genome.fa.s11.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  101  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31067376--31067532	46	3.4	45	77	5	145	55	3	1	39	1.26
31067827--31068234	209	2.0	208	90	1	638	22	22	18	36	1.95
31068327--31068492	78	2.1	78	86	2	226	28	16	30	24	1.96
31068326--31068611	39	7.3	39	72	3	155	27	17	30	24	1.97
31068444--31068609	78	2.1	77	80	6	174	28	18	29	22	1.98
31068349--31068609	117	2.2	117	84	1	326	28	18	28	24	1.98
31068466--31068614	78	1.9	78	87	0	217	26	19	29	24	1.98
31068833--31069931	98	11.2	98	86	1	1432	18	25	18	37	1.93
31068966--31069931	49	19.7	48	71	11	512	18	25	18	37	1.93
31068833--31069931	295	3.7	294	86	2	1463	18	25	18	37	1.93
31070833--31070878	17	2.6	18	86	6	67	0	19	2	78	0.86
31070833--31070878	9	5.1	9	77	17	51	0	19	2	78	0.86
31070839--31070891	15	3.5	14	76	16	52	1	16	1	79	0.92
31076042--31076667	59	10.6	59	83	6	704	34	3	26	35	1.74
31076042--31076667	117	5.3	118	84	6	672	34	3	26	35	1.74
31078305--31078392	34	2.6	34	78	10	90	53	5	1	39	1.32
31078320--31078380	17	3.6	16	76	10	59	49	8	1	40	1.42
31078301--31078392	6	16.0	6	65	13	50	52	5	1	41	1.32
31078340--31078393	28	1.9	28	88	0	81	55	5	0	38	1.23
31078334--31078392	17	3.4	16	80	19	66	52	6	0	40	1.28
31081364--31081393	15	1.9	16	93	6	53	80	0	13	6	0.91
31082221--31082278	23	2.5	23	82	0	71	34	27	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31083106--31083143	16	2.4	16	86	4	51	28	5	5	60	1.40
31083767--31083791	4	6.2	4	100	0	50	24	0	0	76	0.80
31084948--31085336	192	2.0	192	95	2	701	35	11	10	42	1.76
31093344--31093369	12	2.2	12	100	0	52	46	15	0	38	1.46
31098675--31098759	31	2.8	30	76	1	89	31	20	17	30	1.95
31102054--31102105	27	1.9	27	84	0	68	28	32	11	26	1.91
31118197--31118355	39	4.1	39	75	4	140	42	19	7	30	1.79
31118197--31118347	79	1.9	78	90	4	241	41	19	7	31	1.80
31124661--31125007	3	115.7	3	92	1	525	32	4	0	61	1.21
31127433--31127487	25	2.2	26	81	15	62	50	0	1	47	1.11
31127457--31127490	18	1.9	18	88	5	52	50	0	0	50	1.00
31128654--31128694	21	1.9	22	95	5	75	65	0	0	34	0.93
31128930--31128983	26	2.1	26	92	0	90	27	22	16	33	1.95
31134614--31134751	45	3.1	44	80	6	143	26	20	10	42	1.84
31138257--31138351	31	2.9	35	78	12	119	70	1	0	28	0.94
31138276--31138348	35	2.1	35	87	10	105	72	1	0	26	0.93
31138819--31138853	18	1.9	19	88	11	56	68	5	8	17	1.35
31138919--31138954	15	2.4	15	90	0	54	27	8	2	61	1.39
31142124--31142163	18	2.2	20	86	13	59	72	2	12	12	1.22
31149203--31149247	24	1.9	24	81	4	56	73	2	13	11	1.19
31152202--31152425	42	5.2	42	82	6	243	25	26	10	37	1.88
31152202--31152432	44	5.4	44	80	7	233	26	25	9	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31152236--31152426	86	2.2	88	80	9	232	24	25	11	38	1.89
31154506--31154589	42	2.0	42	95	0	150	33	28	14	23	1.94
31159747--31159971	44	5.3	44	79	5	212	23	24	11	40	1.87
31159751--31159971	85	2.6	87	80	6	222	23	23	11	41	1.87
31167144--31167174	16	1.9	16	93	0	53	22	16	0	61	1.34
31169978--31170089	38	3.0	36	81	5	100	33	23	13	30	1.93
31173246--31173299	21	2.6	21	88	5	74	31	25	11	31	1.91
31185835--31185876	15	2.7	15	85	3	57	64	0	35	0	0.94
31186949--31186991	22	2.0	22	86	9	61	79	0	18	2	0.85
31186962--31186999	12	3.2	12	89	10	53	78	0	21	0	0.74
31207337--31207389	12	4.2	12	75	13	52	1	35	0	62	1.06
31241763--31241793	14	2.2	14	100	0	62	32	16	19	32	1.94
31242915--31242951	15	2.4	16	82	17	51	51	5	10	32	1.60
31243770--31243995	42	5.4	43	77	10	209	39	11	23	26	1.88
31243782--31243900	37	3.1	38	80	9	125	38	14	21	25	1.91
31250936--31251117	42	4.3	42	84	6	240	37	9	25	26	1.87
31250929--31251117	86	2.2	85	85	3	254	38	9	24	27	1.86
31250936--31251162	42	5.4	42	83	6	210	37	9	25	28	1.87
31258237--31258285	23	2.1	23	100	0	98	38	8	18	34	1.80
31260288--31260337	12	4.3	12	77	22	54	2	18	0	80	0.82
31260282--31260337	18	3.2	16	85	10	58	3	16	0	80	0.85
31260289--31260337	10	4.9	10	79	20	50	2	18	0	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31260289--31260335	22	2.1	22	88	7	69	2	19	0	78	0.85
31272397--31272432	15	2.4	15	90	0	54	58	0	11	30	1.33
31272932--31272999	30	2.4	28	90	9	118	17	16	13	52	1.74
31273029--31273083	21	2.4	24	85	11	80	27	0	1	70	0.97
31274867--31274967	47	2.2	46	80	5	114	23	15	15	44	1.85
31276832--31276961	45	2.9	45	81	3	129	43	11	17	27	1.84
31280548--31280593	22	2.0	23	87	4	67	39	2	0	58	1.10
31283714--31283747	17	1.9	18	88	5	52	50	0	0	50	1.00
31284326--31284367	21	2.0	21	85	0	57	11	9	0	78	0.96
31307744--31307802	28	2.1	28	90	6	93	38	25	1	33	1.66
31308263--31308378	41	2.9	40	79	5	144	40	18	20	20	1.92
31308244--31308584	82	4.2	79	80	8	253	36	18	25	19	1.94
31308344--31308623	41	6.9	41	81	3	307	36	17	27	18	1.94
31308964--31309016	17	3.2	17	73	7	56	66	5	0	28	1.15
31310178--31310217	19	2.1	19	85	4	53	40	2	0	57	1.12
31312192--31312230	19	2.1	19	85	0	51	46	5	17	30	1.70
31312438--31312826	30	13.2	29	77	9	331	37	1	22	38	1.62
31312441--31312826	59	6.5	59	78	6	343	38	1	22	38	1.63
31312441--31312826	89	4.4	88	79	8	340	38	1	22	38	1.63
31312808--31312874	30	2.3	30	89	2	100	37	7	16	38	1.77
31312808--31312886	30	2.7	30	86	5	90	37	6	18	36	1.77
31314602--31314675	37	2.0	37	91	0	121	31	20	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31315027--31315372	160	2.2	161	92	3	572	23	23	17	35	1.95
31315475--31315569	39	2.4	39	89	0	145	29	18	24	27	1.98
31315607--31315892	41	7.0	41	89	2	450	27	19	20	32	1.97
31317097--31317176	6	12.2	6	74	17	61	5	13	0	81	0.85
31317109--31317176	14	5.0	14	82	7	77	5	11	0	82	0.83
31317109--31317176	20	3.4	20	82	6	84	5	11	0	82	0.83
31318078--31318110	17	1.9	17	88	11	50	3	18	0	78	0.87
31322381--31322476	30	3.1	30	76	5	86	35	4	22	37	1.74
31336972--31337013	18	2.3	18	88	12	59	14	33	9	42	1.78
31337989--31338072	20	3.7	23	83	13	102	51	2	1	45	1.22
31337967--31338072	46	2.3	47	83	6	126	51	3	0	43	1.26
31338220--31338258	6	6.5	6	100	0	78	53	15	0	30	1.42
31341222--31341458	52	4.6	52	85	2	316	26	14	24	34	1.94
31342192--31342243	21	2.5	21	96	0	95	21	9	32	36	1.86
31346317--31346587	136	2.0	136	95	0	488	24	29	16	29	1.96
31360168--31360344	43	4.1	43	88	2	248	26	20	25	27	1.99
31361933--31362084	80	1.9	78	85	5	207	30	9	19	40	1.82
31365359--31365460	51	2.0	52	90	5	163	37	15	24	22	1.93
31367836--31367863	13	2.2	13	100	0	56	60	0	0	39	0.97
31367899--31367955	20	2.8	20	75	2	69	75	7	7	10	1.19
31368890--31368929	20	2.0	20	85	9	55	42	17	2	37	1.63
31369233--31369289	29	2.0	29	82	0	69	31	3	8	56	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31372881--31372940	27	2.2	26	80	13	68	5	18	1	75	1.07
31374256--31374582	58	5.6	59	77	7	287	34	5	24	35	1.79
31374269--31374666	59	6.8	57	78	7	277	34	4	24	36	1.76
31374243--31374586	116	3.0	115	77	6	329	35	5	23	35	1.78
31374327--31374706	29	13.0	30	72	15	212	33	3	25	37	1.74
31374517--31374706	59	3.2	58	85	6	231	34	2	23	40	1.67
31376635--31376696	20	3.2	20	70	21	58	25	4	17	51	1.65
31377107--31378293	207	5.8	204	86	3	1473	22	23	18	34	1.96
31377107--31378293	413	2.9	400	84	3	1486	22	23	18	34	1.96
31378365--31378551	39	4.8	39	73	5	153	25	21	29	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143