genome.fa.s11.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  128  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37541331--37541398	27	2.5	27	79	15	79	29	2	10	57	1.47
37541595--37541873	32	8.7	32	87	2	375	44	14	18	22	1.86
37543683--37543742	28	2.1	29	87	9	88	46	1	20	31	1.60
37543761--37544086	29	11.2	28	68	15	128	37	4	21	36	1.75
37543719--37543972	59	4.3	59	82	1	294	41	6	20	31	1.78
37543660--37543933	117	2.3	117	81	3	293	42	5	21	30	1.76
37543751--37544001	117	2.1	117	87	4	355	39	6	19	33	1.77
37543952--37544218	87	3.0	85	78	8	275	35	3	22	38	1.71
37543954--37544218	30	9.1	28	75	10	185	35	3	22	38	1.71
37543952--37544218	29	9.1	29	76	7	186	35	3	22	38	1.71
37545196--37545238	3	14.0	3	80	4	50	32	2	4	60	1.30
37545206--37545235	16	1.9	15	93	6	51	33	0	6	60	1.23
37546722--37546803	39	2.1	39	84	4	103	26	21	26	24	2.00
37546945--37548178	92	13.5	92	87	4	1680	32	18	15	32	1.93
37547279--37547441	52	3.3	52	66	23	145	31	17	15	34	1.92
37546945--37548178	184	6.8	183	90	3	1893	32	18	15	32	1.93
37547515--37547663	40	3.8	37	72	17	124	36	20	16	27	1.93
37547513--37547663	78	1.9	78	95	0	275	35	20	15	27	1.93
37546945--37548178	276	4.5	276	88	4	1890	32	18	15	32	1.93
37549638--37549707	28	2.4	28	86	11	88	47	2	18	31	1.63
37549699--37549878	59	3.1	59	86	0	254	40	8	20	31	1.82
37549624--37549911	118	2.5	116	79	8	316	40	6	22	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37549860--37550023	29	5.7	29	79	9	156	33	3	22	40	1.72
37549872--37550063	88	2.2	89	82	8	232	34	4	21	39	1.74
37550935--37550983	3	16.0	3	79	12	55	30	2	6	61	1.32
37551448--37551488	22	2.0	21	85	9	57	21	17	41	19	1.90
37551702--37551798	17	5.6	17	67	8	61	53	5	3	38	1.39
37553550--37553596	22	2.1	22	100	0	94	6	4	31	57	1.43
37558229--37558260	16	2.0	16	100	0	64	43	6	25	25	1.77
37566571--37566716	73	2.0	70	92	3	238	20	28	15	35	1.93
37567493--37567800	105	2.9	104	80	3	343	43	20	14	21	1.87
37569828--37569917	35	2.6	36	77	11	89	58	11	4	25	1.50
37574636--37574670	15	2.2	17	90	10	56	14	11	5	68	1.37
37579123--37579247	66	1.9	65	95	1	223	48	11	21	19	1.80
37583778--37583847	32	2.2	31	85	7	88	40	10	5	44	1.62
37583884--37583980	47	2.1	46	94	1	167	38	5	2	54	1.34
37589320--37589375	25	2.1	27	87	12	82	57	5	0	37	1.22
37589741--37589792	26	2.0	26	96	0	95	63	3	0	32	1.12
37593712--37593783	25	2.9	25	72	15	67	40	0	2	56	1.13
37597845--37597883	19	2.0	21	85	10	55	46	5	2	46	1.38
37605318--37605409	17	5.5	17	78	11	93	50	4	1	44	1.29
37605318--37605409	6	15.5	6	71	10	73	50	4	1	44	1.29
37605694--37606219	76	7.1	76	87	6	747	34	17	13	34	1.90
37605743--37605876	38	3.6	37	69	20	107	34	14	15	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37605694--37606202	71	6.9	72	86	7	652	34	18	13	34	1.89
37605694--37606220	220	2.4	223	91	2	855	34	17	13	33	1.90
37606510--37606817	135	2.3	135	95	1	544	15	23	19	41	1.89
37606696--37606816	51	2.4	50	83	2	136	14	24	20	40	1.89
37615066--37615157	17	5.5	17	78	11	93	50	4	1	44	1.29
37615066--37615157	6	15.5	6	71	10	73	50	4	1	44	1.29
37615840--37615951	41	2.8	40	85	6	154	32	16	27	24	1.96
37615857--37615930	24	3.4	24	63	24	63	32	17	31	18	1.95
37615880--37616197	41	7.8	41	82	4	333	33	20	26	19	1.96
37619825--37619857	17	1.9	17	93	0	57	30	3	0	66	1.06
37619955--37620000	22	2.1	21	92	4	74	32	4	8	54	1.51
37622569--37622612	7	6.1	7	78	5	52	40	0	0	59	0.98
37622557--37622609	21	2.5	21	79	11	63	41	0	1	56	1.10
37623687--37623716	15	2.0	15	100	0	60	33	13	6	46	1.69
37635492--37635540	24	2.0	24	88	0	71	42	0	0	57	0.99
37638239--37638276	17	2.1	19	90	9	62	34	2	0	63	1.09
37638269--37638345	30	2.5	31	82	12	97	45	0	2	51	1.14
37641724--37641753	6	5.0	6	100	0	60	0	66	0	33	0.92
37642223--37642274	21	2.5	21	83	0	68	65	11	3	19	1.40
37647595--37647666	33	2.2	33	87	9	103	50	4	4	41	1.41
37647990--37648037	18	2.8	17	78	6	60	52	2	0	45	1.12
37658920--37658953	13	2.6	13	95	0	59	52	0	5	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37668907--37669117	23	9.1	23	83	9	170	11	23	24	40	1.87
37672198--37672526	61	5.4	60	76	10	287	40	13	17	28	1.87
37680171--37680242	33	2.2	33	87	9	103	50	4	4	41	1.41
37680560--37680609	17	3.0	16	77	8	55	54	2	0	44	1.11
37689576--37689609	13	2.6	13	95	0	59	52	0	5	41	1.25
37700374--37700411	17	2.1	19	90	9	62	34	2	0	63	1.09
37700405--37700489	31	2.5	33	81	11	102	45	0	2	51	1.13
37703853--37703888	6	6.0	6	100	0	72	0	66	0	33	0.92
37704359--37704410	21	2.5	21	83	0	68	65	11	3	19	1.40
37709722--37709793	33	2.2	33	87	9	103	50	4	4	41	1.41
37710112--37710161	17	3.0	16	77	8	55	54	2	0	44	1.11
37718490--37718523	13	2.6	13	95	0	59	52	0	5	41	1.25
37728389--37728485	23	4.1	23	88	7	124	10	23	22	43	1.84
37728424--37728575	23	6.6	22	80	10	105	13	23	23	40	1.89
37731511--37731985	61	7.8	58	74	9	353	38	13	18	28	1.89
37731526--37731992	184	2.6	180	81	6	550	39	14	17	28	1.89
37737651--37737689	15	2.4	16	87	8	53	35	0	0	64	0.94
37740268--37740305	17	2.1	19	90	9	62	34	2	0	63	1.09
37741597--37741648	21	2.5	21	83	0	68	65	11	3	19	1.40
37750396--37750465	37	1.9	36	94	2	122	22	30	14	32	1.94
37750962--37751224	131	2.0	132	95	2	476	30	17	16	35	1.92
37751671--37751710	18	2.2	19	90	4	64	22	2	5	70	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37754484--37754535	27	2.0	27	84	3	70	34	1	0	63	1.06
37754490--37754526	20	2.0	20	89	10	60	32	2	0	64	1.07
37754521--37754602	29	2.6	31	75	15	78	43	0	3	52	1.18
37758531--37758582	21	2.5	21	83	0	68	65	11	3	19	1.40
37759272--37760946	836	2.0	836	97	0	3170	31	23	16	27	1.96
37767324--37767393	37	1.9	36	94	2	122	22	30	14	32	1.94
37767887--37768153	133	2.0	133	97	0	498	30	17	16	36	1.91
37768603--37768642	18	2.2	19	90	4	64	22	2	5	70	1.19
37781127--37781522	60	6.5	59	76	11	284	40	13	16	29	1.87
37781148--37781519	122	3.0	121	74	14	289	40	13	16	29	1.87
37782787--37783428	60	10.7	59	77	10	563	39	14	18	27	1.89
37787013--37787091	23	3.4	23	85	1	95	13	25	16	44	1.85
37787076--37787155	23	3.5	22	83	5	97	13	22	27	36	1.92
37787053--37787155	45	2.3	46	75	8	104	12	24	26	36	1.91
37787586--37787836	60	4.3	59	79	8	271	35	14	21	29	1.93
37787572--37787841	118	2.3	117	83	7	323	34	14	20	30	1.92
37788473--37788926	60	7.6	61	81	7	468	40	14	17	28	1.88
37788485--37789122	121	5.4	120	78	10	583	39	15	17	28	1.90
37788882--37788970	45	2.0	45	82	6	110	47	13	14	24	1.80
37788928--37789124	60	3.3	59	82	7	238	38	16	17	27	1.91
37788835--37789027	104	1.8	104	81	7	239	42	12	15	29	1.84
37788710--37789124	222	1.9	224	83	9	551	40	14	16	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37789720--37789794	33	2.3	33	95	2	134	24	25	17	33	1.96
37789886--37790005	43	2.8	43	85	0	159	20	26	27	25	1.99
37789986--37790023	18	2.1	18	100	0	76	10	28	28	31	1.90
37790370--37790517	66	2.2	66	86	2	208	16	22	14	45	1.85
37795930--37796523	49	11.6	49	74	16	456	45	5	2	46	1.40
37795972--37796104	18	8.0	18	66	20	74	44	5	1	48	1.34
37795930--37796523	97	5.8	98	77	12	534	45	5	2	46	1.40
37796177--37796316	18	8.4	18	68	16	68	45	3	1	49	1.28
37795921--37796523	258	2.3	257	94	0	1055	45	5	2	46	1.39
37796463--37796570	31	3.3	31	73	12	99	45	3	0	50	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143