genome.fa.s11.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  54  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17475736--17475766	14	2.1	15	94	5	55	77	0	22	0	0.77
17483272--17483337	31	2.1	31	91	0	105	31	12	7	48	1.68
17485132--17485187	27	2.1	27	86	0	76	35	8	16	39	1.80
17486490--17486572	43	1.9	43	85	4	114	33	10	22	32	1.89
17492214--17492301	9	10.6	9	67	24	59	50	0	0	50	1.00
17492206--17492310	20	5.6	20	67	25	77	49	0	0	50	1.00
17492214--17492308	36	2.6	36	86	3	136	48	0	0	51	1.00
17492371--17492476	46	2.3	47	96	1	196	35	7	15	41	1.75
17498389--17498426	20	1.9	20	88	0	58	23	10	7	57	1.58
17506755--17506807	19	2.8	18	81	13	54	77	11	9	1	1.07
17518376--17518540	83	2.0	82	93	1	285	30	24	18	25	1.98
17528655--17528818	83	2.0	83	93	0	283	31	22	18	27	1.97
17535189--17535254	17	3.9	17	78	4	62	51	13	16	18	1.76
17535189--17535254	34	1.9	34	82	17	84	51	13	16	18	1.76
17540307--17543666	215	15.5	216	81	5	3439	40	14	16	28	1.88
17540307--17543666	431	7.7	431	82	5	3474	40	14	16	28	1.88
17542400--17542425	9	2.9	9	100	0	52	34	7	23	34	1.83
17543342--17544014	334	2.0	334	80	5	763	40	13	16	28	1.87
17543127--17544215	549	2.0	549	81	4	1302	41	14	16	28	1.87
17543676--17545296	216	7.5	216	83	3	1833	40	13	16	29	1.87
17543676--17545296	648	2.5	645	84	4	2038	40	13	16	29	1.87
17547559--17547622	30	2.1	30	100	0	128	35	9	18	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17550471--17550506	16	2.3	15	95	4	63	19	2	5	72	1.17
17550690--17551538	296	2.9	296	97	0	1619	29	20	15	35	1.93
17552883--17552907	13	1.9	13	100	0	50	40	8	20	32	1.81
17567458--17567523	31	2.1	31	91	0	105	31	12	7	48	1.68
17569298--17569353	27	2.1	27	89	0	85	35	10	16	37	1.83
17570638--17570720	43	1.9	43	82	4	105	32	9	25	32	1.88
17571326--17571352	13	2.1	13	100	0	54	7	14	7	70	1.32
17575690--17575752	30	2.2	27	86	8	81	55	12	6	25	1.60
17576454--17576522	21	3.5	21	67	15	65	43	0	1	55	1.08
17576444--17576525	38	2.1	39	88	2	130	46	0	1	52	1.08
17577293--17577324	9	3.6	9	100	0	64	43	0	0	56	0.99
17583589--17583634	24	1.9	24	86	8	67	17	8	2	71	1.21
17591053--17591107	20	2.8	19	79	20	60	76	12	9	1	1.10
17591053--17591107	18	2.9	19	82	17	62	76	12	9	1	1.10
17599469--17599632	83	2.0	83	93	0	283	31	22	18	27	1.97
17606006--17606052	17	2.8	17	86	0	67	53	14	14	17	1.74
17606006--17606061	17	3.3	16	80	9	51	51	12	14	21	1.74
17611175--17614743	216	16.6	214	80	5	3513	40	14	16	27	1.88
17611175--17614743	431	8.3	429	81	5	3545	40	14	16	27	1.88
17611175--17614743	647	5.5	645	81	5	3779	40	14	16	27	1.88
17614408--17615080	333	2.0	335	81	4	786	40	14	16	28	1.87
17614743--17616393	216	7.7	216	81	7	1730	40	14	16	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17614743--17616387	419	3.8	423	81	6	1688	40	14	16	29	1.87
17614743--17616393	635	2.6	638	83	4	1951	40	14	16	29	1.87
17617569--17617601	11	3.1	11	82	8	50	60	6	12	21	1.53
17618153--17618252	22	4.5	22	85	2	128	16	22	24	38	1.93
17618153--17618239	45	1.9	45	88	4	131	16	21	24	37	1.93
17618922--17620317	216	6.4	216	81	5	1426	41	14	16	27	1.88
17620139--17620499	180	2.0	181	81	6	430	40	13	16	30	1.86
17619953--17620697	383	1.9	390	79	7	843	41	13	17	28	1.87
17619718--17620835	599	1.8	602	82	6	1418	40	13	16	28	1.87
17620509--17624869	216	19.9	216	74	10	2936	40	14	17	28	1.88
17622585--17624869	649	3.5	646	83	3	2752	40	14	17	28	1.88
17626558--17626877	176	1.8	176	86	1	462	38	13	17	30	1.88
17626720--17627271	216	2.6	216	85	3	700	39	15	17	27	1.89
17628364--17628403	19	2.1	19	95	0	71	17	12	20	50	1.78
17629719--17630631	216	4.2	216	85	3	1082	42	14	17	25	1.88
17629719--17630617	436	2.1	433	84	3	1137	42	15	17	24	1.88
17640422--17640474	18	2.7	19	77	16	56	24	3	18	52	1.62
17643066--17643091	7	3.7	7	100	0	52	42	0	0	57	0.98
17643069--17643161	6	16.0	6	75	9	52	41	1	4	52	1.28
17643083--17643116	15	2.2	15	89	5	50	38	2	0	58	1.13
17643081--17643147	17	4.1	17	73	5	57	38	1	4	55	1.29
17644958--17645213	30	8.7	29	76	12	157	37	25	2	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17644958--17645315	59	6.1	60	75	11	235	37	25	2	34	1.68
17645034--17645304	29	9.2	29	79	7	244	36	26	2	33	1.69
17645017--17645347	29	11.2	28	77	10	123	37	25	2	35	1.68
17645277--17645361	30	2.9	30	81	10	95	35	22	2	40	1.67
17650312--17650725	39	10.6	39	69	7	257	23	30	20	25	1.98
17650307--17650611	78	3.9	78	86	0	385	22	29	21	25	1.99
17650429--17650711	117	2.4	117	84	3	329	23	29	19	27	1.98
17650468--17650725	117	2.2	117	86	0	363	23	29	20	27	1.99
17651142--17651176	7	4.7	7	86	13	52	42	0	0	57	0.99
17651142--17651186	16	2.9	16	87	12	60	42	2	0	55	1.12
17651145--17651248	6	18.0	6	73	12	58	42	0	3	52	1.26
17651150--17651234	17	5.1	17	82	5	102	40	1	3	55	1.25
17651203--17651250	24	2.0	24	88	4	71	50	0	2	47	1.12
17651877--17651924	24	2.0	24	87	0	69	62	2	0	35	1.07
17653058--17653392	30	11.2	30	80	6	274	38	25	3	32	1.72
17653058--17653360	61	5.1	60	78	9	246	38	26	3	32	1.72
17653058--17653283	91	2.5	91	86	4	323	38	25	3	33	1.71
17653087--17653392	29	10.3	28	79	6	157	38	25	2	32	1.71
17653348--17653412	30	2.2	30	86	5	87	38	18	3	40	1.66
17656042--17656116	24	3.1	24	94	0	123	25	12	8	54	1.64
17657990--17658064	24	3.1	24	94	0	123	26	10	6	56	1.58
17657990--17658080	24	3.8	25	88	4	89	27	12	7	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17666748--17666792	21	2.0	22	87	8	65	35	0	0	64	0.94
17669391--17669442	21	2.5	21	78	6	61	34	26	9	28	1.88
17676810--17676847	19	2.1	19	85	5	51	71	2	21	5	1.19
17681170--17681228	17	3.3	17	79	9	64	28	6	0	64	1.19
17681273--17681305	2	16.5	2	100	0	66	51	0	0	48	1.00
17681486--17681528	15	2.9	15	82	0	59	53	6	20	18	1.67
17681457--17681527	30	2.4	29	84	11	83	52	7	21	19	1.70
17682454--17682522	21	3.3	21	76	11	70	34	23	14	27	1.94
17702162--17702200	11	3.6	11	89	3	62	64	2	0	33	1.08
17708284--17708417	40	3.3	39	76	7	115	34	18	26	20	1.96
17708360--17708473	41	2.7	41	83	2	147	30	18	30	20	1.96
17710105--17710435	41	8.1	41	82	0	374	32	15	29	22	1.95
17710105--17710428	82	4.0	82	87	0	414	32	15	29	22	1.95
17713293--17713491	36	5.8	36	85	6	272	34	15	26	24	1.95
17713293--17713462	71	2.4	72	95	1	306	34	15	25	24	1.94
17713436--17713490	28	2.0	28	96	0	101	30	18	29	21	1.97
17718941--17718987	23	2.0	23	95	0	85	29	29	19	21	1.97
17718947--17718996	23	2.3	22	82	6	57	32	24	24	20	1.98
17727175--17727219	18	2.5	18	85	7	56	55	0	2	42	1.12
17727175--17727217	21	2.0	21	86	0	59	58	0	2	39	1.11
17728268--17728306	18	2.2	19	86	9	55	56	0	23	20	1.42
17736889--17736928	18	2.3	18	86	4	55	17	15	10	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17737449--17737498	14	3.6	14	89	10	75	82	0	18	0	0.68
17737452--17737504	8	7.3	7	89	10	72	84	0	15	0	0.61
17739255--17739312	26	2.2	26	84	0	80	27	20	22	29	1.99
17748191--17748266	17	4.4	17	77	1	71	19	21	11	47	1.81
17749308--17749380	26	2.8	26	89	0	119	27	23	21	27	1.99
17754348--17754382	17	2.1	17	88	0	52	71	11	14	2	1.25
17754557--17754616	27	2.3	26	77	11	70	36	1	3	58	1.25
17754638--17754686	19	2.5	20	90	6	75	34	0	8	57	1.29
17754653--17754697	10	4.5	11	78	21	53	33	0	8	57	1.30
17754769--17754806	18	2.1	18	95	0	67	28	5	13	52	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143