genome.fa.s11.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  111  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33761579--33761609	14	2.2	14	100	0	62	6	22	0	70	1.09
33780969--33780996	2	14.0	2	100	0	56	50	0	50	0	1.00
33784610--33784656	25	2.0	23	87	8	67	59	6	2	31	1.34
33787570--33787607	11	3.4	11	85	7	58	52	7	0	39	1.31
33787884--33787917	16	2.1	17	94	5	61	44	0	0	55	0.99
33793143--33793209	3	22.3	3	100	0	134	0	32	0	67	0.91
33796769--33796806	3	12.7	3	100	0	76	34	0	0	65	0.93
33803313--33803379	31	2.2	31	86	0	89	29	5	17	46	1.72
33807364--33807794	58	7.4	58	89	3	627	32	3	31	32	1.73
33826458--33826524	33	2.0	33	88	0	98	13	22	19	44	1.85
33826666--33826861	57	3.4	57	78	0	185	18	27	15	38	1.91
33832072--33832132	28	2.2	28	88	5	88	32	22	9	34	1.87
33831925--33832143	113	1.9	112	90	1	348	43	19	8	28	1.80
33832442--33832480	16	2.4	16	83	8	53	48	0	2	48	1.15
33833002--33833059	23	2.5	23	80	2	62	36	12	12	39	1.80
33834686--33834726	15	2.9	15	79	17	52	24	0	7	68	1.15
33842659--33842749	28	3.1	29	77	10	78	35	0	1	63	1.02
33850592--33850625	12	2.8	12	86	0	50	35	11	11	41	1.78
33851697--33851730	12	2.8	12	86	0	50	35	11	11	41	1.78
33851177--33853061	792	2.4	790	89	1	2902	34	13	20	32	1.91
33856999--33857026	12	2.3	12	100	0	56	35	10	39	14	1.81
33859556--33859617	31	2.0	31	87	6	90	43	4	14	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33865001--33865057	29	2.0	29	85	0	78	50	12	1	35	1.50
33875927--33876032	41	2.6	40	85	7	126	25	27	14	33	1.94
33875962--33876074	41	2.8	40	81	6	102	25	24	15	33	1.95
33880280--33880338	29	2.0	30	86	3	84	27	8	15	49	1.73
33884200--33884256	29	2.0	29	85	0	78	50	10	1	36	1.47
33886826--33886856	16	1.9	16	93	0	53	29	0	0	70	0.87
33895320--33895371	16	3.4	16	74	15	56	28	1	13	55	1.49
33898438--33898525	44	2.0	44	86	0	122	34	9	4	52	1.54
33921487--33921529	22	1.9	23	90	4	70	60	0	0	39	0.97
33921507--33921543	16	2.2	17	90	9	58	56	0	0	43	0.99
33921710--33921737	13	2.2	13	100	0	56	60	7	0	32	1.24
33921979--33922037	24	2.6	23	81	7	66	67	6	0	25	1.15
33937038--33937078	20	2.0	21	85	9	57	65	2	12	19	1.36
33955915--33956069	59	2.6	59	75	4	143	40	5	25	28	1.79
33956079--33956229	30	5.0	30	84	7	155	38	1	21	37	1.65
33956079--33956229	60	2.5	60	84	5	180	38	1	21	37	1.65
33958078--33958156	25	3.0	25	87	5	95	54	2	3	39	1.32
33958095--33958150	16	3.6	16	86	9	62	57	3	1	37	1.27
33958502--33958902	68	5.9	68	95	0	685	29	20	15	34	1.94
33958645--33959142	242	2.1	242	96	0	908	30	20	15	33	1.93
33958713--33959076	174	2.1	174	94	0	631	31	20	14	33	1.93
33958886--33959351	68	6.8	68	91	0	725	30	20	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33958577--33959212	310	2.1	310	98	0	1220	30	20	15	34	1.94
33958881--33959352	204	2.3	204	93	1	820	30	20	15	33	1.93
33971198--33971371	30	5.7	30	82	3	197	36	2	22	37	1.70
33971170--33971362	61	3.2	61	80	5	205	36	3	25	34	1.72
33973222--33973304	6	14.0	6	72	20	68	51	1	3	43	1.26
33973231--33973315	25	3.4	25	87	6	102	54	2	3	40	1.31
33977440--33977466	7	3.9	7	100	0	54	29	25	29	14	1.95
33977596--33977644	15	3.3	15	74	20	50	24	16	6	53	1.66
33978106--33978138	4	8.0	4	93	6	57	51	0	0	48	1.00
33978105--33978148	12	3.4	13	87	9	63	54	0	2	43	1.12
33980717--33982053	228	5.9	228	87	1	1446	21	25	23	29	1.99
33980756--33982053	684	1.9	684	82	2	1620	22	25	23	29	1.99
33988231--33988406	59	2.9	59	81	8	205	43	1	1	53	1.18
33988564--33988631	16	4.2	16	86	0	91	30	27	1	39	1.66
33989058--33989146	29	3.1	27	69	18	65	50	1	2	46	1.21
33991146--33991182	19	1.9	18	89	10	56	37	0	0	62	0.96
33991140--33991205	30	2.2	30	81	10	82	28	4	0	66	1.11
34006203--34006256	18	2.8	20	75	13	58	38	5	3	51	1.43
34006500--34006572	36	2.1	35	85	12	98	21	16	36	24	1.94
34006548--34006582	16	2.2	16	89	0	52	20	20	37	22	1.95
34009343--34009745	126	3.2	126	83	4	477	41	16	14	27	1.87
34009359--34009746	130	3.0	128	83	4	451	42	16	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34013012--34013050	20	2.0	20	89	0	60	33	10	0	56	1.33
34016117--34016160	19	2.3	19	80	7	54	79	0	11	9	0.93
34018117--34018162	22	2.1	22	100	0	92	52	4	13	30	1.59
34019875--34019996	59	2.1	59	98	0	235	41	9	4	44	1.57
34033081--34033168	30	2.9	30	98	0	167	19	13	47	19	1.82
34033081--34033200	60	2.0	60	85	9	165	19	11	50	19	1.78
34033755--34033789	15	2.3	15	90	0	52	2	42	0	54	1.15
34033748--34033791	9	4.9	9	80	0	52	2	43	0	54	1.12
34040841--34040886	21	2.2	21	88	3	67	39	0	2	58	1.10
34049286--34049326	22	1.9	21	90	5	64	65	2	0	31	1.05
34050073--34050164	29	3.1	30	80	4	114	38	13	5	43	1.66
34055429--34055498	30	2.4	30	78	7	81	35	7	0	57	1.26
34061243--34061302	31	1.9	32	89	3	95	43	13	13	30	1.82
34070562--34070600	17	2.3	17	90	0	60	15	12	25	46	1.81
34080345--34080402	29	2.0	29	86	3	80	60	0	6	32	1.23
34080416--34080454	19	2.2	17	86	9	51	53	0	10	35	1.35
34080533--34080574	10	4.3	10	87	3	59	78	0	0	21	0.75
34080533--34080574	20	2.1	20	91	8	68	78	0	0	21	0.75
34080847--34080888	21	2.0	21	86	13	59	40	0	2	57	1.12
34080848--34080909	22	2.9	22	76	16	67	35	1	1	61	1.16
34082619--34082643	13	1.9	13	100	0	50	8	8	0	84	0.79
34088305--34088334	13	2.4	12	94	5	51	86	0	13	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34098769--34098805	15	2.4	16	86	8	51	62	5	0	32	1.18
34099476--34099540	30	2.2	30	82	0	76	53	15	7	23	1.67
34110257--34110307	25	1.9	26	88	11	77	43	0	3	52	1.19
34110441--34110484	21	2.2	20	87	4	61	54	4	6	34	1.47
34121557--34121629	14	5.4	14	72	16	55	45	0	0	54	0.99
34129233--34129289	13	4.2	13	75	16	53	24	3	1	70	1.13
34132845--34132899	17	3.1	17	72	23	51	23	1	7	67	1.26
34150065--34150179	58	2.0	56	88	3	167	28	6	12	53	1.62
34154558--34154599	18	2.3	18	84	8	50	42	2	9	45	1.49
34155944--34156004	27	2.3	26	80	5	68	24	0	27	47	1.52
34156026--34156074	16	3.0	16	82	11	55	24	2	0	73	0.94
34160228--34160265	16	2.4	16	95	0	67	21	23	31	23	1.98
34160181--34160317	68	2.0	68	91	2	222	25	18	25	30	1.98
34160249--34160434	52	3.6	52	86	0	255	26	17	24	31	1.97
34162255--34162436	67	2.9	61	83	13	221	52	2	0	44	1.17
34162255--34162430	63	2.7	63	85	10	234	52	2	0	44	1.17
34162963--34164413	80	18.2	80	93	0	2365	25	18	23	32	1.97
34164499--34164644	50	2.9	50	84	2	168	22	25	18	33	1.97
34165569--34165626	6	8.8	6	75	17	53	0	17	1	81	0.78
34165567--34165625	20	2.9	20	80	14	68	0	18	1	79	0.81
34165570--34165625	26	2.2	26	90	0	85	0	17	1	80	0.80
34165568--34165628	14	4.4	14	77	10	72	0	16	1	81	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34165575--34165646	8	8.6	8	71	19	58	4	13	1	80	0.92
34165570--34165645	26	3.0	25	83	9	73	3	14	1	80	0.92
34165575--34165646	33	2.2	33	82	12	85	4	13	1	80	0.92
34170626--34170796	67	2.7	61	82	14	206	52	2	0	45	1.18
34170626--34170800	63	2.7	63	85	10	232	52	2	0	44	1.17
34170648--34170811	63	2.5	64	88	8	235	57	2	0	39	1.16
34170776--34170824	22	2.2	23	82	10	57	73	0	4	22	1.00
34172049--34172073	1	25.0	1	100	0	50	0	0	100	0	0.00
34172421--34172474	16	3.4	16	75	17	58	68	20	0	11	1.19
34174877--34174988	58	1.9	58	91	7	183	47	21	0	31	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143