genome.fa.s16.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  58  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16917455--16917833	75	5.0	75	80	2	348	36	24	12	26	1.91
16939876--16939909	17	2.0	18	88	11	54	41	0	11	47	1.40
16949059--16949414	125	2.8	125	95	0	622	30	31	14	23	1.94
16949921--16950031	51	2.2	52	83	4	154	31	16	7	45	1.74
16957760--16957794	12	2.9	12	82	0	52	54	11	0	34	1.37
16958075--16958112	19	2.1	19	90	9	62	57	0	0	42	0.98
16960340--16960485	44	3.5	44	72	19	157	47	4	2	46	1.33
16960332--16960496	82	2.0	82	100	0	330	46	4	2	46	1.37
16960686--16960790	36	2.8	36	85	8	131	26	23	25	23	2.00
16961524--16961738	96	2.2	95	87	4	315	39	17	1	42	1.58
16961734--16961775	8	5.4	8	85	5	50	52	28	0	19	1.46
16961734--16961775	15	2.7	16	81	3	50	52	28	0	19	1.46
16961823--16961920	40	2.4	41	81	6	112	21	27	27	23	1.99
16984507--16984557	20	2.5	20	87	0	75	35	17	33	13	1.89
16987827--16987856	9	3.3	9	100	0	60	50	0	20	30	1.49
16989411--16989454	19	2.3	19	84	7	54	59	0	4	36	1.18
16990488--16990535	14	3.4	14	88	5	69	22	0	29	47	1.51
16993326--16993471	41	3.6	41	95	0	247	29	23	21	24	1.99
16993339--16993512	82	2.1	82	80	4	190	29	22	24	24	1.99
16995538--16995597	30	2.0	31	90	3	95	41	0	38	20	1.52
16995811--16995847	9	4.1	9	92	0	65	29	10	13	45	1.77
16995901--16995931	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17001801--17002021	51	4.4	50	80	6	232	30	13	24	31	1.93
17001801--17001985	101	1.8	102	87	3	275	29	14	23	31	1.94
17001801--17002021	101	2.2	102	82	4	259	30	13	24	31	1.93
17005534--17005679	41	3.6	41	90	0	229	29	22	22	25	1.99
17022946--17022996	20	2.5	21	84	9	61	29	0	13	56	1.38
17026654--17026810	55	2.8	56	79	3	181	46	13	5	35	1.65
17027446--17027491	17	2.7	17	82	0	56	21	8	23	45	1.80
17035996--17036200	27	7.6	27	85	4	234	29	28	14	28	1.95
17035996--17036199	54	3.8	54	84	6	261	29	28	14	27	1.95
17037692--17037738	24	2.0	24	84	12	62	12	17	0	70	1.17
17040368--17040724	41	8.7	39	79	8	354	20	20	29	29	1.98
17040365--17040718	82	4.3	82	84	4	396	20	20	29	29	1.98
17041104--17041166	14	4.4	15	78	13	53	26	0	33	39	1.57
17041113--17041150	14	2.7	15	88	12	62	26	0	31	42	1.56
17041169--17041199	7	4.4	7	91	0	53	19	0	48	32	1.49
17041169--17041208	14	2.9	14	88	7	55	22	0	47	30	1.52
17041532--17041581	14	3.7	14	76	7	50	14	0	46	40	1.44
17041835--17041865	7	4.4	7	95	0	53	16	0	35	48	1.46
17043981--17044005	13	1.9	13	100	0	50	16	8	24	52	1.70
17044780--17044829	18	2.8	18	82	11	66	52	20	0	28	1.47
17044780--17044831	27	1.9	27	84	0	68	51	19	0	28	1.47
17044808--17044931	60	2.2	56	82	12	141	47	18	0	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17044818--17045106	56	4.7	60	75	17	179	45	19	1	33	1.58
17044756--17045040	134	2.2	131	90	7	438	47	18	1	32	1.56
17044939--17045485	56	10.1	56	79	11	597	43	19	1	35	1.62
17044939--17045507	273	2.1	261	83	7	720	43	18	1	35	1.62
17044939--17045531	9	64.7	9	66	19	189	43	18	2	35	1.62
17045279--17045486	100	2.1	98	87	5	305	42	19	1	35	1.63
17045363--17045499	58	2.4	58	84	7	174	43	20	2	33	1.64
17051038--17051078	21	2.0	21	85	0	55	41	19	34	4	1.73
17050972--17051155	87	2.1	86	85	2	242	42	17	27	11	1.85
17051499--17051740	43	5.6	43	89	0	349	25	18	31	24	1.97
17052314--17052356	18	2.4	18	84	0	59	23	0	6	69	1.12
17053354--17053391	18	2.1	18	95	0	67	47	10	5	36	1.61
17058555--17058608	13	4.2	13	75	15	51	18	3	1	75	1.03
17059964--17060006	20	2.2	20	91	0	68	27	11	30	30	1.92
17060325--17060377	16	3.3	15	76	19	52	11	1	11	75	1.13
17065927--17065997	25	2.9	24	81	8	72	56	0	2	40	1.14
17067157--17067214	25	2.3	26	80	19	70	55	0	12	32	1.37
17070113--17070144	13	2.5	13	89	0	55	65	0	6	28	1.16
17070134--17070171	18	2.1	19	90	9	62	42	0	5	52	1.24
17070267--17070314	24	2.0	24	84	8	62	35	0	6	58	1.23
17070604--17070700	48	2.0	48	100	0	194	36	10	16	37	1.83
17072784--17072856	25	2.8	26	83	4	94	32	16	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17072784--17072842	26	2.3	26	91	2	93	28	20	23	27	1.99
17074939--17074980	21	2.0	21	95	0	75	47	26	4	21	1.70
17077016--17077058	18	2.4	18	88	7	61	69	2	4	23	1.18
17079936--17079991	21	2.7	21	75	10	60	17	30	33	17	1.94
17080450--17080500	21	2.4	21	81	12	61	68	3	15	11	1.34
17091366--17091390	6	4.2	6	100	0	50	84	0	0	16	0.63
17093767--17093822	20	2.8	20	86	5	69	53	12	26	7	1.64
17093786--17093831	20	2.3	20	85	7	58	50	17	26	6	1.70
17099688--17099809	23	5.3	23	81	3	147	22	18	24	34	1.96
17106047--17106100	20	2.7	20	80	5	65	35	14	27	22	1.93
17108251--17108289	18	2.2	17	86	13	53	33	0	20	46	1.51
17108513--17108565	23	2.3	23	90	0	88	22	20	24	32	1.98
17110218--17110252	18	1.9	18	88	0	52	28	2	0	68	1.04
17112343--17112466	64	2.0	63	82	10	155	52	17	6	23	1.68
17113949--17113993	19	2.3	20	88	3	65	20	0	0	80	0.72
17113950--17114000	7	7.4	7	82	8	61	17	0	0	82	0.67
17113958--17114000	15	2.9	15	86	13	63	16	0	0	83	0.64
17113949--17114001	13	4.1	13	83	9	63	20	0	0	79	0.74
17113996--17114022	11	2.5	11	100	0	54	48	0	0	51	1.00
17114007--17114068	27	2.3	27	84	10	83	35	0	3	61	1.12
17117368--17117397	15	2.1	14	93	6	51	43	6	10	40	1.64
17122349--17122402	26	2.1	26	100	0	108	66	14	11	7	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17123015--17123247	41	5.7	41	88	0	340	23	27	20	27	1.99
17123645--17123705	31	2.0	31	90	6	97	60	0	1	37	1.07
17123645--17123778	11	12.9	11	69	18	74	60	0	2	36	1.12
17123645--17123789	40	3.5	41	87	9	197	61	0	2	35	1.11
17133899--17133937	19	2.0	20	90	5	62	5	15	0	79	0.90
17133867--17133928	26	2.4	26	88	0	97	3	20	0	75	0.94
17139232--17139308	28	2.9	27	78	7	77	48	1	2	48	1.23
17141378--17141473	49	2.0	49	81	4	113	26	22	13	37	1.91
17141734--17142107	193	1.9	193	89	2	574	39	24	6	29	1.81
17143065--17143234	14	12.1	14	79	2	171	32	22	12	32	1.92
17144089--17144118	15	2.1	15	93	6	53	33	0	0	66	0.92
17159602--17159831	50	4.5	50	81	3	235	26	20	30	23	1.98
17159602--17159844	100	2.4	101	83	4	281	26	19	30	23	1.98
17164005--17164035	15	2.1	15	93	0	53	35	6	16	41	1.74
17164992--17165106	44	2.6	44	85	0	149	29	23	20	26	1.98
17165127--17165229	51	2.0	51	80	0	116	26	25	19	29	1.99
17165191--17165265	36	2.1	36	89	0	114	29	21	21	28	1.98
17165127--17165889	138	5.8	135	73	9	676	28	24	17	30	1.97
17165141--17165316	87	2.0	87	80	0	199	28	22	19	28	1.98
17165275--17166008	123	5.7	123	72	12	560	28	24	16	30	1.96
17165137--17166008	261	3.3	261	88	0	1305	28	24	16	30	1.97
17165497--17165644	51	2.9	51	70	4	127	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17165572--17165711	72	1.9	72	82	0	172	26	27	12	32	1.93
17165638--17165752	51	2.3	51	82	0	140	29	22	14	33	1.94
17165717--17165788	36	2.0	36	86	0	99	29	19	20	30	1.97
17165680--17165839	87	1.8	87	82	2	205	28	21	16	33	1.95
17165869--17165911	21	2.1	21	86	4	61	23	30	6	39	1.81
17165888--17165998	51	2.2	52	83	1	143	31	27	13	27	1.94
17167332--17167370	5	7.8	5	83	11	53	0	17	0	82	0.68
17167332--17167371	11	3.9	11	78	15	50	0	17	0	82	0.67
17167337--17167391	21	2.7	20	83	13	67	5	16	0	78	0.93
17169056--17169094	3	13.0	3	83	0	51	61	2	5	30	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170