genome.fa.s16.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  124  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37927802--37927836	11	3.0	12	91	8	63	57	0	0	42	0.99
37932146--37932195	24	2.2	22	82	13	57	36	22	4	38	1.73
37938509--37938648	42	3.3	42	85	7	183	30	33	16	20	1.94
37939022--37939066	21	2.1	21	83	0	54	4	44	13	37	1.64
37939027--37939071	21	2.1	21	83	0	54	2	44	15	37	1.59
37941479--37941531	26	2.0	26	92	0	88	18	24	33	22	1.97
37941508--37941742	42	5.6	42	73	12	196	22	17	23	35	1.95
37941505--37941697	43	4.5	43	76	10	182	22	16	25	36	1.94
37941505--37941742	85	2.8	83	87	3	314	23	17	24	35	1.95
37950433--37950458	12	2.2	12	100	0	52	38	23	7	30	1.83
37950652--37950740	41	2.2	40	81	2	97	21	23	16	38	1.93
37950790--37950826	18	2.1	18	94	0	65	29	21	10	37	1.88
37957076--37957127	20	2.7	19	85	5	77	55	5	0	38	1.24
37957075--37957137	20	3.3	19	80	6	74	57	4	0	38	1.20
37962034--37962074	16	2.5	17	80	11	50	41	2	0	56	1.13
37966902--37966965	32	2.0	32	100	0	128	50	18	12	18	1.78
37967838--37967908	33	2.1	36	84	7	94	19	23	0	56	1.42
37968777--37968801	13	1.9	13	100	0	50	32	4	24	40	1.73
37970636--37970780	41	3.5	41	96	0	263	28	20	28	22	1.99
37972720--37972756	19	1.9	19	100	0	74	37	45	10	5	1.62
37975478--37975515	19	2.0	19	85	10	51	42	0	15	42	1.47
37976989--37977098	23	5.0	23	80	9	97	18	20	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37977025--37977084	20	2.8	21	82	7	77	13	25	28	33	1.93
37977341--37977378	19	2.0	19	85	10	51	47	5	10	36	1.61
37980837--37980875	14	2.8	13	81	11	51	61	7	5	25	1.44
37981912--37981943	13	2.3	15	89	10	50	81	0	3	15	0.82
37982280--37982320	20	2.1	21	86	13	61	2	2	26	68	1.15
37984481--37984506	9	2.9	9	100	0	52	92	7	0	0	0.39
37985839--37985875	18	2.1	18	100	0	74	35	5	5	54	1.47
37992027--37992061	6	5.8	6	100	0	70	0	0	48	51	1.00
37992476--37992511	16	2.2	16	90	0	54	41	5	27	25	1.77
37992491--37992587	44	2.2	44	81	5	106	31	4	26	37	1.76
37992744--37992778	18	2.0	17	88	5	52	54	2	0	42	1.15
37992753--37993069	61	5.3	61	69	11	258	48	5	3	42	1.43
37992984--37993018	18	2.0	17	88	5	52	54	0	0	45	0.99
37993102--37993138	16	2.2	17	86	13	51	54	0	2	43	1.14
37992730--37993139	120	3.4	120	96	0	766	48	4	3	43	1.38
37993121--37993361	47	5.3	46	70	20	175	47	3	2	46	1.34
37993078--37993361	91	3.0	98	87	8	312	47	2	2	46	1.31
37993180--37993322	44	3.2	43	71	20	139	48	2	2	46	1.25
37993146--37993361	91	2.4	91	93	0	369	46	3	2	46	1.35
38002572--38002798	53	4.3	53	77	13	211	18	21	18	42	1.89
38002563--38002798	27	9.0	26	79	8	228	18	20	19	41	1.90
38002702--38002808	26	4.2	24	76	20	92	17	20	14	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38002754--38002839	44	2.0	44	88	6	131	18	22	11	47	1.80
38008648--38008717	35	2.0	35	94	0	122	31	7	30	31	1.84
38020589--38020621	13	2.5	13	95	0	57	48	9	0	42	1.35
38026761--38026814	4	13.5	4	92	0	72	48	29	0	22	1.51
38041676--38041719	22	2.0	22	100	0	88	40	27	0	31	1.56
38043247--38043354	57	1.9	57	80	3	128	25	17	5	51	1.66
38044863--38044905	18	2.3	19	88	4	61	44	2	20	32	1.65
38052260--38052293	16	2.0	17	88	11	52	79	2	17	0	0.86
38055395--38055774	188	2.0	192	89	2	588	38	17	11	32	1.85
38056331--38056388	15	4.0	15	78	13	59	56	5	0	37	1.21
38056396--38056420	5	5.0	5	100	0	50	80	0	0	20	0.72
38061290--38061357	29	2.3	30	82	5	84	48	5	0	45	1.26
38066513--38066542	15	2.0	15	93	0	51	43	0	3	53	1.17
38069205--38069244	19	2.1	19	85	0	53	50	0	5	45	1.23
38075869--38075966	2	49.0	2	97	0	187	1	0	48	50	1.07
38077472--38077518	24	2.0	24	83	8	60	48	0	34	17	1.47
38078747--38079332	291	2.0	291	99	0	1154	32	20	16	29	1.95
38082540--38082973	78	5.6	78	94	0	717	38	5	13	42	1.67
38083669--38083825	41	3.8	41	90	4	228	28	19	28	24	1.98
38083635--38083821	82	2.3	82	80	11	197	28	19	28	23	1.98
38087870--38087916	19	2.5	19	86	6	60	27	19	8	44	1.79
38095054--38095185	51	2.5	51	83	4	165	43	18	25	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38096347--38096509	44	3.7	44	78	8	152	28	23	25	22	1.99
38096430--38096515	45	1.9	45	87	0	127	30	24	26	18	1.98
38098183--38098214	3	10.7	3	100	0	64	31	0	0	68	0.90
38098319--38098353	15	2.3	15	95	0	61	25	2	2	68	1.17
38099990--38100043	17	3.2	17	83	0	72	44	27	7	20	1.78
38101839--38101923	44	1.9	44	90	0	134	30	12	11	44	1.79
38104616--38104671	23	2.5	22	72	8	60	33	16	25	25	1.95
38108024--38108056	13	2.4	14	90	5	50	15	3	0	81	0.80
38108023--38108048	7	3.7	7	100	0	52	11	0	0	88	0.52
38110052--38110085	17	2.0	17	94	0	59	35	8	5	50	1.58
38110471--38110760	17	16.4	17	72	8	170	43	12	12	32	1.80
38110471--38110760	35	8.2	35	75	8	196	43	12	12	32	1.80
38110684--38110770	20	4.6	19	75	11	72	41	9	11	37	1.73
38110473--38110799	36	9.1	37	75	8	168	42	11	13	33	1.80
38110684--38110784	37	2.7	38	84	3	134	41	7	12	37	1.73
38110702--38110770	20	3.6	20	75	16	74	42	8	8	40	1.67
38110684--38110799	37	3.1	36	77	9	117	39	8	12	38	1.75
38111394--38111457	7	8.9	7	83	13	76	0	20	0	79	0.73
38111394--38111469	14	5.3	14	81	6	80	0	22	0	77	0.77
38111406--38111458	9	5.8	9	80	12	54	0	20	0	79	0.74
38111395--38111457	22	2.9	21	83	6	81	0	20	0	79	0.73
38111421--38111468	22	2.2	21	82	10	53	0	22	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38111651--38111691	17	2.4	17	91	0	64	7	4	0	87	0.65
38111679--38111759	4	20.0	4	78	16	78	0	27	0	72	0.84
38111679--38111757	26	3.0	27	83	10	83	0	26	0	73	0.84
38111652--38111759	7	15.0	7	76	15	62	2	20	0	76	0.90
38111873--38111928	22	2.6	21	83	8	69	0	19	7	73	1.06
38112256--38112360	29	3.6	29	79	6	113	42	5	20	31	1.75
38112666--38112719	24	2.2	24	93	0	90	20	37	24	18	1.94
38112690--38112995	77	4.0	77	82	5	386	36	21	16	25	1.94
38112690--38112980	75	3.8	74	81	6	341	34	22	17	26	1.96
38113794--38113851	1	58.0	1	75	0	53	0	5	6	87	0.65
38113791--38113850	13	4.7	13	85	10	61	0	6	6	86	0.70
38113784--38113836	24	2.2	24	86	0	70	0	11	3	84	0.73
38113816--38113851	14	2.5	14	95	4	63	0	0	11	88	0.50
38121206--38121327	17	6.9	17	75	12	86	44	13	10	31	1.79
38121206--38121314	35	3.1	33	77	13	94	44	12	11	31	1.77
38121210--38121318	18	6.1	18	75	13	91	43	12	10	33	1.77
38121379--38121494	18	6.4	18	68	19	71	43	9	10	37	1.71
38121346--38121494	35	4.1	35	74	14	115	41	11	10	36	1.76
38121416--38121535	40	3.1	39	84	3	161	39	6	12	41	1.69
38121473--38121516	22	2.0	23	90	4	72	36	6	11	45	1.67
38121416--38121535	39	3.1	37	81	10	141	39	6	12	41	1.69
38121935--38121978	17	2.6	17	85	7	54	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38122129--38122179	7	7.1	7	80	10	59	0	19	0	80	0.71
38122128--38122164	15	2.4	16	95	4	67	0	16	0	83	0.64
38122126--38122179	20	3.0	20	79	20	66	0	18	0	81	0.69
38122157--38122193	14	2.7	14	87	4	58	0	24	0	75	0.80
38122128--38122176	8	5.7	9	79	16	59	0	18	0	81	0.69
38122126--38122192	35	1.9	34	84	3	89	0	20	0	79	0.74
38122433--38122537	29	3.6	29	81	7	122	43	5	19	31	1.74
38131523--38132319	411	1.9	411	98	0	1540	20	11	28	39	1.88
38133877--38133901	12	2.1	12	100	0	50	24	8	44	24	1.80
38140017--38140076	20	3.0	21	76	9	63	15	25	15	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170