genome.fa.s11.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  99  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30527441--30527503	33	1.9	32	84	9	83	50	0	0	49	1.00
30535832--30535876	16	2.8	17	75	18	51	0	37	0	62	0.96
30545050--30545302	42	5.9	43	84	6	229	33	11	25	29	1.90
30545050--30545302	84	3.0	85	80	10	261	33	11	25	29	1.90
30548076--30548100	3	8.3	3	100	0	50	68	0	0	32	0.90
30550265--30550299	2	17.5	2	87	0	52	57	0	0	42	0.99
30561130--30561391	59	4.4	59	86	6	336	32	3	32	31	1.75
30561198--30561357	29	5.4	29	68	24	102	33	3	31	31	1.74
30561134--30561388	29	8.7	27	69	22	101	33	3	32	31	1.74
30562375--30562421	15	3.1	15	79	11	60	38	2	4	55	1.31
30563109--30563150	15	2.8	15	96	0	75	16	7	28	47	1.73
30563179--30563233	17	3.6	15	80	20	53	47	1	3	47	1.30
30563661--30563738	31	2.6	30	79	4	84	48	11	16	23	1.78
30563974--30564021	16	2.8	17	75	9	53	43	0	0	56	0.99
30565791--30565823	18	1.9	17	88	11	50	30	0	3	66	1.06
30565906--30565955	25	2.0	25	84	7	66	62	2	2	34	1.18
30568489--30568527	19	2.1	19	100	0	78	30	5	15	48	1.66
30570816--30570854	15	2.6	15	84	8	53	23	0	7	69	1.14
30571437--30571461	12	2.1	12	100	0	50	24	8	0	68	1.16
30580020--30580379	184	2.0	184	100	0	720	34	14	14	36	1.87
30595810--30595844	6	5.8	6	100	0	70	17	14	17	51	1.77
30598830--30598861	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30599747--30599819	7	10.4	7	80	4	67	20	23	23	32	1.98
30606910--30606942	7	4.7	7	96	0	57	24	18	27	30	1.98
30606902--30606942	21	2.0	21	85	9	57	24	17	26	31	1.97
30608178--30608232	3	18.0	3	92	3	92	1	0	30	67	1.01
30610706--30610781	30	2.6	30	72	17	79	47	2	0	50	1.15
30617146--30617209	26	2.5	26	92	0	110	21	29	12	35	1.91
30617165--30617206	21	2.0	21	86	9	59	23	35	11	28	1.91
30618400--30618433	16	2.1	16	88	0	50	58	5	5	29	1.45
30623392--30623492	51	2.0	51	94	3	177	40	13	14	30	1.85
30626977--30627150	48	3.6	48	82	2	199	38	16	18	26	1.92
30633479--30633505	8	3.4	8	100	0	54	55	0	0	44	0.99
30640607--30640647	17	2.3	18	91	4	66	43	2	0	53	1.13
30640720--30640767	13	3.6	13	83	11	62	39	27	16	16	1.90
30641357--30641608	59	4.3	57	87	4	308	33	29	2	34	1.72
30641357--30641603	29	8.5	29	69	20	160	33	29	2	34	1.72
30641357--30641633	29	9.5	28	68	18	127	32	28	3	35	1.73
30641386--30641612	59	3.9	59	91	0	366	32	29	2	35	1.72
30648908--30648947	21	1.9	21	85	10	55	47	0	2	50	1.14
30651123--30651395	59	4.6	59	84	5	318	36	26	0	36	1.62
30651123--30651393	30	9.1	30	84	4	300	36	26	0	36	1.62
30656946--30657012	22	3.0	21	80	6	62	76	0	17	5	0.99
30656955--30657008	21	2.5	21	76	14	56	75	0	16	7	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30658024--30658301	147	1.9	148	86	2	398	34	14	31	20	1.92
30658168--30658711	99	5.5	99	78	7	449	33	15	30	19	1.93
30657929--30658463	246	2.2	246	80	2	635	35	16	29	19	1.93
30658163--30658708	196	2.8	198	78	4	510	34	15	30	19	1.93
30657935--30658709	50	15.7	50	72	7	388	34	15	30	19	1.93
30657929--30658561	246	2.6	245	79	4	589	34	16	30	18	1.93
30660785--30660976	30	6.4	30	78	3	172	36	20	2	40	1.66
30660824--30661019	30	6.6	29	72	13	123	35	25	3	36	1.71
30660824--30661020	89	2.2	89	81	5	211	35	24	3	37	1.71
30660882--30661041	30	5.4	30	71	8	112	33	28	2	35	1.71
30665363--30665523	35	4.6	34	83	6	160	29	21	13	36	1.91
30665363--30665522	71	2.3	70	83	3	187	29	21	13	35	1.91
30665556--30665598	19	2.3	19	95	0	77	18	25	20	34	1.96
30671560--30671677	42	2.8	42	78	3	132	26	18	14	40	1.89
30684586--30684615	7	4.1	7	91	8	51	26	0	0	73	0.84
30684585--30684615	15	2.1	15	100	0	62	25	0	0	74	0.82
30684588--30684621	15	2.3	15	89	0	50	32	0	0	67	0.91
30687587--30687721	30	4.5	30	79	9	123	38	4	20	36	1.73
30687609--30687722	60	1.9	60	85	3	158	38	2	20	38	1.66
30689387--30690562	208	5.7	207	85	4	1388	24	22	15	37	1.93
30689387--30690561	415	2.8	413	85	4	1474	24	22	15	37	1.93
30690216--30690384	85	2.0	85	84	4	225	26	23	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30690564--30690653	39	2.3	39	82	0	108	30	17	25	26	1.98
30690657--30691047	41	9.6	40	80	6	421	31	18	17	32	1.94
30690657--30691047	123	3.2	122	86	4	524	31	18	17	32	1.94
30691329--30691565	100	2.4	99	78	6	239	19	32	16	31	1.94
30691409--30691572	50	3.3	50	80	0	193	19	31	16	32	1.94
30692552--30692638	7	11.4	7	72	15	50	6	16	0	77	0.98
30692553--30692603	22	2.3	23	83	10	61	3	19	0	76	0.94
30697976--30698084	29	3.7	30	80	6	105	38	1	24	34	1.66
30697976--30698055	30	2.7	30	84	5	108	38	2	26	32	1.70
30697976--30698139	60	2.7	58	84	5	184	40	2	21	35	1.67
30697988--30698139	30	5.1	30	80	4	155	41	2	21	34	1.67
30706368--30706434	33	2.0	33	97	0	125	26	37	20	14	1.92
30715134--30715193	28	2.1	28	87	0	84	48	15	6	30	1.70
30716736--30716774	17	2.4	17	86	4	53	48	7	10	33	1.66
30720120--30720155	1	36.0	1	94	0	63	97	2	0	0	0.18
30720632--30720747	27	4.0	31	67	19	81	39	0	1	57	1.15
30721739--30721793	28	2.0	28	89	3	85	10	29	25	34	1.90
30724940--30724995	28	2.0	29	86	10	80	67	14	17	0	1.22
30724957--30724995	17	2.5	15	84	12	51	71	12	15	0	1.14
30726074--30726099	3	8.7	3	100	0	52	30	0	0	69	0.89
30726234--30726269	17	2.1	17	89	0	54	19	27	0	52	1.46
30732483--30732513	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30737656--30737682	3	9.0	3	100	0	54	33	0	0	66	0.92
30743326--30743376	13	3.8	13	86	2	66	43	27	15	13	1.85
30743340--30743377	7	5.6	7	87	6	60	44	28	13	13	1.81
30743366--30743409	18	2.4	18	80	0	52	34	27	20	18	1.96
30743411--30743449	11	3.5	11	92	0	51	30	25	23	20	1.98
30743370--30743461	22	4.4	21	68	10	55	31	26	21	20	1.98
30746610--30746657	2	24.5	2	95	4	89	50	0	0	50	1.00
30746800--30746843	15	2.9	15	83	10	54	77	2	15	4	1.04
30754045--30754088	15	2.9	15	83	10	54	77	2	15	4	1.04
30756929--30757028	24	4.1	24	82	1	110	23	18	24	35	1.96
30758306--30758395	40	2.2	40	73	11	94	41	12	10	36	1.76
30758495--30758548	25	2.2	24	83	3	63	50	25	3	20	1.65
30759262--30759309	10	4.7	10	74	5	51	56	2	2	39	1.23
30759276--30759320	19	2.3	19	88	7	63	57	0	2	40	1.11
30759793--30759829	18	2.1	18	89	0	56	16	5	8	70	1.30
30766918--30766961	15	2.6	17	75	17	56	65	0	0	34	0.93
30768728--30768772	22	2.0	23	87	12	67	60	0	0	40	0.97
30770240--30770279	3	13.3	3	100	0	80	35	0	0	65	0.93
30777597--30777629	5	6.6	5	100	0	66	18	0	21	60	1.36
30777733--30777806	22	3.4	22	85	7	105	16	22	22	37	1.93
30777716--30777816	44	2.3	44	85	0	148	19	22	18	38	1.93
30777733--30777839	22	4.9	22	82	6	101	17	24	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30777716--30777839	44	2.8	43	75	11	117	19	23	18	38	1.93
30779047--30779076	13	2.3	13	94	0	51	83	0	3	13	0.77
30787103--30787184	29	2.7	29	84	5	101	48	13	6	31	1.67
30787649--30787707	12	5.0	12	73	23	54	38	1	0	59	1.08
30787640--30787710	33	2.1	35	92	5	119	40	4	0	54	1.20
30800205--30800242	18	2.1	18	85	9	51	50	7	10	31	1.66
30800951--30801001	22	2.3	22	82	0	66	17	1	11	68	1.29
30800985--30801054	35	2.0	34	81	10	79	31	2	5	60	1.35
30808499--30808533	17	2.0	17	88	5	52	28	11	45	14	1.79
30811323--30811372	17	2.9	17	76	8	57	40	4	2	54	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143