genome.fa.s11.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  113  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34423134--34423186	27	2.0	27	92	0	88	26	18	18	35	1.95
34427809--34427873	13	5.0	13	77	7	69	36	6	20	36	1.77
34429028--34429110	20	4.2	20	77	9	80	25	0	26	48	1.52
34429912--34429953	17	2.3	19	88	8	61	69	2	2	26	1.13
34429912--34429966	20	2.9	19	82	12	53	65	1	1	30	1.13
34431919--34432098	54	3.3	54	97	1	335	23	20	36	18	1.95
34434938--34434971	17	2.0	17	88	0	50	61	2	0	35	1.11
34437786--34437877	40	2.3	40	85	9	125	56	11	8	22	1.62
34437976--34438017	22	2.0	22	95	4	77	50	14	9	26	1.73
34438866--34438988	38	3.3	37	75	18	119	56	5	8	30	1.52
34438879--34439008	38	3.4	38	76	12	122	60	5	6	27	1.45
34438866--34439061	77	2.6	76	83	7	229	57	7	7	27	1.54
34441865--34441913	25	1.9	25	84	12	64	34	0	0	65	0.93
34442460--34442523	26	2.3	26	82	12	67	60	1	1	35	1.15
34446692--34446734	20	2.1	21	83	12	54	39	0	4	55	1.20
34450373--34450404	12	2.7	12	90	0	55	21	0	9	68	1.17
34451365--34451511	8	16.5	8	75	17	66	59	4	1	34	1.25
34451365--34451465	18	5.8	16	72	21	53	59	3	1	34	1.27
34451864--34451908	22	2.2	20	88	8	63	80	2	2	15	0.92
34457455--34457526	36	1.9	39	86	8	105	51	11	15	22	1.74
34461655--34461690	19	1.9	19	88	5	56	36	0	8	55	1.30
34461659--34461696	18	2.0	20	85	10	53	39	0	7	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34471699--34471775	25	3.2	25	76	14	79	10	25	22	41	1.85
34471699--34471868	46	3.7	46	86	6	209	12	22	21	44	1.85
34471698--34471918	23	9.5	23	75	8	178	12	23	20	43	1.86
34474161--34474221	5	12.0	5	74	10	52	63	1	0	34	1.04
34474161--34474219	25	2.6	23	86	10	77	62	1	0	35	1.05
34480918--34480952	15	2.3	15	90	0	52	54	8	2	34	1.46
34484654--34484678	2	12.5	2	100	0	50	48	0	0	52	1.00
34488857--34488895	20	2.1	17	86	13	51	64	20	7	7	1.45
34501695--34501753	31	1.9	31	89	0	91	47	6	5	40	1.52
34503527--34503580	27	2.0	27	88	0	81	29	16	18	35	1.93
34514886--34515025	75	1.9	73	88	5	210	50	7	10	30	1.65
34522349--34522381	14	2.4	14	90	5	50	27	3	0	69	1.03
34524365--34524407	21	2.0	21	86	9	59	48	0	4	46	1.22
34524536--34524581	20	2.2	21	84	3	58	67	2	10	19	1.31
34531061--34531091	3	10.0	3	93	6	53	32	0	0	67	0.91
34535377--34535401	12	2.1	12	100	0	50	16	36	16	32	1.90
34539364--34539403	18	2.3	17	87	8	62	67	0	2	30	1.04
34539480--34539527	21	2.3	21	85	7	62	60	0	0	39	0.97
34546075--34546118	22	2.0	22	81	4	52	25	6	4	63	1.38
34547413--34547470	30	1.9	30	86	6	82	43	6	5	44	1.53
34550032--34550063	3	10.7	3	100	0	64	68	0	0	31	0.90
34567147--34567181	18	1.9	18	88	0	52	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34567863--34568012	63	2.4	63	82	2	176	25	11	32	30	1.91
34567959--34568129	63	2.7	63	79	5	184	26	8	32	33	1.86
34570424--34570466	19	2.4	19	80	7	54	9	30	2	58	1.42
34580429--34580489	24	2.5	24	86	5	79	39	16	11	32	1.84
34580583--34580635	24	2.3	23	83	3	61	50	13	13	22	1.75
34581129--34581171	9	4.7	9	82	5	50	60	0	2	37	1.10
34581129--34581169	10	4.3	10	84	9	50	63	0	2	34	1.08
34581129--34581211	19	4.6	18	80	15	82	60	2	1	36	1.18
34581129--34581211	18	4.5	19	78	18	70	60	2	1	36	1.18
34589844--34589921	31	2.5	31	89	4	104	51	2	3	42	1.34
34590890--34590968	34	2.4	33	85	6	97	22	15	8	53	1.69
34590847--34591041	93	2.1	92	81	7	229	24	14	12	47	1.80
34591594--34591655	30	2.1	30	93	0	106	24	1	14	59	1.44
34592187--34592245	20	2.9	20	85	7	75	8	5	18	67	1.35
34592242--34592337	35	2.7	35	84	7	106	11	6	12	69	1.35
34592251--34592310	26	2.4	25	83	8	68	11	5	13	70	1.33
34592274--34592339	12	5.6	12	81	3	71	10	6	12	71	1.31
34592271--34592353	35	2.4	33	77	13	96	12	4	12	71	1.30
34593242--34593266	5	5.0	5	100	0	50	60	0	0	40	0.97
34599859--34599917	29	2.0	30	90	3	93	32	3	13	50	1.58
34613096--34613190	49	1.9	49	93	0	163	36	27	21	14	1.92
34614772--34614812	15	2.7	15	88	3	55	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34614761--34614814	19	2.7	19	78	16	56	40	0	0	59	0.98
34617080--34617104	12	2.1	12	100	0	50	76	0	16	8	1.02
34626389--34626421	17	1.9	18	88	11	52	42	12	0	45	1.41
34640010--34640081	34	2.1	34	89	0	108	37	6	27	27	1.82
34647431--34647487	20	3.0	20	73	14	57	50	0	1	47	1.11
34651943--34651994	16	3.2	16	73	10	52	53	0	13	32	1.40
34652170--34652254	14	5.8	15	69	19	63	55	2	0	42	1.12
34652171--34652321	59	2.5	59	83	11	175	54	1	1	41	1.20
34655834--34655957	23	5.3	23	72	14	85	41	20	25	13	1.89
34655908--34655960	23	2.3	23	93	0	88	43	20	26	9	1.82
34669567--34669601	17	2.0	18	88	5	54	37	22	8	31	1.85
34670927--34670978	22	2.4	22	93	0	86	46	32	0	21	1.52
34670974--34671014	21	2.0	21	90	0	64	46	26	2	24	1.65
34671028--34671097	7	9.6	7	77	9	68	45	27	0	27	1.54
34670985--34671051	29	2.4	28	76	2	71	50	23	0	25	1.49
34671033--34671095	22	2.8	22	81	9	74	47	22	0	30	1.51
34671056--34671098	15	2.9	15	89	3	70	41	32	0	25	1.56
34672930--34672999	15	4.9	15	67	18	51	34	1	1	62	1.13
34672928--34672996	30	2.3	29	79	18	72	31	1	1	65	1.11
34680840--34680875	2	18.0	2	100	0	72	50	0	50	0	1.00
34682628--34682685	29	1.9	31	82	6	75	58	1	1	37	1.18
34696092--34696128	3	12.7	3	94	5	67	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34696680--34696729	17	3.1	16	73	18	50	46	0	2	52	1.12
34706778--34706847	30	2.3	29	78	7	77	48	2	2	45	1.32
34713324--34713368	19	2.3	20	85	14	60	13	8	15	62	1.54
34719867--34719946	17	4.7	17	80	0	88	45	1	5	48	1.32
34720994--34721180	57	3.2	58	81	5	209	36	22	4	35	1.74
34721028--34721426	29	13.7	29	72	14	232	34	25	4	36	1.75
34721071--34721427	58	6.1	59	79	9	303	34	25	4	35	1.76
34720996--34721401	88	4.6	86	78	11	303	34	25	4	35	1.76
34724378--34724439	29	2.1	31	85	11	85	62	1	4	30	1.25
34725161--34725233	19	3.6	19	70	23	60	58	5	0	35	1.21
34725156--34725241	10	8.7	9	71	17	55	61	5	0	32	1.20
34726163--34726191	13	2.2	13	100	0	58	34	17	0	48	1.47
34742381--34742419	21	1.9	20	89	5	60	43	10	25	20	1.83
34749121--34749205	28	3.0	28	94	0	143	38	11	9	40	1.74
34749532--34749597	29	2.2	29	81	10	71	36	4	0	59	1.18
34750484--34750519	2	18.0	2	94	0	63	47	0	0	52	1.00
34751551--34751671	59	2.1	59	90	4	192	47	20	0	31	1.50
34756597--34756631	12	2.8	12	86	4	52	71	0	0	28	0.86
34757883--34757921	15	2.6	14	80	11	51	28	0	12	58	1.34
34767298--34767334	17	2.2	17	90	0	56	86	5	0	8	0.70
34773169--34773194	2	13.0	2	100	0	52	0	50	0	50	1.00
34775157--34775183	4	6.8	4	100	0	54	25	0	25	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34775844--34775882	17	2.4	17	86	4	53	56	2	5	35	1.35
34776361--34776406	16	2.8	17	83	9	51	52	2	0	45	1.13
34776363--34776406	17	2.5	17	82	10	54	50	2	0	47	1.13
34782679--34782721	19	2.3	18	80	4	50	41	0	6	51	1.29
34785105--34785129	4	6.2	4	100	0	50	76	0	0	24	0.80
34785109--34785164	22	2.4	24	79	5	62	67	1	7	23	1.24
34788410--34788511	52	2.0	52	100	0	204	27	33	6	32	1.83
34791260--34791715	59	7.7	59	89	0	691	32	27	4	35	1.77
34803616--34804301	68	10.0	68	93	0	1084	33	17	21	26	1.96
34803616--34804301	273	2.5	273	94	0	1185	33	17	21	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143