genome.fa.s11.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  62  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19939917--19939955	20	2.0	20	89	0	60	20	23	23	33	1.97
19954152--19954179	7	4.0	7	100	0	56	42	42	0	14	1.45
19962774--19962830	3	19.0	3	75	13	55	68	1	29	0	1.00
19962772--19962830	21	2.6	23	81	7	68	66	3	30	0	1.08
19962774--19962830	18	3.2	17	82	7	69	68	1	29	0	1.00
19965437--19965483	24	2.0	24	87	8	69	27	17	8	46	1.76
19972876--19972923	24	1.9	26	83	8	64	43	16	20	18	1.88
19989775--19989880	37	2.8	37	82	1	122	28	30	18	22	1.98
19989972--19990025	26	2.1	26	92	0	90	29	20	22	27	1.98
19999204--19999276	18	4.1	18	78	7	78	17	15	13	53	1.73
19999828--19999865	10	3.7	10	86	6	58	81	0	18	0	0.69
19999828--19999870	15	2.7	15	80	20	52	81	0	18	0	0.69
19999829--19999874	21	2.1	22	88	11	69	80	0	19	0	0.71
20014181--20014233	21	2.5	21	82	11	65	32	22	13	32	1.92
20020443--20020475	17	1.9	17	93	0	57	45	9	27	18	1.79
20024377--20024416	4	10.0	4	100	0	80	0	0	25	75	0.81
20024953--20024990	20	1.9	20	88	0	58	71	0	7	21	1.11
20040773--20040807	16	2.2	16	90	10	54	31	25	5	37	1.80
20041260--20041298	20	2.0	20	84	0	51	30	12	30	25	1.93
20042215--20042277	24	2.6	24	89	0	99	50	11	14	23	1.74
20044181--20044263	24	3.5	24	78	6	69	51	8	10	28	1.66
20044197--20044267	24	3.0	24	80	0	79	56	5	9	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20069768--20069798	9	3.3	9	95	4	53	58	0	0	41	0.98
20069875--20069950	37	2.1	36	85	11	102	40	1	2	55	1.22
20069875--20069950	12	6.8	11	72	19	52	40	1	2	55	1.22
20072710--20072744	18	1.9	18	88	0	52	51	8	34	5	1.56
20073432--20073714	143	2.0	143	99	0	557	32	14	22	29	1.94
20076249--20076287	14	2.7	14	84	4	51	17	12	5	64	1.46
20077668--20077708	18	2.1	21	82	13	52	41	2	2	53	1.27
20077668--20077728	21	2.8	22	79	18	56	44	3	1	50	1.28
20078869--20079099	42	5.5	42	82	1	241	38	20	18	22	1.93
20078992--20079100	20	5.4	20	64	5	67	37	20	18	23	1.94
20078827--20079109	42	6.8	42	81	1	138	38	19	18	24	1.93
20080366--20080474	51	2.1	51	87	0	155	28	12	29	29	1.93
20086510--20086660	20	7.6	20	74	3	108	11	24	22	41	1.87
20087650--20087701	23	2.3	23	83	6	61	55	7	13	23	1.63
20087726--20087794	23	3.1	22	82	10	79	59	26	5	8	1.50
20087788--20087828	11	3.6	11	80	6	55	46	26	12	14	1.80
20087758--20087833	23	3.3	23	87	3	100	52	25	11	10	1.69
20087789--20087855	23	2.9	23	88	0	89	47	28	11	11	1.76
20090123--20090173	6	8.0	6	76	20	50	60	3	1	33	1.26
20090124--20090173	25	1.9	25	84	15	66	60	4	2	34	1.27
20112005--20112058	25	2.2	25	86	3	74	11	27	16	44	1.82
20111987--20112058	25	2.9	24	81	6	72	12	27	19	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20152409--20152447	21	1.9	21	89	5	62	12	12	7	66	1.43
20162162--20162203	2	21.0	2	100	0	84	50	0	0	50	1.00
20166779--20166965	52	3.6	52	92	0	320	26	16	24	33	1.95
20170192--20170347	58	2.6	58	86	6	215	23	15	10	50	1.76
20170586--20170658	32	2.2	33	86	13	107	53	8	13	24	1.67
20170630--20170683	28	2.0	27	85	10	74	55	7	12	24	1.63
20171247--20171321	17	4.4	17	70	13	55	20	29	2	48	1.63
20171749--20171787	19	2.0	20	85	5	53	33	10	7	48	1.66
20176557--20176615	17	3.5	17	77	9	75	18	40	0	40	1.51
20176545--20176614	34	2.1	34	94	0	122	17	41	1	40	1.58
20177000--20177042	21	2.0	21	90	0	68	58	2	6	32	1.38
20177747--20177818	24	3.0	23	88	6	108	26	16	13	43	1.86
20178157--20178220	22	3.0	20	73	13	65	50	0	0	50	1.00
20178175--20178226	11	4.9	11	79	9	63	48	1	0	50	1.12
20178157--20178226	20	3.4	20	81	14	72	47	1	0	51	1.09
20181931--20181986	27	2.1	27	82	0	67	46	0	3	50	1.19
20182097--20182131	9	3.5	10	88	11	54	68	0	0	31	0.90
20182105--20182145	17	2.3	18	87	8	57	70	0	2	26	0.99
20182157--20182363	86	2.3	86	77	9	209	29	8	8	53	1.61
20182210--20182375	86	1.9	91	83	7	227	31	6	6	56	1.50
20182564--20182595	7	4.6	7	96	0	55	25	0	0	75	0.81
20182591--20182626	18	2.0	18	88	0	54	41	0	5	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20186561--20186611	22	2.3	22	93	0	84	47	11	5	35	1.65
20189583--20189638	26	2.2	24	76	14	58	44	0	3	51	1.18
20191336--20191382	11	4.9	9	82	15	51	23	0	2	74	0.93
20193342--20193374	17	1.9	17	93	0	57	12	9	3	75	1.14
20193349--20193395	21	2.2	21	85	7	60	19	8	2	70	1.24
20203767--20203801	18	1.9	18	94	0	61	34	22	20	22	1.97
20212287--20212315	14	2.1	14	100	0	58	27	20	31	20	1.98
20217348--20217400	12	4.4	12	77	15	56	60	0	39	0	0.97
20217355--20217394	15	2.7	15	84	0	53	65	0	35	0	0.93
20231032--20231063	17	1.9	17	93	6	57	12	12	15	59	1.61
20233873--20233897	12	2.1	12	100	0	50	72	0	28	0	0.86
20244251--20244284	18	1.9	17	88	5	50	23	11	8	55	1.63
20244461--20244523	27	2.3	27	94	0	108	38	26	19	15	1.92
20259385--20259418	18	1.9	17	88	5	50	23	11	8	55	1.63
20259593--20259657	27	2.4	27	86	0	94	35	26	23	15	1.94
20275393--20275432	18	2.3	18	86	4	55	20	17	10	52	1.72
20278650--20278688	20	1.9	21	89	5	62	58	2	35	2	1.25
20303431--20303469	21	1.9	21	89	5	62	25	17	15	41	1.89
20312291--20312882	298	2.0	298	97	0	1130	40	15	17	27	1.89
20324092--20324142	24	2.3	21	86	10	66	68	0	31	0	0.90
20324524--20324572	20	2.4	20	86	10	64	14	14	10	61	1.57
20326464--20326488	12	2.1	12	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20327267--20327291	12	2.1	12	100	0	50	32	24	0	44	1.54
20330456--20330505	18	2.8	18	78	3	57	22	8	8	62	1.49
20333146--20333232	45	1.9	46	95	2	158	32	20	13	33	1.92
20334082--20334217	40	3.4	40	82	0	164	23	20	19	36	1.95
20345054--20345096	22	1.9	23	85	4	61	46	2	9	41	1.48
20345091--20345593	149	3.4	147	87	5	656	42	2	9	46	1.48
20346641--20347122	241	2.0	237	88	2	714	38	6	13	41	1.70
20350428--20350473	4	11.5	4	85	0	56	23	28	4	43	1.73
20355582--20355854	42	6.5	42	84	0	330	20	18	26	35	1.95
20356223--20356279	3	19.0	3	88	0	60	31	10	0	57	1.32
20356841--20357344	151	3.4	150	84	6	657	43	2	8	45	1.48
20357132--20357176	19	2.3	20	88	3	65	42	0	6	51	1.28
20358392--20358869	240	2.0	238	91	3	773	35	7	14	42	1.74
20361294--20361417	62	2.0	62	95	0	221	16	20	22	40	1.91
20368342--20368514	74	2.4	74	95	1	303	39	2	17	40	1.63
20368860--20368939	20	4.0	19	73	14	54	50	16	5	28	1.66
20369209--20369475	135	2.0	135	98	0	516	34	20	13	31	1.91
20373251--20373282	16	1.9	17	93	6	57	59	0	0	40	0.97
20377953--20379565	806	2.0	807	99	0	3219	39	6	16	37	1.75
20380249--20380344	29	3.3	29	92	0	156	48	8	4	38	1.52
20385548--20385609	31	2.0	31	100	0	124	45	16	16	22	1.85
20385766--20385910	29	5.3	29	79	15	148	48	6	3	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20386491--20386536	25	1.9	23	86	8	65	32	4	6	56	1.45
20395373--20395440	33	2.1	33	82	0	82	35	25	14	25	1.94
20397353--20397444	26	3.7	25	72	12	73	27	11	27	33	1.92
20401949--20402002	23	2.3	23	100	0	108	14	0	48	37	1.45
20405230--20405374	29	5.0	28	81	6	130	35	15	6	42	1.73
20405243--20405387	59	2.5	59	89	4	213	35	17	4	42	1.70
20405362--20405428	30	2.2	30	91	0	107	29	25	11	32	1.92
20406606--20406669	21	3.3	21	68	20	66	29	3	18	48	1.64
20408784--20408811	8	3.5	8	100	0	56	25	0	10	64	1.26
20409166--20409240	24	3.1	24	90	0	114	57	8	9	25	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143