genome.fa.s16.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  119  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36484993--36485050	22	2.6	22	81	7	64	41	17	5	36	1.72
36485029--36485101	19	3.8	19	92	0	128	36	15	10	36	1.82
36485562--36486083	45	11.9	45	68	13	205	25	22	20	30	1.98
36485527--36485903	44	8.6	44	70	15	172	25	22	21	30	1.99
36485877--36486158	84	3.3	83	72	14	275	27	22	20	29	1.98
36485793--36486205	173	2.4	173	85	2	508	27	22	20	29	1.98
36485520--36486078	217	2.6	218	83	3	685	26	22	20	30	1.98
36485656--36486207	217	2.5	217	80	4	526	27	22	20	30	1.98
36485657--36486206	44	12.7	44	68	12	216	27	22	20	30	1.98
36486195--36486290	44	2.2	44	84	3	122	31	21	18	28	1.97
36486292--36486781	88	5.6	88	88	0	703	21	23	27	28	1.99
36486462--36486776	44	7.2	44	63	7	145	21	23	28	26	1.99
36488985--36489045	26	2.3	26	83	5	70	57	6	13	22	1.59
36491380--36491461	27	2.8	29	87	10	105	17	21	29	31	1.96
36491479--36491531	26	2.0	27	92	3	90	20	24	30	24	1.99
36491510--36491745	33	6.7	33	69	24	137	22	19	27	31	1.98
36491377--36491705	101	3.2	102	94	1	570	21	18	27	31	1.97
36494833--36495236	202	2.0	202	99	0	790	35	17	17	29	1.93
36496744--36496797	19	2.8	19	88	5	83	37	16	7	38	1.77
36499212--36499249	15	2.6	15	91	4	60	44	0	0	55	0.99
36499448--36499649	87	2.3	87	84	5	248	37	21	9	31	1.86
36499941--36500115	9	18.4	9	70	17	81	32	5	2	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36499947--36500035	39	2.3	39	75	12	94	31	6	3	58	1.41
36500024--36500116	38	2.4	38	85	3	116	31	3	1	64	1.16
36499941--36500115	19	9.2	18	68	20	90	32	5	2	60	1.31
36500014--36500100	28	3.1	27	81	6	111	31	3	1	64	1.17
36500048--36500131	38	2.2	38	80	4	98	35	3	1	59	1.22
36500952--36500995	18	2.4	19	84	7	63	70	0	0	29	0.88
36501720--36501759	18	2.2	18	86	8	55	7	15	2	75	1.14
36503355--36503397	19	2.2	20	87	8	61	32	0	4	62	1.15
36509268--36509303	17	2.1	18	89	5	56	41	2	0	55	1.14
36509270--36509312	17	2.5	17	84	3	50	46	2	2	48	1.27
36514993--36515037	19	2.3	20	81	14	58	40	13	0	46	1.43
36520297--36520345	23	2.1	23	92	0	80	36	20	18	24	1.94
36524642--36524693	26	2.0	26	85	3	70	50	1	1	46	1.23
36530157--36530193	13	2.8	13	95	0	65	16	27	43	13	1.85
36530578--36530629	21	2.3	23	83	12	72	13	5	7	73	1.24
36530592--36530627	10	3.2	12	77	22	51	13	5	8	72	1.27
36530599--36530654	24	2.3	23	85	11	69	14	3	7	75	1.16
36538469--36538630	69	2.3	69	87	0	225	33	26	22	17	1.96
36541402--36541597	69	2.8	69	83	1	223	32	24	23	19	1.98
36541550--36541697	50	3.0	50	87	0	215	31	27	25	15	1.96
36541647--36542039	69	5.7	68	80	4	396	30	24	23	20	1.99
36541647--36542026	137	2.8	136	78	6	399	30	24	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36548822--36548904	42	2.0	42	87	0	121	48	13	8	30	1.72
36548823--36548917	42	2.3	42	83	1	111	49	13	6	30	1.67
36548935--36548974	19	2.2	18	95	4	71	42	15	2	40	1.60
36551897--36551951	26	2.1	26	96	0	101	67	9	3	20	1.34
36551909--36551952	13	3.4	13	75	12	54	65	6	2	25	1.28
36552441--36552521	42	1.9	42	94	0	144	53	14	2	29	1.54
36552441--36552534	42	2.3	42	88	5	138	53	14	2	29	1.53
36553982--36554022	20	2.0	21	90	4	66	17	26	9	46	1.79
36554417--36554524	40	2.7	39	70	7	101	31	17	24	26	1.97
36554375--36554852	195	2.5	187	83	5	557	32	16	20	30	1.95
36554376--36554855	188	2.5	189	82	6	556	32	16	20	30	1.95
36555641--36555693	20	2.6	20	81	3	61	18	0	35	45	1.50
36555641--36555854	7	30.3	7	67	9	85	20	2	33	43	1.66
36556854--36557065	7	29.7	7	66	7	59	22	1	30	45	1.63
36557795--36557825	15	2.1	15	93	0	53	6	12	22	58	1.58
36558994--36559024	9	3.4	9	90	0	53	41	22	9	25	1.84
36560042--36560094	20	2.6	20	81	3	61	43	7	0	49	1.31
36560139--36560181	21	2.1	20	86	4	59	44	9	0	46	1.35
36560073--36560392	120	2.7	120	95	1	570	42	8	2	46	1.47
36560259--36560303	21	2.2	20	88	4	63	44	8	0	46	1.34
36560489--36560628	9	16.0	9	78	8	112	46	20	0	32	1.51
36560454--36560565	52	2.2	51	88	4	163	47	20	0	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36560489--36560628	70	2.0	70	94	0	244	46	20	0	32	1.51
36565654--36565682	14	2.1	14	93	6	51	34	0	10	55	1.34
36567875--36567991	20	6.0	19	73	16	73	58	0	5	34	1.28
36567915--36567980	10	7.0	10	77	19	63	60	0	4	34	1.17
36567915--36567969	10	5.5	11	80	20	68	60	0	5	34	1.20
36568460--36568492	8	4.4	8	88	11	52	39	0	0	60	0.97
36572661--36572730	23	3.3	22	76	13	74	44	8	0	47	1.34
36573780--36573830	23	2.3	23	86	3	68	50	0	3	45	1.20
36573995--36574047	26	2.0	26	100	0	106	18	18	26	35	1.95
36587522--36587563	13	3.2	13	96	0	75	30	7	19	42	1.78
36588257--36588386	34	3.9	34	73	13	108	38	1	13	46	1.53
36588247--36588371	64	2.0	64	85	6	173	40	1	14	43	1.55
36588455--36588701	125	2.0	124	85	7	331	36	17	15	29	1.92
36591768--36591829	25	2.5	26	74	15	76	54	1	0	43	1.09
36592226--36592262	18	2.1	18	89	0	56	43	8	24	24	1.81
36594001--36594068	30	2.3	30	86	0	91	33	2	29	33	1.73
36600359--36600408	22	2.3	21	76	10	55	30	0	2	68	1.01
36600470--36600503	10	3.5	10	92	8	61	38	0	0	61	0.96
36600682--36600711	11	2.7	11	94	0	51	76	0	0	23	0.78
36600681--36600711	15	2.1	15	93	0	53	77	0	0	22	0.77
36609713--36609741	9	3.0	10	90	10	51	58	0	20	20	1.39
36609829--36609867	6	6.5	6	93	0	60	58	0	25	15	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36616486--36616535	15	3.3	15	88	0	73	10	18	14	58	1.63
36623208--36623345	33	4.1	32	71	9	114	28	13	26	31	1.94
36623154--36623302	33	4.4	34	69	11	108	29	14	26	30	1.95
36623154--36623315	35	4.8	34	70	10	98	28	14	27	29	1.95
36623155--36623360	101	2.0	101	94	0	358	29	14	25	30	1.95
36624268--36624300	16	2.0	17	88	5	50	63	21	3	12	1.41
36637793--36637844	16	3.2	16	75	20	63	46	1	28	23	1.63
36637792--36637866	32	2.3	32	95	0	132	46	2	28	22	1.65
36642320--36642415	39	2.5	39	92	0	156	38	15	15	30	1.89
36644724--36644749	13	2.0	13	100	0	52	23	0	7	69	1.14
36645570--36645766	98	2.0	98	96	2	360	27	9	24	38	1.86
36657259--36657707	44	10.2	44	63	13	163	29	19	25	24	1.98
36657154--36657779	132	4.8	132	93	1	1041	30	19	26	23	1.98
36658393--36658435	18	2.4	18	80	7	52	20	2	4	72	1.14
36659799--36659995	98	2.0	98	93	2	333	30	9	22	37	1.86
36666275--36666323	23	2.1	23	96	0	89	26	2	22	48	1.61
36668124--36668196	19	4.0	18	77	11	69	32	0	2	64	1.08
36668138--36668181	9	4.6	10	83	8	56	25	0	4	70	1.06
36668130--36668169	18	2.2	19	91	8	66	30	0	2	67	1.04
36668126--36668196	28	2.6	27	78	14	90	33	0	2	63	1.09
36673345--36673482	25	5.5	24	68	16	77	18	25	21	34	1.96
36673453--36673608	73	2.1	73	91	2	260	21	21	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36677778--36677830	27	2.0	26	85	10	72	66	1	18	13	1.34
36678390--36678454	22	2.9	22	77	13	62	46	0	0	53	1.00
36678391--36678463	20	3.5	20	74	16	60	46	0	1	52	1.09
36686432--36686492	28	2.2	28	91	2	106	32	22	21	22	1.98
36686857--36687027	27	6.3	27	82	0	135	23	15	20	39	1.91
36686858--36687027	54	3.1	54	82	5	175	24	15	20	40	1.91
36686858--36687027	81	2.1	81	83	2	207	24	15	20	40	1.91
36690470--36690634	44	3.6	43	70	18	127	30	19	16	33	1.94
36690412--36690636	94	2.4	94	81	1	245	28	19	17	35	1.94
36703797--36703823	14	1.9	14	100	0	54	14	0	3	81	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170