genome.fa.s16.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  127  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38751798--38751836	17	2.3	18	87	12	57	71	7	0	20	1.10
38752530--38752574	22	2.1	22	91	4	74	82	4	11	2	0.91
38752542--38752576	18	2.0	17	88	5	52	77	5	11	5	1.12
38753304--38753416	44	2.6	44	84	5	131	27	21	22	29	1.99
38753338--38753462	44	2.9	43	83	5	146	28	21	22	28	1.99
38753470--38753729	143	1.8	143	85	3	371	26	23	20	29	1.99
38763488--38763526	12	3.2	13	85	10	55	20	0	15	64	1.30
38790949--38790974	13	2.0	13	100	0	52	69	7	7	15	1.35
38813778--38813825	12	4.3	12	77	17	59	60	0	0	39	0.97
38813777--38813816	21	1.9	21	100	0	80	62	0	0	37	0.95
38813778--38813905	11	12.4	11	68	24	66	60	0	1	38	1.07
38813790--38813914	41	3.1	41	90	4	200	62	0	1	36	1.05
38813832--38813894	29	2.1	30	88	8	94	61	0	1	36	1.05
38813809--38813880	16	4.0	17	72	18	65	62	0	0	37	0.95
38813790--38813920	39	3.3	38	86	7	181	63	0	1	35	1.04
38815504--38815547	19	2.2	19	84	8	52	59	4	2	34	1.30
38816233--38816259	4	6.8	4	100	0	54	77	0	0	22	0.76
38827987--38828041	15	3.6	14	83	11	65	69	0	16	14	1.20
38829311--38829532	88	2.5	88	90	0	336	28	20	26	24	1.99
38829730--38830159	50	8.6	50	73	4	330	31	21	23	23	1.98
38829731--38830225	100	5.0	100	83	4	507	30	21	23	24	1.99
38829731--38830225	200	2.5	199	81	3	566	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38831572--38831600	13	2.1	14	93	6	51	37	3	0	58	1.15
38836266--38836338	9	8.1	9	73	11	51	47	0	26	26	1.52
38836269--38836320	18	2.9	18	94	0	86	48	0	26	25	1.52
38836275--38836358	18	4.7	18	80	5	91	47	0	27	25	1.52
38846883--38847036	77	2.0	77	100	0	308	33	22	14	29	1.93
38854083--38854238	84	1.9	84	82	10	203	30	28	17	23	1.97
38854083--38854239	43	3.7	43	74	13	164	29	28	17	23	1.97
38865467--38865596	43	3.1	43	59	24	96	38	30	8	22	1.84
38865426--38865658	82	2.8	82	98	0	448	36	29	9	24	1.88
38882228--38882272	23	1.9	23	82	13	56	26	4	4	64	1.32
38883087--38883202	40	2.9	41	84	5	157	30	21	25	22	1.99
38883298--38883553	41	6.2	41	77	8	218	21	18	26	32	1.97
38883475--38883551	40	1.9	40	82	15	97	23	20	20	35	1.96
38883735--38883888	7	21.7	7	75	9	116	20	0	32	47	1.50
38883735--38883888	14	10.9	14	78	8	141	20	0	32	47	1.50
38884136--38884173	14	2.7	15	88	12	62	26	0	31	42	1.56
38884168--38884256	21	4.3	21	78	15	87	25	0	33	40	1.56
38884211--38884291	7	12.0	7	75	15	73	20	0	38	40	1.53
38884211--38884291	34	2.4	33	78	13	87	20	0	38	40	1.53
38888295--38888350	27	2.1	27	83	6	69	26	8	1	62	1.35
38888557--38888764	43	4.8	43	83	3	231	23	16	29	30	1.96
38895118--38895209	28	3.3	26	73	18	69	41	6	17	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38896108--38896177	33	2.1	33	89	0	104	34	14	32	18	1.91
38896108--38896185	33	2.4	33	84	4	86	35	14	29	20	1.92
38897089--38897165	19	4.1	18	71	17	57	38	1	3	55	1.26
38897097--38897224	20	6.4	18	69	24	64	37	0	4	57	1.25
38897733--38897835	40	2.6	41	80	6	122	25	25	29	20	1.99
38897933--38898248	95	3.3	95	86	2	438	39	2	17	40	1.63
38898259--38898550	126	2.3	126	85	4	403	33	17	20	28	1.95
38901686--38901788	34	3.2	33	82	10	124	50	4	3	40	1.42
38901527--38901725	111	1.8	108	92	2	326	48	5	5	41	1.48
38901710--38901788	34	2.2	36	93	4	135	51	5	3	39	1.42
38902195--38902237	18	2.4	18	88	0	59	44	9	27	18	1.80
38904040--38904098	11	5.4	11	73	15	50	44	3	33	18	1.67
38904044--38904101	23	2.7	21	79	10	71	46	3	31	18	1.66
38912287--38912323	16	2.3	16	90	0	56	40	5	29	24	1.77
38912556--38912590	18	2.0	17	88	5	52	54	0	0	45	0.99
38916236--38916275	20	2.0	20	95	0	71	40	22	10	27	1.86
38924121--38924163	18	2.3	19	84	11	54	46	6	0	46	1.30
38926592--38926683	43	2.1	43	95	0	166	42	9	5	42	1.61
38926677--38926742	15	4.3	15	78	16	64	4	10	3	81	0.94
38927732--38927768	18	2.1	19	85	10	51	81	2	0	16	0.81
38927724--38927773	25	2.0	25	84	0	64	76	6	0	18	0.99
38934283--38934648	154	2.3	162	85	8	489	29	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38934399--38934862	46	10.9	42	70	13	202	28	20	18	32	1.96
38934496--38934781	129	2.2	130	88	3	416	28	19	18	32	1.96
38949766--38949968	100	2.0	101	99	0	399	23	25	17	34	1.96
38950438--38950483	16	2.8	17	80	6	58	43	19	2	34	1.63
38951487--38951599	33	3.4	33	77	10	90	28	2	46	23	1.66
38951732--38951836	51	2.1	51	92	0	174	26	10	28	34	1.90
38955693--38955740	16	2.9	16	93	3	78	37	0	22	39	1.55
38957133--38957282	36	3.9	36	78	16	165	29	20	12	38	1.89
38957169--38957323	46	3.6	45	78	16	193	29	21	12	36	1.90
38957083--38957323	82	3.0	82	92	2	389	29	21	13	36	1.91
38960754--38961405	300	2.2	298	82	6	782	40	10	13	35	1.79
38961359--38961402	18	2.3	19	85	14	56	61	0	6	31	1.22
38962612--38962666	28	2.0	28	82	13	69	58	7	0	34	1.26
38962638--38962681	23	1.9	23	81	9	54	54	9	0	36	1.32
38968457--38968502	24	1.9	24	86	0	65	21	30	17	30	1.96
38968649--38968739	24	3.8	24	85	1	101	20	28	20	29	1.98
38968649--38968754	24	4.3	25	83	5	92	20	28	21	29	1.98
38968649--38968741	49	1.9	48	84	2	123	20	29	21	29	1.98
38978491--38978635	41	3.5	41	81	0	182	22	15	30	31	1.95
38979231--38979257	14	1.9	14	100	0	54	55	7	0	37	1.28
38980658--38980798	40	3.5	40	91	0	219	28	21	19	30	1.98
38982612--38982647	15	2.5	15	90	4	56	25	0	38	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38982674--38982722	14	3.4	14	82	2	62	24	0	42	32	1.55
38982760--38982807	25	1.9	25	91	0	78	35	0	4	60	1.16
38982963--38983000	14	2.7	15	84	12	53	26	2	28	42	1.69
38982995--38983066	21	3.4	21	82	5	74	22	1	44	31	1.61
38983019--38983058	20	2.0	20	90	0	62	22	2	47	27	1.64
38987411--38987492	43	1.9	43	82	0	101	29	15	29	25	1.96
38995955--38996001	24	2.0	24	86	0	67	27	21	34	17	1.95
38998069--38998107	20	2.0	21	85	10	55	64	2	2	30	1.21
39004640--39004686	21	2.2	21	88	0	67	29	31	8	29	1.87
39008218--39008261	5	8.8	5	85	7	54	81	0	13	4	0.83
39008218--39008269	16	3.4	16	79	12	56	78	0	17	3	0.89
39008215--39008289	26	3.0	25	75	15	75	76	0	18	5	0.98
39011068--39011186	45	2.6	45	83	7	136	40	12	21	26	1.88
39011164--39011281	45	2.6	45	82	2	148	40	17	21	20	1.91
39014695--39014757	11	5.7	11	77	5	56	63	3	1	31	1.19
39015975--39016106	41	3.2	40	77	8	133	16	18	25	39	1.91
39016084--39016161	41	1.9	41	82	10	97	17	19	20	42	1.90
39020042--39020074	17	1.9	17	100	0	66	12	15	18	54	1.71
39020802--39020869	21	3.2	20	69	19	57	23	11	23	41	1.87
39020804--39020871	22	3.1	21	68	19	59	23	10	23	42	1.84
39021521--39021567	24	1.9	25	87	12	71	40	0	2	57	1.11
39021543--39021832	120	2.4	120	95	0	517	44	2	3	49	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39021664--39021697	18	1.9	18	88	5	52	47	2	0	50	1.16
39021983--39022069	43	2.0	45	84	8	117	37	25	4	32	1.76
39022960--39023010	18	2.8	18	85	5	59	45	5	1	47	1.38
39023220--39023268	21	2.4	20	86	6	71	67	0	4	28	1.09
39028632--39028660	6	4.8	6	100	0	58	51	0	31	17	1.45
39031890--39031985	48	2.0	49	82	12	117	44	7	16	31	1.75
39040440--39040528	29	3.1	29	63	15	76	25	15	10	48	1.77
39040440--39040555	57	2.0	57	100	0	232	24	15	8	51	1.71
39045800--39045858	31	1.9	31	86	6	84	49	10	0	40	1.37
39045977--39046038	32	1.9	32	96	0	115	37	17	12	32	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170