genome.fa.s11.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  13  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4013913--4013950	19	2.0	19	89	0	58	13	18	21	47	1.82
4016422--4017145	362	2.0	362	99	0	1421	35	16	20	27	1.95
4019679--4019747	36	1.9	35	85	2	93	63	5	2	27	1.31
4021266--4021320	28	1.9	29	88	3	85	45	3	5	45	1.44
4023632--4023663	16	2.0	16	100	0	64	37	12	25	25	1.91
4028290--4028351	30	2.1	30	87	3	90	45	6	9	38	1.63
4032216--4032298	40	2.1	40	100	0	166	32	26	12	28	1.92
4032647--4032671	12	2.1	12	100	0	50	0	24	8	68	1.16
4042200--4042237	17	2.3	17	81	4	51	47	0	5	47	1.24
4048478--4048508	16	1.9	16	93	0	53	58	0	0	41	0.98
4049101--4049166	19	3.6	19	69	19	59	42	0	1	56	1.08
4056342--4056469	60	2.2	58	83	6	170	46	0	2	51	1.13
4061114--4061177	25	2.6	25	89	0	101	39	20	0	40	1.52
4061119--4061162	13	3.5	13	75	6	54	36	13	0	50	1.42
4062798--4062853	26	2.2	26	78	15	62	30	12	7	50	1.67
4062808--4062860	26	2.0	26	100	0	106	32	15	3	49	1.62
4069295--4069340	24	1.9	24	86	8	67	45	4	4	45	1.43
4070271--4070403	70	1.9	67	81	4	158	33	9	11	45	1.73
4073181--4073236	24	2.3	24	84	0	67	37	5	1	55	1.33
4073158--4073237	6	13.3	6	78	8	56	36	5	1	57	1.28
4073337--4073523	6	30.3	6	67	14	60	41	4	1	52	1.30
4073341--4073387	16	3.0	16	87	9	62	36	6	2	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4073334--4073485	7	22.0	7	64	24	56	39	4	1	54	1.29
4073378--4073520	11	12.2	11	73	12	83	41	4	1	52	1.29
4073378--4073595	17	12.5	17	72	13	92	39	5	2	51	1.41
4073435--4073524	18	4.7	19	79	15	105	45	1	1	52	1.15
4073648--4073691	23	2.0	23	90	4	72	27	15	0	56	1.40
4073730--4073769	18	2.2	18	90	0	62	37	12	0	50	1.41
4073642--4073769	12	10.9	12	71	10	77	33	11	2	52	1.51
4073769--4073793	13	1.9	13	100	0	50	32	0	20	48	1.50
4075789--4075836	6	8.3	6	90	9	82	0	64	0	35	0.94
4077384--4077429	24	1.9	24	86	8	67	45	2	4	47	1.34
4077766--4077821	26	2.2	25	81	12	69	67	7	0	25	1.15
4078645--4078679	17	1.9	18	88	11	54	80	5	11	2	1.00
4079618--4079653	6	6.0	6	100	0	72	50	0	50	0	1.00
4081251--4081285	18	1.9	18	88	0	52	34	2	17	45	1.63
4081602--4081638	15	2.5	15	95	0	65	27	10	16	45	1.80
4081597--4081641	15	2.5	19	70	30	53	24	15	15	44	1.85
4084596--4084626	3	10.3	3	100	0	62	32	0	0	67	0.91
4085180--4085256	40	2.0	40	87	7	113	42	14	6	36	1.71
4092937--4092963	4	6.8	4	100	0	54	77	0	22	0	0.76
4095201--4095230	15	1.9	16	93	6	53	26	0	0	73	0.84
4095203--4095264	18	3.7	17	75	8	56	27	1	0	70	0.96
4096474--4096605	37	3.6	36	76	8	106	47	10	22	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4097107--4097171	23	2.8	23	73	2	67	44	16	7	30	1.76
4097192--4097217	4	6.5	4	100	0	52	76	23	0	0	0.78
4097274--4097323	24	2.1	24	88	0	73	48	14	16	22	1.81
4097745--4097797	21	2.6	20	78	3	61	69	1	5	22	1.19
4097937--4097981	12	3.8	12	82	11	56	64	0	13	22	1.28
4099063--4099562	166	3.0	166	94	0	874	26	17	15	39	1.90
4104646--4104684	12	3.3	12	82	3	53	74	20	0	5	1.01
4104628--4104766	23	6.4	23	77	11	93	70	15	2	10	1.27
4104687--4104766	21	3.8	20	86	8	97	71	13	5	10	1.29
4104627--4104783	23	7.2	22	75	11	83	70	15	3	10	1.29
4115604--4115630	9	3.0	9	100	0	54	0	0	22	77	0.76
4123620--4123660	21	2.0	21	86	9	59	31	0	4	63	1.15
4128987--4129018	6	5.3	6	92	0	55	18	62	15	3	1.45
4132282--4132340	29	2.0	29	100	0	118	57	10	15	16	1.64
4137404--4137459	17	3.3	17	73	26	64	39	1	39	19	1.62
4142783--4142986	72	2.8	72	99	0	399	33	16	11	38	1.84
4144379--4144437	31	2.0	31	83	6	77	59	5	3	32	1.36
4144341--4144436	49	2.0	48	85	8	131	62	3	4	30	1.29
4144606--4144669	19	3.4	18	77	12	67	29	7	1	60	1.34
4144604--4144683	37	2.2	37	84	8	101	30	6	1	62	1.27
4148796--4150469	559	3.0	559	97	1	3112	33	20	16	29	1.95
4154932--4154965	14	2.2	16	90	10	54	26	14	2	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4155513--4155554	15	2.7	15	85	3	57	47	7	2	42	1.43
4159063--4159105	15	2.9	15	80	19	54	34	4	2	58	1.32
4172427--4172460	18	1.9	18	88	5	52	55	5	8	29	1.54
4178200--4178233	16	2.1	16	88	0	50	47	2	2	47	1.32
4178819--4178868	24	2.0	25	88	3	75	32	8	22	38	1.83
4183032--4183066	17	2.1	17	88	0	52	11	0	34	54	1.37
4191722--4191746	2	12.5	2	100	0	50	52	0	48	0	1.00
4195188--4195234	5	9.2	5	86	4	58	0	25	0	74	0.82
4195192--4195236	15	3.0	15	90	0	72	0	28	0	71	0.87
4195188--4195225	20	1.9	20	100	0	76	0	28	0	71	0.87
4213944--4214006	11	6.3	11	71	23	50	53	0	3	42	1.16
4213945--4214008	19	3.4	18	75	12	67	56	0	3	40	1.15
4214108--4214160	20	2.8	19	81	13	56	52	9	5	32	1.57
4214660--4214688	13	2.1	14	93	6	51	37	13	0	48	1.43
4214683--4214721	20	2.0	20	85	5	53	30	5	0	64	1.15
4215185--4215228	22	1.9	24	86	9	65	47	0	4	47	1.22
4220203--4220236	16	2.1	16	88	0	50	35	5	5	52	1.50
4236322--4236351	15	2.0	15	93	0	51	26	3	26	43	1.70
4241319--4241357	19	2.0	20	90	5	62	58	2	0	38	1.12
4242926--4242975	17	3.0	17	74	11	50	46	0	8	46	1.32
4255873--4255920	14	3.4	13	80	13	51	58	2	8	31	1.39
4259716--4259752	11	3.1	13	81	18	53	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4259720--4259757	11	3.2	12	81	11	51	39	0	0	60	0.97
4261549--4261608	20	3.0	20	65	26	54	36	3	8	51	1.49
4261533--4261608	40	1.9	39	91	2	125	36	3	6	52	1.46
4261720--4261758	15	2.6	15	87	0	51	30	7	5	56	1.49
4264683--4264849	63	2.6	65	86	10	229	41	0	3	54	1.18
4269768--4269809	22	2.0	20	86	9	57	42	0	0	57	0.99
4270611--4270646	19	1.9	19	88	5	56	30	2	2	63	1.22
4278478--4278523	24	1.9	24	81	0	56	21	19	13	45	1.84
4302220--4302380	82	2.0	82	87	4	236	19	22	16	41	1.90
4304605--4304649	17	2.6	16	83	13	54	53	6	0	40	1.27
4304668--4304728	26	2.5	24	79	12	61	65	1	0	32	1.02
4304684--4304746	30	2.1	30	82	11	76	68	0	0	31	0.90
4327400--4327659	126	2.1	126	84	1	333	24	25	25	25	2.00
4328899--4328933	16	2.2	16	90	10	54	57	2	0	40	1.14
4332355--4332425	25	2.8	26	80	4	92	50	11	1	36	1.47
4339474--4339541	28	2.4	28	79	13	77	41	0	4	54	1.20
4339474--4339551	20	4.1	19	77	12	72	39	0	5	55	1.22
4346450--4346488	4	9.8	4	100	0	78	76	0	23	0	0.78
4349369--4349451	40	2.1	40	84	4	105	28	21	10	38	1.87
4356901--4357029	65	2.0	65	92	0	213	41	23	13	22	1.89
4359212--4359243	16	2.0	16	93	0	55	40	6	6	46	1.54
4360323--4360371	21	2.5	19	83	6	53	59	4	4	32	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4360473--4360504	16	2.0	16	93	0	55	40	6	6	46	1.54
4370441--4370486	23	2.1	22	84	8	58	60	0	2	36	1.09
4375516--4375850	183	1.8	184	87	5	500	35	31	7	25	1.84
4380802--4380829	3	9.3	3	100	0	56	32	32	0	35	1.58
4408037--4408070	12	2.8	12	86	4	50	5	2	8	82	0.93
4409247--4409292	23	2.0	23	83	4	58	43	0	10	45	1.39
4412386--4412440	27	2.0	27	82	6	67	54	1	0	43	1.10
4418941--4419386	223	2.0	222	88	3	664	49	6	19	25	1.71
4424110--4424372	60	4.4	60	77	8	268	28	20	17	34	1.95
4424092--4424332	117	2.1	115	79	6	277	31	18	16	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143