genome.fa.s11.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  121  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36121788--36122248	118	3.9	117	84	4	588	31	27	4	36	1.76
36121789--36122267	177	2.7	176	84	6	648	32	27	3	36	1.75
36122035--36122278	29	8.3	30	66	19	88	31	27	2	38	1.71
36125042--36125207	59	2.8	58	86	3	217	35	1	28	34	1.65
36125103--36125194	28	3.2	29	74	21	102	35	0	30	33	1.58
36125074--36125176	30	3.4	29	73	18	95	34	0	28	35	1.64
36125114--36125235	29	4.2	29	71	23	78	31	2	28	37	1.70
36125171--36125241	28	2.5	28	80	13	74	30	4	25	39	1.75
36125017--36125207	59	3.3	58	83	3	199	36	2	27	32	1.71
36125197--36125260	29	2.2	29	80	5	76	32	4	20	42	1.73
36126268--36126318	25	2.1	23	85	7	66	41	3	0	54	1.19
36126274--36126328	25	2.2	24	81	9	65	45	3	0	50	1.19
36127193--36127252	27	2.2	27	85	5	77	53	3	1	41	1.27
36127222--36127254	11	3.1	11	91	4	50	57	3	0	39	1.14
36127202--36127241	16	2.4	17	91	4	64	57	2	0	40	1.12
36127202--36127241	17	2.4	16	91	4	62	57	2	0	40	1.12
36132053--36132479	59	7.3	59	89	1	637	33	2	29	34	1.70
36132053--36132479	175	2.4	175	90	3	651	33	2	29	34	1.70
36132082--36132466	29	13.2	28	66	22	136	34	2	30	33	1.70
36133169--36133211	16	2.5	18	79	20	56	4	20	0	74	1.00
36133169--36133210	17	2.5	17	82	17	52	4	21	0	73	1.01
36134331--36134389	6	9.8	6	73	14	50	55	1	3	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36134346--36134373	14	2.0	14	100	0	56	57	0	7	35	1.26
36135855--36135894	21	1.9	21	85	10	55	27	2	12	57	1.48
36136077--36136206	68	1.9	68	87	3	190	29	17	6	46	1.74
36136465--36136520	21	2.8	20	84	13	62	67	7	1	23	1.24
36137692--36137752	12	5.3	11	80	5	50	40	1	1	55	1.19
36137699--36137819	6	21.0	6	72	17	96	44	2	0	52	1.14
36137705--36137819	17	6.6	17	85	11	119	44	2	0	53	1.14
36137705--36137819	37	3.3	35	86	10	148	44	2	0	53	1.14
36137722--36137822	16	5.9	16	82	13	121	45	2	0	51	1.16
36137723--36137835	17	6.6	16	82	11	100	46	3	0	48	1.25
36137871--36137938	26	2.6	27	79	9	77	45	26	14	13	1.82
36137889--36137929	13	3.1	14	75	10	50	48	24	14	12	1.78
36138634--36138670	15	2.7	13	84	15	56	59	0	0	40	0.97
36139698--36140202	30	17.4	29	72	17	301	35	28	2	33	1.70
36139695--36140152	59	7.9	59	87	6	582	35	28	1	33	1.69
36148691--36149340	200	3.2	200	88	2	894	38	20	22	19	1.94
36149676--36149725	17	2.9	17	90	3	73	40	2	0	58	1.10
36149670--36149733	29	2.2	29	88	0	92	43	1	0	54	1.09
36149673--36149741	12	5.8	12	79	3	50	44	1	1	52	1.19
36149670--36149749	29	2.8	29	82	3	81	45	2	1	51	1.22
36149670--36149733	23	2.8	23	78	4	67	43	1	0	54	1.09
36149670--36149733	6	11.0	6	77	12	71	43	1	0	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36149803--36149843	13	3.1	14	75	10	50	48	24	14	12	1.78
36149776--36149843	27	2.5	26	81	11	75	47	22	14	16	1.82
36150522--36150570	15	2.9	17	88	11	66	44	2	6	46	1.39
36151369--36151448	38	2.1	38	90	4	126	25	16	7	51	1.70
36151743--36152016	29	9.5	27	77	18	250	34	28	2	34	1.70
36151699--36152017	59	5.5	59	86	5	402	34	28	2	34	1.72
36154587--36154746	71	2.3	69	86	4	214	30	16	6	46	1.72
36154924--36154948	12	2.1	12	100	0	50	28	0	16	56	1.41
36156172--36156211	21	1.9	21	85	10	55	27	2	12	57	1.48
36156650--36156686	17	2.2	17	90	0	56	51	0	29	18	1.47
36170927--36172214	76	17.0	76	91	1	2014	33	16	18	32	1.93
36170927--36172378	152	9.5	152	91	2	2153	33	16	18	32	1.93
36170927--36172378	228	6.3	228	91	2	2234	33	16	18	32	1.93
36172244--36172371	38	3.4	38	74	14	138	35	12	19	32	1.89
36172060--36172378	167	1.9	165	92	1	530	33	16	18	31	1.93
36172227--36172378	76	2.0	76	94	2	270	34	15	17	32	1.91
36172601--36172692	6	15.2	6	72	18	75	47	4	1	46	1.29
36172609--36172659	11	4.8	11	76	9	52	41	5	0	52	1.25
36172596--36172665	17	4.4	17	84	12	94	42	4	0	52	1.20
36172607--36172666	31	1.9	31	96	0	111	43	5	0	51	1.23
36172593--36172669	37	2.1	38	85	7	104	41	3	0	54	1.19
36174523--36174777	59	4.4	59	85	2	318	32	29	3	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36174523--36174776	117	2.2	118	84	2	334	32	28	3	34	1.76
36182424--36182464	20	2.0	20	85	0	55	2	19	0	78	0.87
36182838--36182888	26	2.0	26	85	11	70	76	3	5	13	1.11
36186647--36186944	58	5.1	59	76	13	217	32	3	27	36	1.72
36186759--36186813	28	1.9	29	82	10	69	32	5	25	36	1.79
36186746--36186986	90	2.7	87	79	8	252	34	1	26	36	1.67
36186748--36186983	119	2.0	118	80	13	263	35	1	25	37	1.66
36186660--36186986	29	11.1	29	75	13	190	33	2	27	36	1.70
36188823--36188884	6	10.7	6	81	6	74	56	1	0	41	1.09
36188807--36188898	29	3.2	27	75	15	80	54	3	0	42	1.16
36188804--36188884	17	4.7	17	81	13	78	54	2	0	43	1.13
36188836--36188884	23	2.1	23	92	0	80	55	2	0	42	1.11
36189353--36189623	124	2.2	124	97	0	506	21	20	21	36	1.95
36189477--36190843	209	6.6	209	86	1	1717	22	22	18	36	1.95
36189468--36190828	627	2.2	622	86	1	1909	22	22	18	36	1.95
36202715--36202886	23	7.5	23	84	5	188	44	22	22	11	1.84
36202715--36202862	46	3.2	46	89	3	219	45	21	20	12	1.84
36206662--36206713	18	3.0	18	86	10	65	51	1	1	44	1.23
36207782--36207849	27	2.6	25	71	11	64	44	1	2	51	1.25
36208908--36209117	96	2.2	96	91	2	332	29	29	12	29	1.93
36211796--36211861	27	2.5	26	75	20	64	72	6	9	12	1.26
36213565--36213621	27	2.1	27	83	0	69	31	19	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36218659--36218730	31	2.3	31	85	4	92	43	9	6	40	1.65
36218674--36218738	31	2.1	31	88	8	96	43	12	10	33	1.77
36220149--36220198	7	7.0	7	89	10	75	14	12	0	74	1.09
36220182--36220239	5	10.4	5	84	15	62	17	1	3	77	0.99
36220189--36220239	5	9.4	5	91	6	66	17	0	3	78	0.90
36220175--36220256	21	3.6	22	80	11	78	18	3	3	74	1.12
36220160--36220236	6	12.7	6	94	4	79	15	5	2	76	1.07
36228822--36228998	84	2.1	84	87	2	257	38	21	24	15	1.92
36233140--36233193	27	2.0	27	100	0	108	37	25	7	29	1.83
36237646--36237791	58	2.5	58	81	11	174	46	2	1	49	1.24
36237875--36237979	46	2.5	44	82	13	114	37	25	5	31	1.80
36237886--36237979	44	2.1	44	86	7	127	37	26	5	30	1.79
36237961--36238032	16	4.5	16	89	0	117	26	29	5	38	1.79
36243599--36243740	75	1.9	75	92	0	239	47	14	15	22	1.81
36248177--36248515	183	1.9	183	85	2	475	31	26	20	21	1.98
36250079--36250131	18	2.9	18	77	5	52	33	0	1	64	1.05
36255929--36255990	31	2.0	31	96	0	115	51	8	14	25	1.69
36262165--36262278	48	2.5	44	78	16	122	14	27	19	39	1.90
36262186--36262278	48	2.0	46	87	8	134	13	25	20	39	1.90
36262165--36262265	23	4.3	23	81	9	116	12	28	18	39	1.88
36270605--36270638	16	2.1	16	88	0	50	50	2	0	47	1.16
36272293--36272324	15	2.1	15	100	0	64	37	12	6	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36280134--36280172	19	2.1	19	85	9	53	38	15	2	43	1.60
36281339--36281380	17	2.4	18	85	14	54	59	0	0	40	0.97
36281345--36281409	22	2.8	23	71	17	55	53	0	0	46	1.00
36290993--36291080	11	8.1	11	72	7	63	71	10	2	15	1.23
36290993--36291080	22	4.0	21	79	5	86	71	10	2	15	1.23
36293330--36293371	21	2.0	21	86	9	59	16	7	7	69	1.34
36301409--36301441	17	1.9	17	93	0	57	39	6	3	51	1.42
36303340--36303391	27	1.9	27	96	0	95	42	19	23	15	1.89
36303488--36303528	18	2.3	19	83	8	59	21	21	19	36	1.95
36305854--36306004	78	2.0	77	89	6	238	37	15	19	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143