genome.fa.s11.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  22  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6609906--6609963	26	2.3	25	82	5	73	44	1	0	53	1.10
6609919--6609964	13	3.5	13	82	11	58	41	0	0	58	0.98
6613115--6613230	59	2.0	59	94	3	207	39	7	7	44	1.62
6621569--6621646	40	2.0	40	84	5	104	19	17	19	43	1.88
6627201--6627273	6	12.2	6	71	10	51	42	1	2	53	1.23
6627195--6627266	17	4.1	17	82	7	90	40	1	2	55	1.23
6627914--6627947	13	2.8	12	86	8	50	58	0	0	41	0.98
6628471--6628500	13	2.3	13	100	0	60	36	0	0	63	0.95
6629010--6629294	29	9.9	28	78	7	232	36	24	3	36	1.73
6629039--6629293	87	2.9	87	79	6	277	35	25	3	35	1.73
6629006--6629299	58	5.1	58	78	8	278	35	25	3	36	1.73
6632177--6632205	14	2.0	15	93	6	51	34	3	6	55	1.44
6632185--6632241	28	2.0	28	83	10	71	35	3	5	56	1.39
6637095--6637127	17	1.9	17	93	0	57	39	0	3	57	1.14
6637857--6637921	22	2.7	24	77	13	71	50	4	3	41	1.38
6638926--6639257	30	11.2	29	75	10	260	36	22	2	38	1.68
6639064--6639283	60	3.7	60	86	1	300	35	20	1	41	1.63
6638959--6639284	29	11.0	30	73	7	209	35	21	2	40	1.67
6640841--6641111	134	2.0	134	96	0	497	37	15	27	19	1.92
6651347--6652406	92	11.5	92	92	1	1730	33	16	18	31	1.93
6654564--6654990	30	14.4	30	75	12	332	37	20	1	40	1.64
6654576--6654989	89	4.6	87	79	8	399	37	20	1	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6654564--6654989	59	7.2	59	81	7	384	37	20	1	40	1.64
6654586--6655065	89	5.4	87	75	9	332	36	20	2	40	1.64
6655003--6655165	59	2.8	59	81	4	152	30	25	4	38	1.77
6655030--6655170	58	2.4	59	83	5	162	31	27	6	34	1.82
6661372--6661547	29	6.0	29	75	14	121	42	3	22	31	1.70
6661372--6661575	30	6.9	29	78	11	150	42	3	23	30	1.72
6661467--6661588	60	2.0	60	82	6	149	44	4	23	27	1.72
6662763--6662814	18	2.9	17	75	11	50	32	23	30	13	1.93
6663254--6663702	77	5.8	77	86	3	577	26	17	21	33	1.96
6663278--6663702	231	1.8	230	89	3	667	26	18	21	33	1.96
6663285--6663820	115	4.6	115	74	6	422	26	18	21	34	1.96
6663414--6663995	269	2.2	269	87	1	828	26	18	21	33	1.96
6663485--6663897	192	2.1	192	83	3	526	26	17	21	34	1.96
6663654--6663995	154	2.2	154	78	4	368	26	18	22	32	1.97
6663683--6663980	77	3.9	76	84	3	332	26	18	21	33	1.96
6675506--6675535	16	1.9	16	93	6	53	86	6	0	6	0.70
6675786--6675900	30	3.9	30	84	5	135	46	3	14	34	1.62
6675753--6675903	59	2.6	59	76	12	141	47	3	14	34	1.63
6675854--6675935	29	2.8	28	85	9	94	46	7	18	28	1.75
6675853--6675948	29	3.3	29	80	8	79	43	8	21	26	1.81
6676591--6676641	16	2.9	17	73	18	50	49	5	7	37	1.56
6677060--6677118	18	3.3	18	81	9	66	22	13	42	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6681141--6681220	39	2.0	40	92	2	135	30	21	18	30	1.97
6681145--6681237	39	2.4	38	82	7	98	30	22	18	29	1.97
6684223--6684279	28	2.0	28	100	0	114	36	21	10	31	1.87
6686112--6686191	39	2.0	40	95	2	144	30	22	17	30	1.97
6686116--6686208	39	2.4	38	85	7	107	30	23	17	29	1.97
6689461--6689487	7	3.9	7	100	0	54	29	0	11	59	1.32
6689540--6689584	21	2.2	20	92	4	72	37	0	0	62	0.96
6691237--6691320	29	2.9	29	69	19	68	32	13	14	40	1.84
6695077--6695126	18	2.6	19	84	12	59	38	0	4	58	1.17
6695077--6695127	19	2.7	20	82	14	63	37	0	3	58	1.16
6696820--6696906	19	4.5	19	73	2	75	35	27	19	17	1.94
6697808--6697855	21	2.3	21	96	0	87	35	18	8	37	1.81
6699441--6699475	15	2.3	15	90	0	52	68	22	5	2	1.24
6702404--6702447	23	1.9	23	90	0	70	34	2	15	47	1.58
6703797--6703825	8	3.6	8	100	0	58	62	0	0	37	0.96
6707046--6707106	18	3.4	17	81	18	70	39	4	1	54	1.32
6707046--6707106	20	3.3	18	84	10	79	39	4	1	54	1.32
6728609--6728723	38	3.0	38	87	2	151	33	20	16	30	1.94
6728827--6728913	6	15.0	6	68	20	60	44	2	1	51	1.21
6728827--6728896	17	4.0	17	81	5	86	42	2	1	52	1.24
6728827--6728899	35	2.1	36	86	2	103	42	2	1	53	1.23
6728827--6728914	17	5.4	17	72	20	53	45	2	1	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6730623--6730706	29	2.9	28	82	7	96	38	26	3	32	1.73
6730617--6730727	29	3.7	29	80	8	91	40	21	2	35	1.68
6730623--6730812	59	3.3	57	77	10	163	36	24	4	34	1.75
6730646--6730789	29	5.0	28	70	12	87	38	26	2	33	1.68
6730781--6730861	30	2.8	29	70	10	74	28	18	9	43	1.82
6730770--6730919	58	2.6	59	77	7	155	32	22	8	38	1.83
6730886--6730946	28	2.2	28	88	5	88	31	32	9	26	1.89
6735665--6735722	19	3.0	19	78	12	64	58	1	1	37	1.18
6735665--6735724	9	6.4	9	75	17	52	60	1	1	36	1.17
6736435--6736478	21	2.2	20	95	4	79	29	4	0	65	1.12
6740463--6740517	14	3.9	14	80	4	65	69	1	0	29	0.99
6740451--6740526	29	2.6	29	80	14	93	63	1	2	32	1.17
6740456--6740529	36	2.1	36	82	5	87	64	1	2	31	1.15
6740461--6740503	22	1.9	23	90	4	70	67	0	0	32	0.91
6743807--6743868	18	3.9	17	69	28	55	30	4	3	61	1.33
6743758--6743879	30	4.1	30	91	2	201	30	4	4	61	1.33
6743758--6743879	59	2.0	60	93	1	210	30	4	4	61	1.33
6744779--6745048	55	4.9	56	77	9	261	36	15	20	28	1.92
6744913--6745050	58	2.4	57	86	7	190	34	11	20	33	1.89
6745006--6745094	44	2.0	44	88	0	133	39	11	17	31	1.85
6744963--6745195	101	2.4	99	84	7	296	35	12	18	33	1.89
6759030--6759085	29	1.9	29	88	0	85	57	1	0	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6773021--6773184	28	5.9	28	80	5	156	23	21	17	36	1.95
6773009--6773195	84	2.2	83	78	9	193	22	22	17	36	1.94
6773175--6773240	29	2.3	29	81	0	78	34	22	6	36	1.79
6774519--6774553	2	17.5	2	93	0	61	48	0	0	51	1.00
6783403--6783429	2	13.5	2	100	0	54	0	0	48	51	1.00
6793350--6793408	30	2.0	30	83	6	75	25	18	37	18	1.94
6793807--6793839	17	1.9	18	88	11	52	18	0	9	72	1.10
6794655--6794688	17	2.0	17	88	0	50	23	5	5	64	1.38
6796232--6796517	29	9.7	28	65	24	110	34	3	30	32	1.74
6796227--6796547	59	5.4	59	87	6	429	34	3	29	33	1.73
6796235--6796515	30	9.5	29	66	28	105	34	3	29	32	1.73
6796453--6796558	30	3.6	30	69	21	78	33	2	28	35	1.72
6797626--6797668	3	14.3	3	100	0	86	34	0	0	65	0.93
6798092--6798143	22	2.2	22	83	10	59	23	21	40	15	1.91
6798303--6798383	31	2.5	32	82	4	92	48	2	4	44	1.37
6805743--6806035	52	5.7	52	90	0	444	29	13	22	34	1.92
6805743--6806035	155	1.9	156	89	0	453	29	13	22	34	1.92
6819350--6819374	13	1.9	13	100	0	50	60	0	0	40	0.97
6825122--6825200	37	2.1	37	83	2	95	21	18	26	32	1.97
6826149--6826185	17	2.1	19	90	10	60	45	0	13	40	1.43
6826160--6826261	53	1.9	53	82	7	127	50	2	5	40	1.41
6827198--6827231	18	1.9	18	88	5	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6832119--6832179	31	1.9	32	83	9	81	32	4	0	62	1.17
6832310--6832337	6	4.7	6	100	0	56	85	0	0	14	0.59
6832431--6832486	27	2.1	27	90	3	87	7	32	5	55	1.50
6833068--6833114	6	7.8	6	100	0	94	17	17	0	65	1.27
6834324--6834373	21	2.3	22	80	10	59	64	0	6	30	1.18
6834368--6834392	10	2.5	10	100	0	50	56	8	0	36	1.29
6835772--6835809	14	2.7	14	84	8	51	21	0	0	78	0.74
6836525--6836564	15	2.9	13	79	13	53	55	5	0	40	1.22
6836525--6836580	14	4.0	14	80	11	53	51	3	0	44	1.18
6836556--6836592	13	2.8	14	88	8	51	45	0	0	54	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143