genome.fa.s11.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  138  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40878239--40878318	31	2.5	32	86	12	110	41	2	1	55	1.21
40878215--40878318	11	9.5	11	70	21	67	40	1	2	54	1.26
40880272--40880642	30	12.4	30	85	5	475	38	23	2	35	1.70
40886613--40886867	30	8.8	29	82	11	281	32	1	23	41	1.62
40886613--40886867	59	4.4	59	90	3	358	32	1	23	41	1.62
40887732--40887794	12	5.2	12	79	9	56	38	4	0	57	1.20
40888549--40888629	17	4.8	16	85	8	90	53	2	2	41	1.27
40888580--40888664	6	14.5	6	72	14	70	57	2	0	40	1.11
40888580--40888693	41	2.8	41	82	1	140	57	5	0	36	1.21
40888620--40888664	17	2.6	18	92	3	74	57	2	0	40	1.11
40888610--40888692	23	3.6	23	70	15	64	57	6	0	36	1.23
40888602--40888675	12	6.9	11	70	21	50	56	2	0	40	1.13
40889711--40889747	17	2.2	17	90	0	56	62	2	0	35	1.10
40889779--40889818	13	3.0	13	85	14	55	42	25	15	17	1.88
40891524--40891730	88	2.3	89	76	11	212	36	25	2	35	1.69
40891524--40891902	59	6.4	58	81	10	321	34	25	2	37	1.70
40891524--40891902	29	12.9	29	70	17	180	34	25	2	37	1.70
40891566--40891932	59	6.3	57	83	8	334	33	25	2	38	1.71
40894075--40894740	92	7.4	92	91	4	1079	32	14	18	33	1.92
40894075--40894694	265	2.3	263	91	4	988	32	15	18	33	1.92
40894496--40894780	40	6.5	41	70	23	147	31	14	18	35	1.91
40894718--40895412	183	3.8	184	96	0	1288	33	13	16	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40894718--40895412	275	2.5	275	96	1	1277	33	13	16	36	1.87
40894718--40895412	92	7.6	92	97	0	1288	33	13	16	36	1.87
40895728--40895803	17	4.4	17	75	17	59	35	1	7	55	1.37
40895755--40895810	17	3.2	17	80	9	60	42	0	7	50	1.30
40896135--40896220	31	2.9	29	83	10	111	36	26	4	32	1.77
40896186--40896323	59	2.4	58	81	10	158	33	30	5	31	1.79
40902520--40902824	154	2.0	154	94	1	540	30	26	17	25	1.97
40908167--40908738	92	6.2	92	97	0	1074	33	13	15	36	1.87
40909080--40909135	17	3.2	17	80	9	60	42	0	7	50	1.30
40909804--40909878	3	24.3	3	75	5	60	60	4	2	33	1.30
40910924--40911027	31	3.5	30	78	10	115	35	22	8	33	1.85
40910993--40911130	58	2.4	59	85	2	190	34	29	3	31	1.75
40913355--40913425	11	5.9	11	71	18	52	42	1	1	54	1.17
40913441--40914168	363	2.0	363	100	0	1456	35	26	15	22	1.93
40915402--40915859	30	15.4	30	84	4	570	38	22	3	35	1.72
40915397--40915859	89	5.2	90	86	3	580	38	22	3	35	1.73
40915819--40915952	58	2.4	54	79	14	137	33	30	3	32	1.75
40917048--40917086	17	2.3	17	86	8	53	41	23	2	33	1.68
40917428--40917674	67	3.8	67	95	3	427	37	6	17	38	1.77
40917736--40917797	24	2.7	23	71	14	54	61	1	4	32	1.27
40919127--40919158	6	5.3	6	100	0	64	31	0	0	68	0.90
40921539--40921594	28	2.0	28	100	0	112	39	3	3	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40921539--40921603	28	2.7	24	84	15	73	41	3	4	50	1.38
40925300--40925354	21	2.5	22	76	11	58	5	16	32	45	1.70
40925325--40925363	12	3.2	12	85	0	51	2	20	33	43	1.65
40925976--40926035	30	2.0	30	90	0	93	50	11	10	28	1.71
40927049--40927199	3	50.3	3	89	0	131	0	20	33	45	1.51
40927049--40927202	12	12.8	12	88	0	173	0	20	33	46	1.51
40927252--40927277	12	2.2	12	100	0	52	0	23	34	42	1.54
40927242--40927274	15	2.2	15	94	0	57	3	27	33	36	1.72
40927249--40927324	18	4.4	18	77	12	70	5	18	35	40	1.73
40932327--40932417	31	3.0	30	77	6	78	41	10	10	36	1.76
40932846--40932875	15	2.0	15	100	0	60	40	13	6	40	1.71
40937641--40937675	6	5.8	6	100	0	70	68	14	17	0	1.21
40938205--40938255	23	2.3	22	83	12	68	60	3	3	31	1.33
40939364--40939398	6	5.8	6	93	0	61	34	17	31	17	1.93
40944383--40944422	20	2.0	20	85	9	55	85	0	5	10	0.75
40946180--40946236	28	2.0	28	82	0	69	28	10	15	45	1.79
40965158--40965219	26	2.3	27	91	5	99	32	41	1	24	1.64
40979157--40979183	11	2.5	11	100	0	54	48	11	25	14	1.77
40983708--40983746	21	2.0	21	85	10	55	69	2	2	25	1.14
40984857--40984916	31	2.0	30	87	9	86	50	5	5	40	1.46
40995922--40995966	6	7.5	6	82	0	54	26	0	57	15	1.38
41000198--41000235	18	2.1	18	100	0	76	55	5	10	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41000201--41000247	18	2.6	18	89	3	67	59	4	12	23	1.51
41000436--41000461	9	2.9	9	100	0	52	7	11	11	69	1.37
41003870--41004195	178	1.8	178	85	3	460	33	17	17	32	1.93
41012101--41012130	2	15.5	2	93	6	53	50	0	0	50	1.00
41013334--41013369	1	36.0	1	88	0	54	0	94	0	5	0.31
41020294--41020349	29	1.9	29	85	7	78	37	12	8	41	1.74
41028272--41028607	170	2.0	172	87	2	489	28	21	17	32	1.96
41029170--41029201	2	16.0	2	93	0	55	50	3	0	46	1.17
41038329--41038437	54	2.0	54	96	0	200	33	10	18	38	1.84
41040043--41040132	28	3.1	27	77	13	90	22	8	8	60	1.55
41040021--41040184	59	2.8	60	81	6	174	24	9	11	54	1.65
41040021--41040118	31	3.3	30	76	13	103	23	7	12	57	1.60
41040406--41040465	31	1.9	32	86	3	86	51	8	13	26	1.69
41041218--41041261	15	3.0	15	80	6	54	50	4	0	45	1.22
41044528--41044568	15	2.7	16	77	11	50	75	0	17	7	1.02
41047027--41047097	37	1.9	36	88	8	108	28	21	14	36	1.92
41055060--41055084	13	1.9	13	100	0	50	64	4	0	32	1.12
41059379--41059407	13	2.1	14	93	6	51	58	3	31	6	1.41
41059817--41059862	23	2.0	23	100	0	92	34	4	17	43	1.69
41074782--41074856	30	2.4	30	80	12	89	62	0	9	28	1.26
41078968--41078993	6	4.3	6	100	0	52	0	84	0	15	0.62
41082553--41082578	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41087917--41087949	16	2.0	17	88	5	50	33	6	0	60	1.21
41088014--41088117	31	3.4	31	78	7	140	44	8	3	43	1.53
41105631--41105662	17	1.9	17	93	6	57	25	3	0	71	1.00
41105632--41105671	17	2.4	17	87	8	55	27	2	2	67	1.16
41111258--41111313	25	2.2	25	81	12	69	60	12	5	21	1.51
41111257--41111314	26	2.2	26	81	6	73	62	12	5	20	1.49
41117218--41117283	31	2.2	31	83	5	82	34	0	10	54	1.35
41123917--41123947	3	10.3	3	100	0	62	32	35	0	32	1.58
41130717--41130761	15	2.9	15	86	3	63	66	4	2	26	1.22
41131068--41131137	36	1.9	37	91	2	115	40	11	12	35	1.80
41182118--41182147	12	2.6	11	90	10	51	20	0	0	80	0.72
41187705--41187749	16	2.9	16	80	3	56	71	2	0	26	0.98
41188400--41188658	142	1.8	142	84	3	360	24	16	22	36	1.94
41189636--41189696	28	2.1	29	82	8	72	37	4	1	55	1.31
41189780--41190228	225	1.9	225	92	5	745	40	13	13	33	1.83
41190413--41190442	2	15.0	2	100	0	60	50	0	0	50	1.00
41198116--41198151	18	2.0	19	89	10	58	16	13	0	69	1.19
41203394--41203435	5	7.8	5	89	7	57	21	2	0	76	0.90
41218851--41218909	26	2.3	26	85	5	75	74	3	3	18	1.10
41220494--41221142	348	1.9	348	81	3	806	28	11	15	45	1.80
41229358--41229422	31	2.1	31	91	0	103	29	10	13	46	1.77
41231455--41231753	29	10.2	30	81	5	159	34	22	3	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41231475--41231753	88	3.2	88	77	6	233	34	22	3	39	1.72
41231453--41231753	59	5.1	58	74	6	185	34	22	3	39	1.72
41232706--41232744	19	2.1	19	85	4	53	64	0	0	35	0.94
41232714--41232753	19	2.2	19	90	4	64	65	0	0	35	0.93
41235680--41235937	134	1.9	135	91	0	419	32	15	18	33	1.92
41237754--41237783	3	10.0	3	100	0	60	0	33	0	66	0.92
41239424--41239518	31	3.1	31	89	0	145	30	6	14	48	1.69
41250576--41250645	35	2.0	35	91	0	113	50	8	4	37	1.53
41254718--41254797	40	2.0	40	87	0	115	42	23	5	28	1.75
41257986--41258018	16	2.1	16	100	0	66	45	0	30	24	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143