genome.fa.s11.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  5  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1600543--1600573	7	4.4	7	91	0	53	29	25	3	41	1.71
1602175--1602244	31	2.3	29	80	9	77	38	1	5	54	1.33
1602366--1602400	15	2.2	16	90	5	54	62	0	2	34	1.10
1602602--1602629	3	9.3	3	100	0	56	67	0	32	0	0.91
1605115--1605139	13	1.9	13	100	0	50	24	0	0	76	0.80
1611429--1611459	2	15.5	2	100	0	62	51	0	0	48	1.00
1611564--1611596	3	11.3	3	93	6	59	0	30	33	36	1.58
1622573--1622651	39	2.0	39	95	0	140	45	11	18	24	1.82
1626630--1626666	18	2.0	19	89	5	58	59	10	2	27	1.44
1627053--1627113	30	2.0	31	87	3	88	52	13	6	27	1.64
1627895--1627923	2	14.5	2	100	0	58	48	0	0	51	1.00
1633751--1633777	3	9.0	3	100	0	54	33	0	0	66	0.92
1634113--1634149	14	2.4	16	86	8	51	43	0	0	56	0.99
1641100--1641141	23	2.0	20	86	13	57	57	4	0	38	1.20
1642698--1642759	29	2.1	30	82	11	74	50	11	6	32	1.64
1642909--1642949	16	2.6	16	84	0	55	43	12	4	39	1.63
1646348--1646399	26	2.1	24	82	7	59	57	9	1	30	1.42
1652131--1652178	23	2.0	24	88	4	71	27	18	6	47	1.72
1653529--1653572	19	2.4	19	84	3	63	43	0	4	52	1.22
1660108--1660132	3	8.3	3	100	0	50	68	0	0	32	0.90
1667704--1667734	3	10.3	3	100	0	62	32	0	0	67	0.91
1668219--1668283	16	3.9	16	76	10	60	33	1	1	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1670876--1670961	30	2.9	29	70	16	86	40	4	25	29	1.75
1670846--1670979	59	2.2	59	84	7	164	40	4	22	32	1.74
1670942--1671155	30	7.2	29	78	6	207	37	2	21	38	1.66
1670960--1671155	59	3.3	59	84	2	216	38	2	20	38	1.66
1670961--1671156	88	2.2	88	91	0	320	38	2	20	38	1.66
1672134--1672179	19	2.3	21	88	7	69	45	0	0	54	0.99
1672932--1673021	11	7.9	12	74	16	84	51	2	1	45	1.21
1672932--1673048	11	10.5	11	71	14	71	51	2	2	43	1.29
1672943--1673048	17	6.4	17	81	6	110	51	2	2	42	1.31
1672932--1673021	6	15.8	6	74	15	84	51	2	1	45	1.21
1674231--1674363	67	2.0	67	83	4	169	46	3	7	42	1.47
1676003--1676090	21	4.1	21	75	5	70	27	1	27	44	1.62
1680133--1680186	21	2.8	21	73	21	55	62	1	3	31	1.23
1680133--1680188	19	3.0	19	76	5	69	62	1	3	32	1.23
1681965--1682015	15	2.8	20	66	27	58	45	5	3	45	1.46
1682248--1682286	20	1.9	21	89	5	62	30	0	5	64	1.15
1685314--1685367	26	2.1	26	100	0	108	42	25	11	20	1.85
1686446--1686574	69	1.9	69	95	0	231	37	6	26	30	1.81
1689400--1689442	18	2.4	18	80	7	52	46	2	0	51	1.13
1689695--1689733	17	2.2	18	86	4	53	58	7	15	17	1.59
1690962--1691017	15	4.0	13	72	22	51	57	0	1	41	1.09
1691798--1691843	3	15.3	3	95	0	83	63	2	0	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1692895--1693004	29	3.8	29	78	17	129	31	31	3	32	1.75
1692892--1693100	59	3.4	59	83	12	267	33	32	2	31	1.73
1692922--1693015	29	3.2	29	77	19	122	34	31	3	30	1.74
1692948--1693090	68	2.1	68	89	3	216	36	31	2	29	1.72
1693017--1693100	29	2.8	30	75	20	86	32	33	2	32	1.71
1692895--1693135	127	1.9	128	85	4	335	31	31	4	31	1.79
1695076--1695135	20	3.1	19	73	19	61	31	0	1	66	1.01
1702293--1702415	21	5.9	21	91	0	192	39	29	23	8	1.83
1702293--1702414	63	1.9	63	94	0	217	38	29	23	8	1.84
1708965--1709005	20	2.0	20	100	0	82	41	34	0	24	1.55
1710913--1710996	31	2.8	29	77	10	80	55	11	5	26	1.58
1711310--1711347	15	2.5	15	87	8	51	39	0	2	57	1.12
1714086--1714120	2	17.5	2	100	0	70	48	0	51	0	1.00
1718548--1718597	15	3.2	16	71	21	52	36	6	6	52	1.51
1718717--1718795	31	2.6	30	79	13	81	40	3	3	51	1.38
1719058--1719097	17	2.4	17	82	0	53	70	5	0	25	1.08
1720207--1720259	23	2.3	21	82	17	70	37	24	22	15	1.92
1728831--1728862	7	4.6	7	100	0	64	31	12	0	56	1.37
1732199--1732244	18	2.6	18	77	16	51	67	2	0	30	1.03
1732199--1732247	19	2.7	17	78	12	53	67	2	0	30	1.02
1736378--1736420	13	3.3	13	78	12	52	48	0	0	51	1.00
1737139--1737181	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1750729--1750792	27	2.3	28	73	15	69	48	7	1	42	1.41
1754469--1754506	20	2.0	20	89	5	60	47	18	2	31	1.62
1756228--1756335	55	2.0	55	88	3	164	28	9	12	50	1.70
1758127--1758159	14	2.4	14	94	0	57	24	0	6	69	1.10
1758640--1758679	19	2.0	20	85	4	55	67	5	2	25	1.23
1763659--1763701	23	1.9	23	85	4	61	58	6	9	25	1.54
1767707--1767752	2	23.0	2	100	0	92	50	0	0	50	1.00
1770626--1770654	2	14.5	2	100	0	58	51	0	48	0	1.00
1772401--1772478	38	2.1	37	86	9	106	32	11	7	48	1.68
1772436--1772624	97	1.9	97	91	0	306	28	16	6	48	1.71
1774496--1774549	27	2.0	27	92	0	90	38	7	11	42	1.68
1774501--1774557	27	2.1	27	86	0	78	40	7	10	42	1.66
1790174--1790238	2	32.5	2	100	0	130	50	0	0	49	1.00
1803399--1803447	21	2.3	21	89	0	80	38	0	14	46	1.44
1817872--1817910	20	2.0	20	85	10	53	56	10	28	5	1.54
1820831--1820874	23	1.9	24	81	9	56	25	0	18	56	1.41
1821659--1821734	35	2.2	35	87	0	107	47	10	11	30	1.74
1821763--1821809	24	2.0	24	87	8	69	38	6	8	46	1.60
1829522--1829563	21	2.0	22	90	4	68	23	0	0	76	0.79
1847692--1847902	109	2.0	104	84	4	269	36	15	13	34	1.87
1850811--1850852	18	2.4	18	85	14	61	19	0	9	71	1.13
1853918--1853987	29	2.3	31	78	9	83	48	10	12	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855262--1855317	2	28.0	2	100	0	112	50	50	0	0	1.00
1855824--1855886	22	2.8	22	65	2	54	63	12	7	15	1.51
1858013--1858038	2	13.0	2	100	0	52	50	0	50	0	1.00
1859080--1859147	30	2.3	30	79	20	81	48	1	0	50	1.10
1860102--1860130	15	1.9	15	100	0	58	65	13	0	20	1.26
1861754--1861872	56	2.1	56	93	0	202	36	22	5	35	1.76
1862738--1862786	24	2.0	24	100	0	98	46	16	8	28	1.75
1866868--1866908	18	2.3	18	87	4	66	29	0	4	65	1.13
1866942--1866995	22	2.5	21	82	11	56	62	0	0	37	0.95
1874234--1874290	22	2.5	24	75	13	66	40	0	7	52	1.28
1874728--1874799	19	3.6	19	70	26	60	33	0	6	59	1.24
1874728--1874800	30	2.4	30	93	0	119	32	0	6	60	1.23
1884646--1884708	31	2.1	31	88	8	94	39	22	12	25	1.89
1884802--1884873	30	2.4	30	83	2	81	48	18	12	20	1.80
1891363--1891401	19	2.0	20	90	5	62	28	5	25	41	1.77
1898323--1898361	4	9.8	4	94	0	51	43	23	7	25	1.80
1898326--1898379	8	6.8	8	80	0	54	40	22	11	25	1.87
1902678--1902709	16	2.0	16	100	0	64	68	12	6	12	1.37
1904034--1904072	14	2.7	15	80	8	53	56	10	7	25	1.59
1905579--1905706	55	2.3	55	86	1	177	27	6	13	53	1.63
1905670--1905825	34	4.3	37	81	9	180	21	12	17	48	1.80
1905773--1905826	18	3.1	18	70	20	60	18	7	18	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905681--1905833	37	4.1	36	77	19	147	20	11	18	49	1.77
1906697--1906754	28	2.0	29	86	3	82	43	8	8	39	1.66
1914652--1914691	18	2.2	19	95	4	73	55	0	0	45	0.99
1916961--1916998	14	2.5	15	91	8	60	71	0	7	21	1.11
1921518--1921552	15	2.2	16	90	5	54	48	11	14	25	1.77
1925191--1925230	10	4.2	10	81	18	50	70	2	0	27	1.01
1925195--1925239	18	2.5	18	82	10	65	68	2	0	28	1.01
1925198--1925244	9	5.5	8	79	20	51	72	2	0	25	0.96
1932068--1932098	15	2.1	14	94	5	53	41	6	0	51	1.27
1932700--1932738	16	2.5	16	87	4	53	58	2	0	38	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143