genome.fa.s16.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  37  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10308174--10308253	25	3.1	25	83	7	90	7	20	1	71	1.17
10308257--10308305	26	1.9	25	87	4	71	36	4	0	59	1.17
10312576--10312634	4	15.0	4	74	10	50	22	3	5	69	1.23
10312755--10313176	108	4.0	107	87	4	532	29	14	18	36	1.91
10312764--10313176	211	2.0	210	84	3	553	29	15	19	36	1.92
10313653--10313691	18	2.2	18	100	0	78	25	17	20	35	1.95
10325881--10325973	31	3.0	31	100	0	186	32	9	16	41	1.80
10327993--10328054	31	2.0	31	100	0	124	32	9	16	41	1.80
10329370--10329394	13	1.9	13	100	0	50	56	20	0	24	1.43
10330761--10330828	5	13.8	5	96	3	129	58	0	0	41	0.98
10340045--10340084	21	1.9	21	85	10	55	55	0	0	45	0.99
10354609--10354655	19	2.5	20	86	6	62	61	8	0	29	1.25
10361648--10361676	13	2.2	13	100	0	58	41	0	0	58	0.98
10361956--10362047	30	3.0	30	78	15	91	39	5	14	41	1.68
10361963--10362110	61	2.4	61	81	3	172	42	5	11	40	1.64
10364741--10364801	18	3.6	18	76	13	56	11	6	4	77	1.12
10365411--10365458	3	16.0	3	100	0	96	33	0	0	66	0.92
10365467--10365563	50	2.0	48	82	13	117	31	9	11	47	1.71
10365534--10365572	21	1.9	20	84	5	51	30	5	10	53	1.56
10366032--10366060	13	2.1	14	93	6	51	34	6	6	51	1.55
10371718--10371762	19	2.4	19	85	3	56	40	2	2	55	1.24
10371784--10371839	25	2.1	27	84	12	73	41	1	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10381861--10381899	20	2.0	21	85	10	55	10	12	0	76	1.01
10386305--10386385	26	3.2	26	62	28	66	37	0	27	35	1.57
10386309--10386406	49	2.0	49	100	0	196	34	0	24	40	1.55
10388757--10388787	16	1.9	16	93	0	53	35	0	64	0	0.94
10391764--10391793	2	15.0	2	100	0	60	50	0	0	50	1.00
10395872--10395914	22	2.0	20	86	8	59	41	4	20	32	1.73
10398999--10399035	17	2.1	18	90	5	58	29	2	0	67	1.04
10401855--10401890	4	8.8	4	87	6	54	72	0	2	25	0.98
10402261--10402369	31	3.6	29	76	14	78	57	5	2	33	1.36
10402604--10402679	15	5.1	15	76	19	54	60	2	2	34	1.24
10402597--10402640	18	2.4	18	79	20	56	61	4	0	34	1.16
10402660--10402686	14	1.9	14	100	0	54	62	7	0	29	1.22
10404110--10405025	44	20.9	43	63	9	157	23	26	24	25	2.00
10404097--10405025	88	10.6	88	87	2	1044	23	26	24	25	2.00
10411344--10411411	36	1.9	35	87	3	100	58	2	2	35	1.28
10411343--10411438	32	2.9	30	80	14	102	59	4	2	34	1.28
10416423--10416501	3	26.3	3	89	0	113	64	3	2	29	1.24
10416874--10416917	23	1.9	23	85	0	61	29	4	4	61	1.36
10420005--10420066	27	2.3	26	78	10	63	51	9	4	33	1.56
10420268--10420298	3	10.0	3	93	6	53	64	0	0	35	0.94
10421841--10421915	28	2.7	29	77	8	84	26	16	25	32	1.96
10431717--10431783	33	2.0	33	91	0	107	31	14	32	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10440266--10440339	19	3.8	19	79	17	73	75	0	5	18	0.99
10440266--10440350	11	7.4	11	68	21	50	75	0	5	18	1.00
10440275--10440353	25	3.0	27	83	12	110	74	0	5	20	1.00
10450567--10450621	27	2.0	28	85	3	76	38	21	25	14	1.92
10456882--10457320	220	2.0	221	95	0	799	36	10	20	31	1.88
10463363--10463448	24	3.6	24	87	0	118	23	16	26	33	1.95
10463655--10463765	53	2.1	53	94	0	195	23	18	13	45	1.84
10465610--10465651	21	2.0	21	95	0	75	54	0	7	38	1.28
10466457--10466481	13	1.9	13	100	0	50	52	48	0	0	1.00
10469075--10469110	15	2.4	15	100	0	72	75	0	13	11	1.06
10473641--10473857	107	2.0	107	100	0	434	28	17	17	37	1.92
10476046--10476080	18	2.0	17	88	5	52	45	0	0	54	0.99
10476034--10476350	157	2.0	157	98	0	607	47	5	3	44	1.41
10476203--10476237	18	2.0	17	88	5	52	45	0	0	54	0.99
10476035--10476273	75	3.1	75	64	18	200	46	3	3	46	1.35
10476383--10476492	45	2.6	44	80	8	122	31	28	4	35	1.77
10476471--10476540	16	4.4	16	94	0	104	34	34	0	31	1.58
10479312--10479336	6	4.2	6	100	0	50	52	0	32	16	1.44
10483970--10484103	23	5.8	23	81	0	151	44	24	16	14	1.84
10483969--10484105	69	2.0	70	88	1	204	43	24	16	15	1.86
10483970--10484103	46	2.9	46	82	1	169	44	24	16	14	1.84
10491720--10491758	6	6.3	6	82	5	51	61	0	23	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10494531--10494627	28	3.5	28	76	8	101	30	13	25	29	1.94
10495559--10495706	27	5.6	26	84	2	179	26	24	10	38	1.88
10495559--10495706	53	2.8	52	85	3	188	26	24	10	38	1.88
10496405--10496443	19	2.1	19	100	0	78	48	15	10	25	1.76
10503515--10503554	21	2.0	20	85	14	55	42	2	0	55	1.13
10505997--10506040	21	2.1	21	91	0	70	47	9	9	34	1.67
10513231--10513325	35	2.8	35	80	3	95	34	32	9	23	1.87
10514325--10514366	15	2.7	15	85	3	57	50	0	0	50	1.00
10514886--10514918	17	2.0	17	94	5	59	24	12	6	57	1.57
10523740--10523975	50	4.7	50	79	2	244	22	26	23	27	1.99
10542379--10542719	40	8.5	40	82	1	387	13	28	17	39	1.88
10542515--10542720	20	10.3	20	67	8	87	12	30	18	38	1.88
10542379--10542709	120	2.8	120	88	0	464	14	27	17	40	1.88
10559441--10559487	19	2.4	19	86	10	60	65	0	6	27	1.16
10561325--10561366	19	2.2	19	86	0	57	40	19	14	26	1.89
10565938--10565979	19	2.2	19	95	0	75	38	19	14	28	1.90
10566771--10566800	9	3.4	9	95	4	53	66	0	0	33	0.92
10572089--10572362	146	1.9	147	93	0	478	25	18	18	37	1.93
10583772--10583832	32	1.9	32	83	12	81	45	3	1	49	1.28
10588124--10588165	20	2.1	20	90	0	66	45	9	0	45	1.36
10588916--10589126	5	42.2	5	95	0	188	31	19	11	37	1.88
10589353--10589406	7	7.7	7	86	13	76	42	16	0	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10589464--10589494	14	2.2	14	94	0	53	45	9	0	45	1.36
10589637--10589855	49	4.5	49	82	1	215	32	29	19	18	1.96
10590397--10590456	31	1.9	31	86	0	84	73	5	16	5	1.19
10591039--10591092	28	2.0	27	85	7	74	48	3	0	48	1.19
10592915--10592980	30	2.2	30	83	2	80	25	9	18	46	1.78
10595421--10595476	18	3.1	18	76	0	67	42	25	7	25	1.80
10595421--10595508	36	2.4	36	88	0	122	43	21	6	28	1.78
10596439--10596475	6	6.5	6	87	6	51	13	0	2	83	0.74
10596439--10596478	16	2.5	17	88	8	57	12	0	2	85	0.71
10596443--10596483	22	1.9	21	90	5	64	9	2	2	85	0.78
10599449--10599502	23	2.4	22	77	20	58	37	5	0	57	1.22
10599453--10599519	32	2.1	31	83	8	82	38	5	0	55	1.25
10600028--10600083	25	2.2	25	83	0	76	50	1	5	42	1.35
10600669--10600713	23	1.9	24	86	13	67	48	4	0	46	1.22
10603079--10603367	126	2.3	126	94	0	499	31	19	20	29	1.97
10606646--10606743	51	1.9	51	87	4	144	44	2	26	26	1.65
10606707--10606760	22	2.5	22	87	3	83	46	1	27	24	1.63
10608096--10608121	5	5.2	5	100	0	52	19	0	80	0	0.71
10610165--10610361	66	3.0	66	93	0	322	27	17	30	24	1.97
10617325--10617578	87	2.9	87	87	2	357	36	22	14	25	1.93
10622497--10622592	41	2.3	40	82	7	113	35	20	15	28	1.93
10622513--10622593	41	2.0	41	87	0	117	35	19	14	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10622497--10622605	41	2.7	41	79	2	112	36	19	14	29	1.91
10626934--10626965	12	2.7	12	100	0	64	31	18	18	31	1.95
10628153--10628199	21	2.2	22	85	14	71	63	0	0	36	0.94
10629017--10629060	20	2.2	20	91	0	70	38	9	25	27	1.86
10630420--10630458	3	12.7	3	83	5	51	61	2	2	33	1.23
10630411--10630448	16	2.5	15	91	4	58	60	2	7	28	1.38
10630651--10630688	18	2.2	17	86	9	51	68	2	13	15	1.32
10632005--10632169	44	3.7	44	75	6	118	30	24	15	29	1.96
10632262--10632651	43	9.0	43	66	6	185	23	27	23	25	2.00
10632148--10632651	175	2.9	175	86	0	679	23	26	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170