genome.fa.s11.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  59  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18984766--18984795	11	2.6	11	94	5	51	13	10	0	76	1.01
18985357--18985401	17	2.6	17	89	3	63	46	15	20	17	1.84
18990393--18990439	21	2.2	21	88	0	67	2	29	10	57	1.44
19002189--19002229	21	2.0	21	85	0	55	19	9	26	43	1.82
19008071--19008111	18	2.5	17	84	11	50	60	9	12	17	1.57
19008068--19008106	18	2.2	18	90	4	62	58	12	12	15	1.62
19017985--19018169	89	2.1	89	97	0	352	30	16	22	30	1.96
19021344--19021426	43	1.9	43	87	0	121	28	28	24	18	1.98
19021344--19021447	43	2.4	42	80	6	120	30	30	24	14	1.94
19025135--19025408	37	7.4	37	87	2	189	33	23	15	27	1.95
19025162--19025408	74	3.3	74	88	1	352	33	23	14	28	1.94
19025158--19025415	111	2.3	110	86	3	376	32	24	14	28	1.94
19035546--19035650	30	3.6	29	85	3	138	39	23	17	20	1.92
19035545--19035657	59	1.9	60	88	1	174	39	24	15	19	1.91
19038037--19038228	28	6.9	28	79	2	199	19	16	23	41	1.90
19038049--19038258	28	7.5	29	75	9	179	20	14	23	41	1.89
19041392--19041428	11	3.5	11	89	10	51	0	16	0	83	0.64
19043282--19043724	195	2.3	195	80	5	468	26	19	27	26	1.99
19049678--19049716	12	3.0	13	92	7	62	74	0	0	25	0.82
19050984--19051046	31	2.0	32	90	3	101	36	19	7	36	1.81
19051086--19051132	12	4.2	11	78	13	51	17	0	6	76	0.98
19051160--19051224	25	2.7	23	75	11	67	10	3	10	75	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19055957--19056263	111	2.8	112	82	3	359	28	20	11	40	1.87
19056657--19056874	49	4.4	49	76	2	161	40	17	22	20	1.91
19056711--19056892	98	1.9	97	79	6	206	39	15	25	19	1.92
19056877--19056992	42	2.8	42	80	5	128	37	17	26	18	1.92
19057215--19057457	101	2.4	101	82	6	314	35	16	19	27	1.94
19057780--19057956	90	2.0	90	86	2	248	29	17	25	27	1.97
19058307--19058331	10	2.5	10	100	0	50	52	32	8	8	1.60
19059501--19059568	31	2.2	31	91	0	109	32	25	7	35	1.83
19062041--19062099	29	2.1	29	81	9	70	27	8	0	64	1.22
19062049--19062107	9	6.1	10	73	13	52	30	5	0	64	1.15
19063537--19063607	25	3.0	21	72	25	54	52	1	2	43	1.24
19065575--19065606	16	1.9	17	93	6	57	28	6	0	65	1.16
19069379--19070488	555	2.0	555	94	0	1925	32	14	22	31	1.93
19073503--19073748	43	5.7	43	90	1	377	21	31	21	25	1.98
19073503--19073748	87	2.9	87	93	1	406	21	31	21	25	1.98
19073503--19073744	130	1.9	129	89	4	380	20	31	22	25	1.98
19074047--19074098	21	2.5	21	90	0	77	1	44	21	32	1.63
19074084--19074240	66	2.4	65	89	1	242	14	25	17	42	1.88
19079662--19079728	33	2.1	33	97	2	127	41	8	5	43	1.60
19079748--19079884	22	6.3	21	70	17	93	51	0	1	45	1.15
19079748--19079829	4	20.0	4	73	14	69	52	0	1	46	1.08
19079787--19079829	18	2.4	18	84	7	61	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19079847--19079884	12	3.4	11	85	14	51	55	0	0	44	0.99
19079807--19081206	112	12.8	108	88	6	1795	48	4	1	45	1.33
19079954--19080095	22	6.4	22	63	19	62	52	2	0	45	1.18
19079847--19080920	58	19.5	56	66	21	485	48	4	1	45	1.32
19079847--19081206	216	6.2	216	90	5	2049	48	4	1	45	1.33
19080284--19080329	22	2.1	22	83	0	56	52	0	0	47	1.00
19080316--19080478	50	3.3	46	65	21	112	49	5	1	43	1.36
19081004--19081195	36	5.2	36	70	19	128	48	4	1	45	1.31
19085535--19085945	41	10.0	40	80	8	409	24	25	26	23	2.00
19085535--19085945	123	3.3	123	83	6	503	24	25	26	23	2.00
19093410--19093455	23	2.0	22	84	12	58	21	8	15	54	1.68
19099235--19099272	7	5.7	7	84	9	53	26	0	2	71	1.00
19103053--19103217	20	8.2	20	72	7	102	38	19	30	12	1.88
19103080--19103217	40	3.5	40	80	0	150	36	18	31	13	1.89
19103348--19103401	27	2.0	27	82	13	67	38	18	0	42	1.50
19104463--19104517	16	3.4	16	82	7	58	47	23	3	25	1.68
19104891--19104935	23	2.0	23	86	4	65	17	2	22	57	1.50
19105392--19105534	33	4.4	31	83	10	153	29	0	46	23	1.58
19105442--19105495	18	3.2	18	65	24	53	27	0	51	20	1.47
19105416--19105606	66	2.9	68	77	10	205	29	2	46	21	1.63
19105650--19105750	51	2.0	51	90	3	159	31	8	25	33	1.87
19118417--19118467	17	2.9	17	77	5	57	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19118416--19118474	30	2.0	28	90	6	91	44	0	1	54	1.10
19119067--19119138	25	3.2	24	67	23	66	45	1	1	51	1.18
19119048--19119145	43	2.2	44	89	1	144	43	4	2	50	1.32
19125352--19125392	18	2.2	19	86	4	57	43	12	0	43	1.41
19139119--19139162	22	2.0	22	100	0	88	31	0	9	59	1.29
19139127--19139177	22	2.3	22	83	6	59	31	5	7	54	1.53
19139199--19139235	20	1.9	20	94	5	67	10	13	0	75	1.04
19143634--19143693	16	3.8	16	88	0	93	43	0	26	30	1.55
19143632--19143703	32	2.3	31	80	7	90	41	2	25	30	1.69
19143875--19144025	58	2.6	59	85	4	207	54	1	0	43	1.13
19144005--19144053	24	2.0	25	84	11	66	63	0	4	32	1.13
19152206--19152306	51	2.1	47	89	9	150	15	20	15	47	1.82
19177468--19177581	60	1.9	61	87	1	167	33	28	7	30	1.86
19178635--19178668	3	11.3	3	100	0	68	0	32	0	67	0.91
19179381--19179539	41	3.9	41	83	4	205	38	11	23	26	1.89
19179379--19179539	82	2.0	82	88	4	245	38	11	23	26	1.88
19186216--19186403	41	4.6	41	84	6	238	40	11	24	23	1.87
19198988--19199281	52	5.7	52	92	0	444	28	12	23	36	1.91
19203996--19204052	23	2.5	23	78	13	64	49	0	1	49	1.11
19204004--19204065	23	2.7	22	80	11	63	50	1	0	48	1.10
19204246--19204275	13	2.3	13	94	0	51	36	20	6	36	1.79
19204451--19204499	24	2.0	24	88	7	73	8	42	2	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19204622--19204666	23	2.0	23	86	8	65	11	17	4	66	1.38
19214983--19215020	14	2.7	14	84	11	51	10	18	2	68	1.30
19223095--19223227	70	1.9	67	84	4	176	31	13	13	41	1.83
19224250--19224286	17	2.1	18	90	5	58	62	8	5	24	1.44
19224336--19224360	12	2.1	12	100	0	50	40	16	8	36	1.77
19228335--19228371	16	2.2	18	85	9	51	67	5	8	18	1.36
19235640--19236004	25	14.5	25	78	5	308	35	26	15	22	1.94
19235640--19236004	75	4.8	75	79	3	401	35	26	15	22	1.94
19235640--19235952	127	2.5	127	78	7	314	34	26	15	23	1.94
19247796--19247840	19	2.4	19	81	7	56	37	0	4	57	1.19
19248623--19248652	16	1.9	16	93	6	53	16	13	0	70	1.18
19248619--19248660	16	2.6	16	77	7	50	16	9	0	73	1.08
19250188--19250237	21	2.4	21	89	0	73	46	14	12	28	1.79
19250197--19250238	21	2.0	21	95	0	75	45	11	14	28	1.80
19251410--19251452	13	3.4	13	87	9	54	18	2	0	79	0.85
19251553--19251584	14	2.3	14	94	0	55	6	15	3	75	1.14
19254786--19254827	21	2.0	21	86	4	59	45	2	14	38	1.58
19267008--19267078	26	2.6	27	88	6	108	25	18	19	36	1.94
19267068--19267249	24	7.6	24	84	0	238	25	21	24	29	1.99
19270997--19271036	18	2.2	18	86	0	53	45	5	27	22	1.73
19270997--19271044	18	2.6	18	83	3	51	41	6	27	25	1.79
19283507--19283562	23	2.5	22	80	5	67	58	16	3	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19283614--19283664	3	16.7	3	91	4	84	66	0	1	31	1.03
19284736--19284846	7	16.4	7	72	7	68	35	21	23	19	1.96
19284732--19284842	34	3.3	33	81	10	127	37	21	21	18	1.94
19284732--19284846	20	5.7	20	79	7	99	36	21	22	19	1.95
19284838--19284900	11	5.7	11	79	7	74	28	26	26	17	1.98
19284838--19284899	22	2.8	22	87	0	88	29	27	27	16	1.97
19284922--19284956	15	2.4	15	90	4	54	14	5	31	48	1.67
19288502--19288864	123	3.0	122	87	5	486	37	11	7	43	1.69
19292315--19292404	27	3.3	27	90	0	144	23	11	25	40	1.87
19294483--19294507	11	2.3	11	100	0	50	16	24	28	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143