100	2.4	103	88	6	364	26	24	29	20	1.99
47513223--47513280	30	1.9	30	89	0	89	41	3	24	31	1.71
47513492--47513523	13	2.5	13	94	0	55	31	0	12	56	1.37
47513618--47513859	50	4.7	50	86	4	297	26	24	29	19	1.99
47513618--47513867	100	2.4	103	88	6	364	26	24	29	20	1.99
47516936--47516980	20	2.2	20	88	0	63	31	11	17	40	1.85
47521912--47521966	27	2.0	27	100	0	110	21	14	14	49	1.79
47522585--47522625	16	2.4	18	84	12	59	68	4	2	24	1.22
47529773--47529810	20	1.9	20	84	10	51	60	0	2	36	1.11
47533077--47533130	3	18.0	3	100	0	108	33	0	0	66	0.92
47538425--47538488	32	2.2	29	84	15	87	43	9	9	37	1.69
47540247--47540285	17	2.4	16	86	4	51	58	0	2	38	1.12
47543781--47543809	3	9.7	3	100	0	58	68	0	0	31	0.89
47547591--47547646	21	2.6	22	77	8	62	28	19	23	28	1.98
47550437--47550496	25	2.4	25	85	0	84	18	8	5	68	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47556307--47556331	12	2.1	12	100	0	50	20	0	0	80	0.72
47558811--47558848	16	2.4	16	86	8	51	50	2	0	47	1.15
47562075--47562220	79	1.8	79	94	0	256	29	10	15	43	1.81
47564356--47564412	24	2.4	24	87	0	78	28	33	26	12	1.92
47565344--47565420	37	2.1	36	95	2	136	29	12	7	49	1.69
47566247--47566285	17	2.2	17	86	4	51	15	0	10	74	1.07
47574404--47574436	14	2.4	14	90	5	50	21	0	0	78	0.75
47581154--47581311	33	4.7	33	70	6	120	29	17	24	28	1.97
47581085--47581319	101	2.3	101	90	2	373	30	16	24	28	1.96
47581317--47581368	26	2.0	27	92	3	88	53	3	21	21	1.61
47589256--47589298	22	1.9	23	85	4	61	53	2	0	44	1.13
47589297--47589325	11	2.5	12	94	5	51	55	0	3	41	1.17
47589280--47589381	39	2.6	39	87	7	163	62	0	1	34	1.13
47592966--47593015	26	2.0	26	88	4	75	36	16	6	42	1.72
47599622--47599660	20	2.0	20	90	5	62	61	0	2	35	1.10
47611514--47611593	39	2.1	39	95	0	142	26	10	22	41	1.85
47627721--47627764	7	6.3	7	97	0	61	6	43	0	50	1.29
47627721--47627764	14	3.1	14	93	0	70	6	43	0	50	1.29
47628974--47629027	27	2.0	28	92	7	94	48	1	0	50	1.11
47628971--47629036	27	2.4	27	85	14	91	50	1	0	48	1.10
47629427--47629456	11	2.7	11	94	0	51	40	3	0	56	1.16
47629421--47629482	32	2.0	31	84	9	81	33	1	0	64	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47631140--47631304	51	3.3	51	88	0	242	29	23	13	33	1.93
47633401--47633431	8	4.0	8	91	8	55	35	0	64	0	0.94
47644466--47644501	19	1.9	18	88	5	54	55	19	0	25	1.43
47644867--47644928	23	2.7	24	87	9	85	48	20	4	25	1.70
47646664--47646696	17	1.9	17	88	11	50	42	0	12	45	1.41
47648590--47648685	31	3.1	31	95	3	174	31	9	13	45	1.75
47649247--47649352	10	10.5	10	69	20	51	67	14	16	0	1.28
47649278--47649335	23	2.7	22	84	12	77	67	10	20	1	1.29
47649312--47649352	17	2.3	18	87	4	57	68	14	17	0	1.22
47652386--47652481	31	3.1	31	95	3	174	31	9	13	45	1.75
47656164--47656194	12	2.6	12	100	0	62	32	9	32	25	1.88
47657601--47657641	21	2.0	21	90	0	64	19	29	21	29	1.98
47672108--47672156	18	2.8	18	79	14	66	34	8	0	57	1.29
47672092--47672156	35	1.9	35	84	12	91	35	7	0	56	1.28
47673259--47673911	348	1.9	347	95	0	1189	35	13	18	32	1.90
47678799--47678889	45	2.0	45	87	4	130	38	6	6	48	1.55
47683999--47684055	27	2.1	27	100	0	114	47	7	28	17	1.73
47684469--47684524	19	2.8	21	75	22	57	42	5	8	42	1.59
47688990--47689015	6	4.3	6	100	0	52	15	0	0	84	0.62
47689723--47689750	6	4.7	6	100	0	56	28	35	0	35	1.58
47690786--47690832	24	2.0	24	91	0	76	46	2	23	27	1.63
47698191--47698215	6	4.2	6	100	0	50	32	52	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47701091--47701116	6	4.3	6	100	0	52	19	0	0	80	0.71
47703111--47703136	2	13.0	2	100	0	52	50	0	0	50	1.00
47704503--47704702	43	4.7	43	81	8	194	31	24	17	27	1.97
47709274--47709309	16	2.2	16	95	0	63	25	0	33	41	1.55
47709545--47709579	18	2.0	18	88	5	54	54	0	0	45	0.99
47709760--47709807	18	2.8	18	74	22	50	56	0	0	43	0.99
47709739--47709790	15	3.6	15	80	12	56	53	1	0	44	1.11
47709716--47709799	43	1.9	43	83	7	107	53	2	2	41	1.27
47709746--47709858	54	2.1	54	85	6	149	51	1	1	45	1.22
47713437--47713465	14	2.0	15	93	6	51	37	6	0	55	1.27
47713670--47713697	3	9.3	3	100	0	56	64	0	0	35	0.94
47714625--47714675	27	2.0	27	88	11	81	27	15	56	0	1.39
47717172--47717474	153	2.0	150	91	3	491	41	14	16	26	1.87
47724278--47724308	4	7.8	4	92	0	53	45	3	0	51	1.17
47724733--47724784	16	3.0	18	72	11	63	57	7	0	34	1.27
47724733--47724803	34	2.1	34	86	5	99	56	7	1	35	1.35
47731473--47731520	23	2.1	23	84	0	60	64	10	2	22	1.35
47733741--47733773	16	2.1	16	100	0	66	42	6	0	51	1.26
47734332--47734374	22	2.0	22	85	0	59	16	11	13	58	1.64
47735300--47735344	23	2.0	23	82	8	56	40	8	2	48	1.47
47738172--47738229	28	2.0	29	83	3	73	53	5	6	34	1.50
47742281--47742320	20	2.0	20	85	9	55	55	25	17	2	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47756049--47756187	44	3.2	44	67	15	124	24	20	25	29	1.99
47756001--47756344	88	3.9	88	84	4	371	29	22	22	25	1.99
47756037--47756174	43	3.2	43	68	11	127	27	20	25	26	1.99
47756178--47756343	86	1.9	86	90	0	260	31	23	20	24	1.98
47756528--47756851	44	7.6	43	69	14	188	31	20	21	25	1.98
47756520--47756896	87	4.5	82	76	10	334	31	20	22	26	1.98
47757679--47757718	20	2.0	20	85	9	55	55	25	17	2	1.55
47765620--47765701	43	2.0	42	90	4	130	37	17	13	31	1.88
47778243--47778459	107	2.0	108	96	0	400	42	19	20	17	1.89
47790284--47790314	4	7.8	4	100	0	62	77	0	22	0	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170