genome.fa.s11.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  140  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41664277--41664394	27	4.6	27	74	14	106	26	6	43	23	1.79
41664240--41664394	75	2.0	77	88	6	235	28	6	43	21	1.77
41664380--41664537	75	2.1	76	78	3	167	24	3	50	20	1.65
41664450--41664508	27	2.2	27	87	0	82	22	5	47	25	1.71
41664304--41664484	48	3.8	48	87	0	254	25	5	46	22	1.73
41664456--41664516	27	2.1	27	82	8	68	22	4	49	22	1.69
41664132--41665180	171	6.1	171	78	7	992	26	4	47	21	1.69
41664477--41664685	48	4.4	48	82	2	231	25	2	49	21	1.63
41664402--41664778	75	5.1	75	72	11	267	25	3	48	21	1.68
41664478--41664685	96	2.2	96	83	0	263	25	2	49	21	1.63
41664369--41664592	123	1.8	123	86	0	322	26	4	46	22	1.69
41664375--41664619	123	2.0	122	81	1	285	26	3	48	20	1.66
41664513--41664706	96	2.0	96	84	4	248	26	2	49	21	1.62
41664699--41664795	48	2.0	48	93	0	167	25	4	49	20	1.67
41664744--41664901	75	2.1	75	84	2	210	27	5	46	21	1.72
41664817--41665008	102	1.9	102	84	0	258	24	4	50	20	1.68
41664817--41665866	48	21.2	53	69	19	303	26	4	48	20	1.67
41664576--41664922	123	2.8	123	91	0	559	27	4	47	21	1.68
41664967--41665036	30	2.5	27	76	13	68	22	4	48	24	1.68
41664921--41665068	78	1.9	78	88	0	224	22	3	50	23	1.64
41665029--41665105	21	3.5	21	70	16	66	24	1	54	19	1.52
41665002--41665083	27	3.3	27	65	19	77	26	2	50	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41664936--41665090	78	2.0	78	81	0	184	25	3	49	21	1.65
41665092--41665180	27	3.5	27	67	17	82	23	5	50	20	1.69
41665186--41665272	27	3.4	27	69	18	87	26	3	47	22	1.67
41664998--41665923	48	19.5	48	82	4	984	26	3	48	20	1.67
41665894--41665972	33	2.4	33	86	0	104	25	2	46	25	1.65
41665935--41666018	27	2.9	30	70	10	84	27	2	44	26	1.67
41669426--41669934	48	10.6	48	86	0	640	24	4	50	20	1.68
41679118--41679152	2	17.5	2	100	0	70	51	0	0	48	1.00
41681859--41681937	31	2.6	29	77	13	79	45	11	5	37	1.62
41684781--41684851	24	3.0	25	87	8	103	25	12	5	56	1.58
41689192--41689265	24	3.1	24	96	0	130	24	12	9	54	1.67
41692899--41692946	9	5.2	9	77	22	55	43	0	0	56	0.99
41692899--41692957	20	3.1	20	80	9	70	45	1	0	52	1.10
41692986--41693151	77	2.2	77	95	0	296	30	21	21	26	1.99
41700913--41701034	46	2.6	47	83	5	158	51	6	6	35	1.54
41701163--41701230	31	2.2	31	94	0	118	47	17	0	35	1.48
41701337--41701407	27	2.6	27	97	0	133	26	35	11	26	1.90
41704388--41704898	271	1.9	266	85	7	708	28	14	13	43	1.82
41707614--41707764	38	4.0	38	93	0	266	31	22	7	37	1.83
41715910--41715949	3	13.3	3	100	0	80	32	0	67	0	0.91
41716865--41717012	74	2.0	74	97	0	278	41	7	19	31	1.79
41723013--41723060	19	2.4	19	89	6	69	62	4	0	33	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41732207--41732233	7	3.9	7	100	0	54	14	25	29	29	1.95
41746172--41746210	15	2.5	16	87	4	62	35	2	0	61	1.10
41747370--41747561	106	1.8	106	81	4	244	20	18	14	45	1.85
41748563--41748635	30	2.5	28	79	14	83	42	2	12	42	1.56
41750204--41750231	12	2.3	12	100	0	56	25	7	42	25	1.80
41752035--41752091	30	1.9	29	85	3	78	64	5	5	24	1.35
41754750--41754795	2	23.0	2	100	0	92	50	0	0	50	1.00
41755164--41755189	2	13.0	2	100	0	52	50	0	0	50	1.00
41769352--41769386	2	17.5	2	100	0	70	51	0	48	0	1.00
41771714--41771780	26	2.6	27	85	7	93	47	10	11	29	1.74
41772460--41772540	32	2.5	33	80	4	94	45	17	3	33	1.66
41772502--41772588	28	3.0	29	78	13	97	44	20	3	31	1.68
41774441--41774475	15	2.2	16	90	5	54	40	0	0	60	0.97
41774452--41774509	24	2.4	23	82	8	62	34	5	1	58	1.30
41796786--41796861	23	3.3	23	88	0	98	13	27	17	42	1.86
41796878--41796930	23	2.3	23	90	3	81	13	24	28	33	1.93
41800317--41800375	18	3.3	17	74	9	55	50	0	1	47	1.11
41800332--41800383	15	3.3	15	75	8	50	55	0	0	44	0.99
41809811--41809865	30	2.0	28	82	13	69	36	0	5	58	1.21
41812728--41812962	79	3.0	79	97	0	436	28	11	14	44	1.81
41815877--41815930	2	27.0	2	100	0	108	50	0	0	50	1.00
41819544--41819583	20	2.0	20	85	0	53	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41825679--41825738	29	2.0	30	87	3	86	50	15	6	28	1.69
41826572--41826620	19	2.4	20	80	10	55	10	4	14	71	1.27
41826603--41826698	31	3.1	31	86	5	140	16	5	19	58	1.57
41827209--41827367	76	2.1	76	92	0	264	22	16	18	42	1.88
41840837--41840883	22	2.1	22	81	14	53	68	0	0	31	0.90
41847107--41847140	2	17.0	2	100	0	68	50	0	0	50	1.00
41849028--41849096	34	2.0	35	91	2	113	50	17	2	28	1.60
41858462--41858523	29	2.1	29	84	6	79	45	9	3	41	1.53
41865438--41865467	15	2.0	15	93	0	51	26	23	13	36	1.92
41874113--41874160	6	8.0	6	90	0	78	37	29	16	16	1.91
41879744--41879768	2	12.5	2	100	0	50	52	0	0	48	1.00
41881723--41881760	16	2.2	18	86	9	53	44	2	2	50	1.30
41882821--41882874	19	2.8	20	73	21	51	66	3	0	29	1.09
41897338--41897379	21	2.0	20	95	4	75	52	9	2	35	1.47
41899452--41899498	3	15.7	3	100	0	94	34	31	0	34	1.58
41905449--41905866	157	2.7	157	87	1	543	37	14	21	26	1.92
41907823--41907890	31	2.2	31	83	0	82	45	10	13	30	1.76
41908358--41908392	9	4.0	9	88	7	54	51	2	0	45	1.16
41908992--41909037	21	2.2	21	88	0	65	30	0	2	67	1.03
41911129--41911194	29	2.2	31	81	10	75	33	10	15	40	1.81
41924211--41924261	26	1.9	27	92	4	86	49	15	15	19	1.80
41928167--41928201	18	1.9	18	88	0	52	31	5	2	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41945931--41946001	30	2.2	32	80	14	85	49	2	1	46	1.25
41948203--41948254	21	2.4	21	77	22	63	42	1	0	55	1.10
41950884--41950911	2	14.0	2	100	0	56	50	0	0	50	1.00
41954030--41954070	19	2.2	18	86	4	55	70	12	0	17	1.16
41954062--41954102	19	2.2	19	90	0	64	60	17	2	19	1.46
41957064--41957110	23	2.0	23	84	8	60	42	10	14	31	1.80
41957469--41957554	43	2.0	43	95	0	154	41	11	13	32	1.81
41958048--41958099	27	2.0	25	85	10	70	28	15	5	50	1.67
41958242--41958433	31	6.4	30	70	14	130	45	13	17	23	1.83
41958242--41958433	89	2.1	89	85	4	253	45	13	17	23	1.83
41958477--41958525	17	2.8	17	78	3	53	42	6	4	46	1.47
41964766--41964797	16	2.0	17	88	11	50	65	3	18	12	1.38
41969363--41969400	19	2.0	19	85	10	51	50	2	5	42	1.39
41969688--41969733	22	2.1	22	91	0	74	67	4	0	28	1.10
41974496--41974565	36	1.9	36	100	0	140	30	27	22	20	1.98
41982273--41982323	15	3.4	14	79	15	57	58	0	7	33	1.27
41985459--41985493	15	2.2	16	90	5	54	62	20	0	17	1.32
41987320--41987366	2	23.5	2	100	0	94	51	0	48	0	1.00
41992405--41992429	2	12.5	2	100	0	50	52	0	0	48	1.00
42001548--42001608	24	2.5	24	86	0	77	27	11	8	52	1.66
42003538--42003600	24	2.6	24	89	0	99	25	12	9	52	1.69
42004677--42004761	31	2.7	31	76	7	91	30	9	11	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42020712--42020767	2	28.0	2	96	0	103	48	0	1	50	1.11
42022927--42023018	41	2.2	42	86	5	132	48	3	7	40	1.48
42024509--42024536	12	2.3	12	100	0	56	42	21	0	35	1.53
42026859--42026918	23	2.4	24	83	10	68	43	5	3	48	1.41
42027533--42027720	60	3.1	60	83	3	220	49	11	14	24	1.76
42027876--42027938	28	2.2	28	81	13	76	50	4	1	42	1.32
42029654--42029774	62	2.0	60	81	8	136	47	1	2	48	1.25
42070502--42070611	58	1.9	58	83	3	141	27	5	12	54	1.60
42070875--42070945	35	2.0	37	88	5	110	33	12	12	40	1.81
42076022--42076070	24	2.1	23	85	11	64	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143