genome.fa.s11.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  125  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36847014--36847076	12	5.2	12	73	19	60	80	0	15	3	0.83
36847014--36847076	28	2.4	26	82	14	85	80	0	15	3	0.83
36847008--36847079	37	2.0	35	81	10	83	77	0	15	6	0.96
36847017--36847073	15	3.9	15	70	21	50	78	0	17	3	0.88
36846996--36847077	35	2.3	35	85	8	103	76	0	15	7	0.99
36847977--36848128	48	3.1	49	69	6	128	32	15	34	17	1.91
36847977--36848238	98	2.7	99	82	3	296	33	15	32	17	1.92
36848054--36848236	99	1.9	98	87	3	269	34	15	32	17	1.91
36848007--36848648	50	13.0	49	72	7	348	34	16	30	19	1.93
36848008--36848648	100	6.5	99	77	4	409	34	16	30	19	1.93
36848008--36848642	150	4.3	150	76	3	489	34	15	30	19	1.93
36848902--36849403	39	12.9	39	67	9	195	23	28	20	26	1.99
36848900--36849424	78	6.7	78	78	3	464	23	29	20	26	1.99
36848900--36849471	232	2.4	234	81	4	654	24	30	19	25	1.98
36851141--36851176	18	2.0	18	88	0	54	61	0	38	0	0.96
36851680--36851793	29	3.9	29	83	8	142	33	25	3	37	1.73
36851689--36851804	30	4.0	28	78	11	108	32	26	4	36	1.76
36851722--36851852	29	4.5	30	79	11	121	37	26	2	33	1.69
36851700--36851902	58	3.5	58	76	11	175	36	25	2	34	1.71
36851700--36851852	59	2.6	58	82	9	161	35	26	2	34	1.71
36853101--36855534	358	6.9	355	73	14	1619	34	10	11	43	1.74
36853100--36855544	702	3.5	697	72	13	2082	34	10	11	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36855567--36855597	3	10.3	3	92	0	53	35	32	3	29	1.73
36857695--36857735	18	2.3	18	86	0	55	26	0	2	70	0.99
36863900--36863943	17	2.6	17	92	0	70	38	2	2	56	1.24
36863999--36864058	28	2.3	27	80	11	72	40	30	11	18	1.86
36865494--36865810	162	2.0	162	83	5	399	26	16	13	43	1.85
36865881--36866369	59	8.3	58	85	3	584	32	26	2	38	1.71
36865912--36866369	30	15.5	30	65	21	148	32	26	3	38	1.72
36866477--36866522	15	3.0	16	75	12	51	23	13	6	56	1.60
36878526--36878676	40	3.5	41	69	25	130	34	19	19	26	1.96
36878508--36879013	92	5.5	91	94	1	832	35	19	17	27	1.94
36878756--36878912	52	3.2	52	66	23	160	38	18	15	26	1.91
36879335--36879404	11	6.0	11	76	15	52	38	4	0	57	1.19
36879336--36879411	6	12.8	6	74	13	68	39	3	1	55	1.27
36879336--36879410	17	4.6	17	81	9	93	38	4	1	56	1.27
36879369--36879395	14	1.9	14	100	0	54	37	11	0	51	1.37
36879352--36879410	31	1.9	31	92	0	100	38	5	1	54	1.33
36879468--36879525	28	2.2	27	85	11	77	41	32	10	15	1.81
36880092--36880150	19	3.1	19	69	11	57	50	3	3	42	1.35
36880934--36881237	162	1.9	162	84	2	405	25	17	12	44	1.84
36880952--36881271	162	2.0	162	83	3	403	25	17	14	42	1.86
36881353--36881746	29	13.5	27	67	21	165	32	28	2	37	1.70
36881350--36881841	59	8.4	59	86	2	641	31	28	3	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36881380--36881836	29	15.5	30	65	20	139	31	27	3	37	1.72
36884527--36884561	17	2.1	17	88	0	52	14	11	0	74	1.08
36885636--36885669	17	2.0	17	88	0	50	52	5	0	41	1.25
36885832--36885873	19	2.3	19	84	8	52	52	0	2	45	1.13
36886920--36887127	42	4.8	42	87	7	258	30	13	32	23	1.94
36897401--36897426	13	2.0	13	100	0	52	30	7	15	46	1.74
36902092--36902342	59	4.3	58	84	4	315	34	2	29	33	1.72
36902092--36902342	118	2.1	117	88	1	376	34	2	29	33	1.72
36902090--36902311	30	7.5	30	70	18	151	35	2	27	33	1.71
36902082--36902349	29	9.1	30	69	20	147	33	3	29	33	1.75
36902980--36903016	15	2.5	14	87	12	56	13	29	0	56	1.37
36903998--36904041	6	7.7	6	82	7	56	43	0	2	54	1.12
36903998--36904041	17	2.6	18	85	7	56	43	0	2	54	1.12
36905275--36905309	3	11.7	3	90	0	52	2	28	31	37	1.72
36906879--36906908	3	10.0	3	100	0	60	66	0	0	33	0.92
36906922--36908741	359	5.0	355	74	10	1284	43	11	10	34	1.75
36907776--36908744	354	2.7	359	84	5	1286	45	10	10	34	1.72
36908728--36908758	3	10.3	3	100	0	62	64	0	0	35	0.94
36909559--36909598	3	13.3	3	100	0	80	65	0	0	35	0.93
36909616--36910741	303	3.8	296	84	8	1406	46	10	10	32	1.72
36910345--36910380	3	12.0	3	100	0	72	66	0	0	33	0.92
36910640--36910667	3	9.3	3	100	0	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36911060--36911089	13	2.3	13	100	0	60	73	0	6	20	1.05
36911482--36911541	29	2.1	29	87	6	88	26	3	5	65	1.29
36913445--36913485	16	2.3	19	88	12	61	65	0	2	31	1.05
36913811--36913867	19	2.9	19	77	10	62	28	3	3	64	1.26
36914290--36914369	41	2.0	41	85	5	108	48	6	17	27	1.71
36916288--36916325	3	12.7	3	100	0	76	68	0	0	31	0.90
36917633--36917677	15	3.1	15	87	6	65	8	0	33	57	1.30
36917646--36917677	7	4.4	7	96	4	55	12	0	28	59	1.34
36920933--36920961	6	4.8	6	100	0	58	17	13	51	17	1.76
36921626--36921750	58	2.1	57	79	13	139	44	16	9	29	1.79
36921980--36922128	74	2.0	74	100	0	298	31	17	14	36	1.90
36927756--36928067	96	3.2	97	78	7	326	18	23	17	40	1.91
36932793--36932829	9	4.3	9	80	13	51	75	2	13	8	1.13
36932793--36932825	16	2.0	17	88	5	50	75	3	12	9	1.14
36933628--36933728	38	2.6	40	71	10	100	21	19	28	29	1.98
36935580--36935689	35	3.2	34	83	7	125	42	0	3	53	1.18
36935612--36935689	6	13.5	6	70	17	58	46	0	2	51	1.14
36935612--36935658	23	2.0	23	88	8	69	42	0	4	53	1.20
36935580--36935689	52	2.1	52	89	0	166	42	0	3	53	1.18
36935615--36935670	11	4.9	11	80	10	60	39	0	3	57	1.16
36935580--36935689	17	6.4	17	82	7	132	42	0	3	53	1.18
36944062--36944751	92	7.5	92	92	1	1159	32	15	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36945008--36945072	17	3.8	16	76	13	67	35	0	7	56	1.28
36945007--36945088	35	2.3	35	83	4	103	37	0	6	56	1.24
36945018--36945068	23	2.2	24	82	10	61	37	0	9	52	1.34
36945059--36945101	17	2.4	18	88	3	61	46	0	0	53	1.00
36945007--36945099	35	2.6	34	77	12	91	40	0	5	53	1.24
36945744--36945807	32	2.0	32	85	11	87	57	3	3	35	1.30
36945745--36945795	3	16.7	3	76	11	50	58	3	1	35	1.28
36946941--36947243	29	10.3	29	70	13	129	39	22	1	36	1.64
36946941--36947243	30	10.3	29	72	11	136	39	22	1	36	1.64
36946933--36947281	59	5.9	59	75	10	230	38	22	2	35	1.68
36946994--36947281	29	9.9	29	72	12	130	38	23	2	35	1.68
36947215--36947434	118	1.9	119	79	2	255	34	22	6	36	1.81
36947294--36947434	59	2.4	59	81	3	158	33	22	7	36	1.83
36957913--36957946	13	2.7	13	86	4	52	35	0	0	64	0.94
36958014--36958070	19	2.9	20	79	7	64	66	3	1	28	1.18
36958395--36958436	18	2.4	18	80	4	50	28	2	2	66	1.16
36958494--36958551	20	2.9	19	75	12	55	65	3	3	27	1.25
36970955--36971274	49	6.5	49	74	7	254	40	21	22	15	1.91
36970998--36971280	99	2.9	99	85	5	351	39	21	23	15	1.91
36970955--36971274	148	2.2	148	81	4	360	40	21	22	15	1.91
36970955--36971312	49	7.3	48	71	9	206	40	20	22	16	1.91
36970998--36971433	99	4.4	99	78	6	329	39	20	23	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36971837--36971965	17	7.4	18	76	6	106	38	3	3	54	1.35
36971855--36971965	6	19.0	6	69	12	61	39	4	1	54	1.31
36971842--36971965	35	3.6	34	80	7	133	39	4	2	54	1.33
36975469--36975509	21	2.0	21	85	9	57	48	2	0	48	1.14
36975475--36975557	27	3.4	26	70	20	65	45	2	3	48	1.33
36977711--36977772	14	4.6	14	71	18	60	59	1	3	35	1.23
36977711--36977773	7	9.4	7	73	16	53	58	1	3	36	1.23
36980698--36980916	111	2.0	107	84	9	286	27	6	20	45	1.76
36983627--36983695	31	2.3	30	80	7	77	44	4	5	44	1.47
36985529--36985581	27	1.9	27	81	11	63	60	3	0	35	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143