genome.fa.s11.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  14  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4424110--4424370	61	4.3	61	76	7	257	28	19	17	34	1.94
4424533--4424592	31	1.9	31	86	0	84	21	11	21	45	1.84
4428085--4428133	12	3.8	12	75	19	53	51	0	8	40	1.32
4428350--4428505	45	3.5	45	69	17	137	36	3	5	53	1.43
4428265--4428555	89	3.3	89	86	9	391	37	4	4	52	1.44
4431862--4432133	57	4.8	56	76	9	246	36	16	19	27	1.93
4434424--4434450	2	13.5	2	100	0	54	48	0	0	51	1.00
4436298--4436340	20	2.1	21	82	4	52	72	11	0	16	1.13
4437295--4437323	5	5.8	5	100	0	58	37	0	0	62	0.96
4437535--4437627	4	24.5	4	77	14	51	29	1	0	69	0.95
4437536--4437630	19	5.1	19	67	27	60	29	1	0	69	0.95
4437535--4437630	8	10.4	9	74	19	67	29	1	0	69	0.95
4437539--4437627	25	3.8	24	70	22	64	29	1	0	69	0.95
4437642--4437707	31	2.1	31	86	8	89	16	13	4	65	1.43
4437701--4437896	62	3.3	61	75	13	228	21	4	10	63	1.44
4437701--4437938	116	2.1	115	98	0	440	21	5	9	63	1.43
4437764--4437808	19	2.4	19	85	7	56	20	6	0	73	1.05
4437761--4437938	54	3.1	54	73	14	196	20	5	8	65	1.41
4437761--4437835	27	2.8	27	68	8	62	20	6	4	69	1.28
4437880--4437924	19	2.4	19	85	7	56	20	6	0	73	1.05
4439327--4439386	29	2.1	29	93	0	102	31	28	11	28	1.92
4449275--4449314	14	2.6	14	85	14	53	42	7	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4451849--4451905	29	1.9	30	82	10	73	49	7	15	28	1.71
4461666--4461707	21	2.0	21	81	9	50	35	7	11	45	1.69
4466995--4467077	6	14.0	6	74	20	68	43	3	1	51	1.26
4467004--4467069	25	2.8	23	78	13	71	42	4	1	51	1.31
4468901--4469143	30	8.2	29	77	10	197	38	22	2	36	1.69
4468891--4469158	89	3.0	90	79	11	275	38	23	2	35	1.69
4469110--4469239	58	2.2	58	86	1	179	32	31	1	34	1.67
4481082--4481637	76	7.4	76	84	7	690	33	16	18	31	1.93
4482008--4482090	6	14.0	6	73	15	66	43	4	1	50	1.31
4482009--4482081	25	2.9	25	90	8	105	41	5	1	52	1.33
4483945--4484121	30	5.9	30	78	7	164	37	22	3	36	1.73
4483935--4484123	60	3.1	59	77	5	182	37	23	3	35	1.73
4483951--4484121	90	1.9	89	81	9	204	36	23	4	36	1.74
4484076--4484194	29	4.1	28	71	13	80	31	31	0	35	1.64
4484095--4484224	58	2.2	58	88	1	197	32	33	1	33	1.68
4488748--4488789	18	2.3	18	92	8	68	33	2	0	64	1.07
4489847--4490014	85	2.0	85	85	0	228	23	23	16	36	1.94
4489727--4490355	209	3.0	208	86	2	825	22	21	17	38	1.93
4490056--4490224	85	2.0	85	84	2	223	23	21	15	38	1.92
4490141--4490428	123	2.3	123	91	1	461	23	21	16	38	1.92
4490264--4490884	208	3.0	208	88	2	910	23	22	15	37	1.93
4490388--4490546	85	1.9	85	85	2	221	23	23	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4489932--4490677	331	2.2	332	88	1	1084	23	21	15	38	1.92
4490606--4490762	85	1.8	85	83	2	208	24	24	14	36	1.93
4489942--4490894	331	2.9	328	81	5	804	23	21	16	37	1.93
4491040--4491280	99	2.4	99	81	4	281	15	31	17	35	1.91
4491017--4491277	49	5.2	50	72	6	208	16	31	17	35	1.92
4491040--4491292	50	5.1	49	69	11	158	15	30	17	36	1.90
4492211--4492290	33	2.3	35	83	12	96	11	5	0	83	0.78
4492214--4492294	20	3.9	21	80	11	76	9	6	0	83	0.79
4492205--4492284	26	3.1	27	80	8	96	10	7	0	82	0.84
4492238--4492290	6	8.8	6	84	12	65	15	1	0	83	0.74
4492212--4492274	1	63.0	1	74	0	54	6	6	0	87	0.68
4492212--4492294	18	4.6	17	77	18	80	9	6	0	84	0.78
4498720--4498759	18	2.3	18	95	4	73	35	0	0	65	0.93
4499826--4499992	85	2.0	85	83	4	212	26	24	12	35	1.91
4499708--4500317	208	2.9	208	88	0	898	23	23	15	37	1.93
4500862--4500903	22	2.0	22	95	4	77	30	26	4	38	1.77
4501246--4501275	15	1.9	15	93	6	51	26	0	0	73	0.84
4512035--4512108	24	3.1	24	98	0	139	48	4	13	33	1.61
4512275--4512315	20	2.0	20	86	9	57	29	4	2	63	1.28
4514051--4514108	7	8.4	7	82	3	64	27	22	0	50	1.50
4526222--4526246	12	2.1	12	100	0	50	40	8	0	52	1.31
4526238--4526335	6	17.3	6	70	18	68	44	0	4	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4526279--4526330	26	2.0	26	88	0	77	44	0	1	53	1.11
4526245--4526330	11	7.8	11	71	14	61	44	0	3	52	1.18
4526238--4526366	17	7.7	16	81	10	125	46	0	3	49	1.20
4527032--4527082	22	2.5	20	85	14	77	43	0	5	50	1.26
4528197--4528312	30	3.9	30	80	7	96	37	20	2	39	1.67
4528298--4528432	55	2.4	57	81	9	152	31	31	4	33	1.78
4528325--4528432	58	1.9	55	85	9	146	30	32	4	32	1.78
4540102--4540348	40	5.6	41	67	24	146	33	12	15	38	1.86
4540042--4540430	92	4.2	92	96	0	699	33	13	15	37	1.86
4540697--4540793	17	5.8	17	86	4	117	45	1	3	50	1.24
4540689--4540713	12	2.1	12	100	0	50	40	8	0	52	1.31
4540712--4540797	11	7.8	11	73	10	68	43	0	3	53	1.18
4540705--4540802	6	17.3	6	70	18	68	43	0	4	52	1.20
4540705--4540833	17	7.6	17	78	12	115	44	0	3	51	1.19
4541499--4541549	22	2.5	20	85	14	77	43	0	5	50	1.26
4542650--4542843	30	6.7	28	75	12	124	39	23	0	36	1.59
4542751--4542886	56	2.4	57	81	8	152	33	30	2	33	1.73
4542778--4542886	58	1.9	56	85	7	148	33	31	2	33	1.72
4547557--4547603	21	2.2	21	85	7	60	44	29	8	17	1.78
4553647--4553744	6	16.8	6	72	10	78	42	3	4	50	1.37
4553632--4553762	17	8.2	17	68	19	68	43	2	4	49	1.35
4555258--4555320	32	1.9	33	87	9	94	20	7	9	61	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4555607--4555745	57	2.4	58	84	7	165	33	23	5	37	1.77
4555630--4555739	30	3.7	29	73	10	98	34	20	4	40	1.73
4556963--4557007	17	2.6	17	89	3	63	53	11	15	20	1.72
4557584--4557688	54	2.0	53	86	3	149	38	5	4	51	1.47
4559993--4560027	16	2.2	16	90	5	54	40	0	2	57	1.14
4574865--4574924	25	2.4	25	78	13	70	36	0	1	61	1.06
4575117--4575203	38	2.3	37	80	9	95	48	4	5	41	1.48
4575535--4575591	30	2.0	27	83	16	71	43	14	1	40	1.55
4579201--4579234	16	2.1	17	89	10	54	17	23	0	58	1.38
4580403--4580458	28	2.0	28	92	0	94	26	23	25	25	2.00
4582566--4582615	13	3.8	13	76	12	50	50	0	2	48	1.12
4583314--4583383	23	3.0	23	82	2	95	41	15	12	30	1.85
4595214--4595304	39	2.3	39	84	3	112	39	21	17	20	1.92
4597940--4597981	17	2.4	18	80	4	50	52	2	0	45	1.13
4598620--4598783	61	2.8	58	81	2	184	24	9	10	55	1.63
4603902--4603936	18	1.9	18	88	0	52	51	11	11	25	1.71
4614662--4614830	87	1.9	87	86	2	241	36	20	14	28	1.92
4614879--4614927	24	2.0	24	100	0	98	16	12	16	55	1.70
4615687--4615732	18	2.6	17	76	6	56	36	4	6	52	1.47
4615722--4615791	12	5.9	12	81	3	70	37	2	2	57	1.29
4615705--4615761	30	1.9	30	85	7	80	36	1	3	57	1.26
4615717--4615777	6	10.2	6	76	5	61	39	0	3	57	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4615734--4615810	35	2.2	35	83	4	93	41	2	2	53	1.28
4616417--4616459	15	2.9	15	89	0	50	53	0	4	41	1.21
4617490--4617834	162	2.1	162	90	3	568	26	17	13	42	1.86
4617960--4618273	58	5.4	58	86	4	436	35	30	1	32	1.68
4617960--4618273	59	5.4	55	83	7	301	35	30	1	32	1.68
4617960--4618309	58	6.0	56	82	6	319	34	30	2	32	1.73
4620737--4620824	44	2.0	44	88	0	131	50	26	11	12	1.74
4624575--4624607	7	4.7	7	96	0	57	39	0	18	42	1.50
4624714--4624779	31	2.2	29	82	15	73	62	1	1	34	1.14
4627614--4627657	22	2.0	21	91	4	70	9	13	18	59	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143